View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_high_16 (Length: 464)
Name: NF18704_high_16
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_16 |
 | |
|
| [»] scaffold0007 (3 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 38 - 451
Target Start/End: Original strand, 26975513 - 26975926
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||| |||||| |
|
|
| T |
26975513 |
attggacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctttacatgttgctgattacctt |
26975612 |
T |
|
| Q |
138 |
gttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgg |
237 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| | ||| ||||||||||| | || ||||||||||| ||||||||||||||| |||||||| ||||||| |
|
|
| T |
26975613 |
gttggactcaaatctcgaatattaaaagtgaactcactactagacttggggtctactgatggagtcttcataataggaatccttggaactgggggaatgg |
26975712 |
T |
|
| Q |
238 |
gtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaagg |
337 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||| |||||| || |
|
|
| T |
26975713 |
gtaagacaacacttgctcaagcagtttataatttgattgctaatcaatttgaatgtaactgtttccttcacgatgtgagagaaaattcagttaaacatgg |
26975812 |
T |
|
| Q |
338 |
cctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggcta |
437 |
Q |
| |
|
| ||||||||||||||||||| |||||||| ||||||||||||| | ||| | ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26975813 |
cttagagtatctccaagagcaactcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggcta |
26975912 |
T |
|
| Q |
438 |
tgtcagaagaaagt |
451 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
26975913 |
tatcagaagaaagt |
26975926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 38 - 451
Target Start/End: Original strand, 26950305 - 26950718
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||| |||||| |
|
|
| T |
26950305 |
attggacagaaatgaatatgaacgcgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctt |
26950404 |
T |
|
| Q |
138 |
gttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||| ||||||| || |||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
26950405 |
gttggactcaaatctcgaatatcagaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactgggggaatgg |
26950504 |
T |
|
| Q |
238 |
gtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaagg |
337 |
Q |
| |
|
| |||||||||||||||||||| |||||||| | |||||||| ||||||||||| || ||||| ||||| ||||||||||||||||||| ||||| || |
|
|
| T |
26950505 |
gaaagacaacacttgctcaagcagtttataacttgattgctaatcaatttgaatgcaaatgttttcttcacaatgtgagagaaaattcagtaaaacatgg |
26950604 |
T |
|
| Q |
338 |
cctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggcta |
437 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||| | ||| | ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26950605 |
cttagagtatctccaagagcagctcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggcta |
26950704 |
T |
|
| Q |
438 |
tgtcagaagaaagt |
451 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
26950705 |
tatcagaagaaagt |
26950718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 38 - 450
Target Start/End: Original strand, 26636208 - 26636620
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||| |||||| |
|
|
| T |
26636208 |
attggacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctt |
26636307 |
T |
|
| Q |
138 |
gttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||| | || ||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
26636308 |
gttggactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgg |
26636407 |
T |
|
| Q |
238 |
gtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaagg |
337 |
Q |
| |
|
| ||||||| |||||||||||| ||||||||| ||| |||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
26636408 |
gcaagacaaaacttgctcaagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagttaaacatgg |
26636507 |
T |
|
| Q |
338 |
cctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggcta |
437 |
Q |
| |
|
| |||||||||||||||||||| ||||||| ||||||||||||| | ||| | ||||||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
26636508 |
cttagagtatctccaagagcagatcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccagtcataaaacgaaggcta |
26636607 |
T |
|
| Q |
438 |
tgtcagaagaaag |
450 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
26636608 |
tattagaagaaag |
26636620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 38 - 450
Target Start/End: Original strand, 26742174 - 26742586
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||| |||| |||||| |
|
|
| T |
26742174 |
attggacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacgtctcctacaagatcaaccacgttcctctacatgttgctgattacctt |
