View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_12 (Length: 504)
Name: NF18704_high_12
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 18 - 492
Target Start/End: Original strand, 7006775 - 7007249
Alignment:
| Q |
18 |
agtaaatacggcggtaaccagctttgggtgagtattggggaggccataatgccgagctcagtagtgaagttgtgggtgaggaagaaagagctttacattc |
117 |
Q |
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| T |
7006775 |
agtaaatacggcggtaaccagctttgggtgagtattggggaggccataatgccgagctcagtagtgaagttgtgggtgaggaagaaagagctttacattc |
7006874 |
T |
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| Q |
118 |
atgtgaatgatacttgtgtgaatcatgagttctgtcatgcttataggcaggttgtgtggaagaaatcagtacaacttgggtgttcacaggctacttgtac |
217 |
Q |
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| T |
7006875 |
atgtgaatgatacttgtgtgaatcatgagttctgtcatgcttataggcaggttgtgtggaagaaatcagtacaacttgggtgttcacaggctacttgtac |
7006974 |
T |
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| Q |
218 |
tgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagtcattggagagagtccattttgattggtgtttatgtatgat |
317 |
Q |
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| T |
7006975 |
tgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagtcattggagagagtccattttgattggtgtttatgtatgat |
7007074 |
T |
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| Q |
318 |
gatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaagtgtaatgtaaactatgctagagagatcaatat |
417 |
Q |
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| T |
7007075 |
gatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaagtgtaatgtaaactatgctagagagatcaatat |
7007174 |
T |
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| Q |
418 |
gtgcctatgtttggattctagtgtgaaatgtttgatgaatcttaaataaaattgctttggtctcaaatttatatt |
492 |
Q |
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| T |
7007175 |
gtgcctatgtttggattctagtgtgaaatgtttgatgaatcttaaataaaattgctttggtctcaaatttatatt |
7007249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 89 - 431
Target Start/End: Original strand, 7013230 - 7013558
Alignment:
| Q |
89 |
gtgggtgaggaagaaagagctttacattcatgtgaatgatacttgtgtg---aatcatgagttctgtcatgcttataggcaggttgtgtggaagaaatca |
185 |
Q |
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| T |
7013230 |
gtgggtgaaggagaaagagttttacattcatgtgaataatacttgtgtggtgaatcatgaat---gtggtgtttatacacaggttgtgtggaagaaatca |
7013326 |
T |
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| Q |
186 |
gtacaacttgggtgttcacaggctacttgtactgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagtcattggag |
285 |
Q |
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| T |
7013327 |
gcacaacttgggtgttcacaagctacttgtactggtaagaaggaagctagtttgactatttgtttctatgatccacctg------gtaatgttattggag |
7013420 |
T |
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| Q |
286 |
agagtccattttgattggtgtttatgtatgatgatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaag |
385 |
Q |
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| T |
7013421 |
agagtccattttgactgatgataatgtatgatgatatgaataacatgatgtatttcaagtaatgttacttt------tttcttcaattaaattatgtaag |
7013514 |
T |
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| Q |
386 |
tgtaatgtaaactatgctagagagatcaatatgtgcctatgtttgg |
431 |
Q |
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| T |
7013515 |
tttaatgtaacctgtgctacagagatcaata--tgcctatgtttgg |
7013558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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