View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18703_low_5 (Length: 288)
Name: NF18703_low_5
Description: NF18703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18703_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 11162964 - 11162703
Alignment:
| Q |
14 |
atatgcatcaaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatg |
113 |
Q |
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| T |
11162964 |
atatgcatcaaaaacgaagttgcagcggctgattcggctgtgactcaaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatg |
11162865 |
T |
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| Q |
114 |
attttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttgattcaagcaacaaagacgaagttgccgcaattgattcagttgtgac |
213 |
Q |
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| T |
11162864 |
attttgttgtgcttagttctgatgcatctgctacaaaagagccaaagctggttaattcaagcaacaaagacgaagtttccgcaattgattcagttgtgac |
11162765 |
T |
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| Q |
214 |
tccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattg |
275 |
Q |
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| T |
11162764 |
tccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattg |
11162703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 192 - 275
Target Start/End: Complemental strand, 11201561 - 11201478
Alignment:
| Q |
192 |
ccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattg |
275 |
Q |
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| T |
11201561 |
ccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattg |
11201478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 11162779 - 11162657
Alignment:
| Q |
43 |
tgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatct |
142 |
Q |
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| T |
11162779 |
tgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatct |
11162680 |
T |
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| Q |
143 |
gctacaaaagagccaaagctggt |
165 |
Q |
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| T |
11162679 |
gttacaaaagagcctaagctggt |
11162657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 11201554 - 11201432
Alignment:
| Q |
43 |
tgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgatagcgtggaatcacttgatgattttgttgtgcttagttctgatgcatct |
142 |
Q |
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| T |
11201554 |
tgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgatagcgtcgaatcactagatgatattgttttgattggtgaagatgcatct |
11201455 |
T |
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| Q |
143 |
gctacaaaagagccaaagctggt |
165 |
Q |
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| T |
11201454 |
gttacaaaagagcctaagctggt |
11201432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 162 - 239
Target Start/End: Complemental strand, 4802856 - 4802779
Alignment:
| Q |
162 |
tggttgattcaagcaacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagc |
239 |
Q |
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| T |
4802856 |
tggttgattcaagcaacaaagacgaagttgctgctactgattcaattgtgactccaactagtaaacctttgggaaagc |
4802779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 171 - 251
Target Start/End: Complemental strand, 4802779 - 4802699
Alignment:
| Q |
171 |
caagcaacaaagacgaagttgccgcaattgattcagttgtgactccaactatcaaatctttgggaaagcgatctgctgata |
251 |
Q |
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| T |
4802779 |
caagcaacaaagacgaagttgctgctactgattcaattgtgactccaactagcaaacctttgggaaagcggtctactgata |
4802699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 95
Target Start/End: Complemental strand, 4802772 - 4802699
Alignment:
| Q |
22 |
caaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaagtggtcttctgata |
95 |
Q |
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| T |
4802772 |
caaagacgaagttgctgctactgattcaattgtgactccaactagcaaacctttgggaaagcggtctactgata |
4802699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 82
Target Start/End: Complemental strand, 4802840 - 4802780
Alignment:
| Q |
22 |
caaaaacgaagttgctgctgctgattcggctgtgactccaactagcaaacctttgggaaag |
82 |
Q |
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| T |
4802840 |
caaagacgaagttgctgctactgattcaattgtgactccaactagtaaacctttgggaaag |
4802780 |
T |
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