View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_14 (Length: 494)
Name: NF18704_high_14
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_14 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 142 - 448
Target Start/End: Original strand, 40059631 - 40059944
Alignment:
| Q |
142 |
atatcaggaatacacatctattgttttattttcgcaattcatatatcaagaccacaaattgaagtgacctaacatgttgacaaaacatctagacaatatt |
241 |
Q |
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| T |
40059631 |
atatcaggaatacacatctattgttttattttcgcaattaatatatcaagaccacaaattgaagtgacctaacatgttgacaaaacatctagacaatatt |
40059730 |
T |
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| Q |
242 |
taggacaaacatcctttcttctgaattaaaggtcggaatgatgaacaa---taggggataaagtgattgccccattgaccagcgattcaatcaaaacaaa |
338 |
Q |
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| T |
40059731 |
taggacaaacatcctttcttctgaattaaaggtcggaatgatgaacaatattaggggataaagtgattgccccattgaccagcgattcaatcaaaacaaa |
40059830 |
T |
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| Q |
339 |
acaaccgaggtaacaaacaaaccataatc-----acagtacttagtggagctagcactacatgtaaatgttatctnnnnnnnngcactacatgtaaatgt |
433 |
Q |
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| T |
40059831 |
gcaaccgaggtaacaaacaaaccataatctaaaaacagtacttagtggagctagcactacatgt-aatgttatctaaaaaaaagcactacatgtaaatgt |
40059929 |
T |
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| Q |
434 |
agatgcgcatgcatg |
448 |
Q |
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| T |
40059930 |
agatgcgcatgcatg |
40059944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 40059507 - 40059417
Alignment:
| Q |
1 |
cccaaaagccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctctaggtttgtc--tttccacacttaaaactc |
89 |
Q |
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| T |
40059507 |
cccaaaagccatcaagctttagcatattgattccctaaaaggttccttcttttgaactctctaggtttgtctttttccacacttaaaactc |
40059417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 84 - 155
Target Start/End: Original strand, 40059537 - 40059608
Alignment:
| Q |
84 |
aaactcatttaacaaaagttacaataaaccactttatatttttattttcataattaacatatcaggaataca |
155 |
Q |
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| T |
40059537 |
aaactcatttaacaaaaggcacaataaaccacttaatatttttattttcataattaacatatcaggaataca |
40059608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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