View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18703_low_6 (Length: 241)
Name: NF18703_low_6
Description: NF18703
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18703_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 44682132 - 44682354
Alignment:
| Q |
1 |
tcaaattagagtcctctcatgaggaagatgatagctattatctcctttcatggaaatgcagatgtgggaataagttgtttcaaccatgattaatttctat |
100 |
Q |
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| T |
44682132 |
tcaaattagagtcctctca---ggaagatgatagctattatctcctttcatggaaatgcagatgtgggaataagttgtttcaaccatgattaatttctat |
44682228 |
T |
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| Q |
101 |
atataaataaatttttccatcaagagttgtaatttctatatcttggggatttgtactctttcatattgatctatgatctgatgtaggtatacatgttaat |
200 |
Q |
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| T |
44682229 |
atataaataaatttttccatcaagagttgtaatttctatatcttggggatttgtactctttcatattgatctatgatctgatgtaggtatacatgttaat |
44682328 |
T |
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| Q |
201 |
tagctaatatgttagccttattgtca |
226 |
Q |
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|||||||||||||||||||||||||| |
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| T |
44682329 |
tagctaatatgttagccttattgtca |
44682354 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 85
Target Start/End: Original strand, 2330979 - 2331015
Alignment:
| Q |
49 |
catggaaatgcagatgtgggaataagttgtttcaacc |
85 |
Q |
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|||||||||| ||||||||||||||| |||||||||| |
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| T |
2330979 |
catggaaatgtagatgtgggaataaggtgtttcaacc |
2331015 |
T |
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