26742273 |
T |
|
| Q |
138 |
gttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgg |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||| | || ||||||||||||||||||||||||||| ||||| | ||||||| |
|
|
| T |
26742274 |
gttggactcaaatctcgaatatcagaagtgaactcacttctagacttggggtctactgatggagtctgcataataggaatccttggaaccgaaggaatgg |
26742373 |
T |
|
| Q |
238 |
gtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaagg |
337 |
Q |
| |
|
| ||||||| |||||||||||| ||||||||| ||| |||| |||||||||||| |||||||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
26742374 |
gcaagacaaaacttgctcaagcaatttataatttgatttctaatcaatttgaatgtttgtgtttccttcacaatgtgagagaaaattcagttaaacatgg |
26742473 |
T |
|
| Q |
338 |
cctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggcta |
437 |
Q |
| |
|
| |||||||||||||||||||| ||||||| ||||||||||||| | ||| | ||||||||||||| ||||||||||||| |||||| |||||||||| |
|
|
| T |
26742474 |
cttagagtatctccaagagcagatcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccagtcataaaacgaaggcta |
26742573 |
T |
|
| Q |
438 |
tgtcagaagaaag |
450 |
Q |
| |
|
| | ||||||||| |
|
|
| T |
26742574 |
tattagaagaaag |
26742586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 38 - 451
Target Start/End: Original strand, 26959688 - 26960099
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||||||| || |||||| | ||||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
26959688 |
attggacagaaatgagtatgaacgtgattttattgaaaaaatagttacagacgtctccaacaagattaaccatgttcctttacatgttgctgattacctt |
26959787 |
T |
|
| Q |
138 |
gttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgg |
237 |
Q |
| |
|
||||| |||||||||||||||||| ||||||||| |||| ||| ||||||| || |||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
26959788 |
gttggtctcaaatctcgaatatcaaaagtgaattcactttcagagttgggatcaaacgatggagtctgcatgataggaatccttggaactggaggaatgg |
26959887 |
T |
|
| Q |
238 |
gtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaagg |
337 |
Q |
| |
|
| |||||||||||| ||||||| ||||||||||| |||| | | |||||||||| ||||||||||||||| ||||||||||||||||||| |||||| || |
|
|
| T |
26959888 |
gaaagacaacactttctcaagcagtttataattcgattgttcatcaatttgaatttaagtgtttccttcacaatgtgagagaaaattcagttaaacatgg |
26959987 |
T |
|
| Q |
338 |
cctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggcta |
437 |
Q |
| |
|
| ||||||||||||||||| | ||||||| ||||||||||||| | ||| | ||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
26959988 |
cttagagtatctccaagag--gatcctctccaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaaacgaaggcta |
26960085 |
T |
|
| Q |
438 |
tgtcagaagaaagt |
451 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
26960086 |
tatcagaagaaagt |
26960099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 43 - 451
Target Start/End: Original strand, 26849279 - 26849687
Alignment:
| Q |
43 |
acagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtaccttgttgg |
142 |
Q |
| |
|
||||||| ||||||||| | ||||||||| |||||||||| || ||||| |||||||||||||||||||||| |||||| |||| ||||||||||| |
|
|
| T |
26849279 |
acagaaatgaatatgaacaccattttattgggaaaatagttaaggatgtctccaacaagatcaaccatgttcctttgcatgttgctgattaccttgttgg |
26849378 |
T |
|
| Q |
143 |
actcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgggtaag |
242 |
Q |
| |
|
||| ||||||||||||||||||||||||| ||||||||| |||| || ||||||||||||||| | |||||||||||| |||||||| |||||||| || |
|
|
| T |
26849379 |
acttaaatctcgaatatcagaagtgaattcacttctagaattggaatctaatgatggagtctggaaaataggaatccttggaactggaggaatgggaaaa |
26849478 |
T |
|
| Q |
243 |
acaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaaggcctag |
342 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||| | |||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||| |
|
|
| T |
26849479 |
acaacacttgctcaagcagtttataattcgattgctgatcaatttgaatgtaagtgtttccttcacgatgtgagagaaaattcacttaaacatggcttag |
26849578 |
T |
|
| Q |
343 |
agtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggctatgtca |
442 |
Q |
| |
|
||| ||||||||||||||||||||| ||||||||| ||| | ||| | ||||||||||||| ||||||||||||| |||||| ||||||||||| ||| |
|
|
| T |
26849579 |
agtttctccaagagcagctcctctccaaatcaatcagatttgaaactaagtttggacatgttaatgaaggaattccagtcataaaacgaaggctatctca |
26849678 |
T |
|
| Q |
443 |
gaagaaagt |
451 |
Q |
| |
|
||||||||| |
|
|
| T |
26849679 |
gaagaaagt |
26849687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 38 - 451
Target Start/End: Original strand, 25074432 - 25074842
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||||||| |||| ||||| ||||||| ||||| |||||||||||||| |||| |||||| |
|
|
| T |
25074432 |
attggacagaaatgaatatgaacgtgattttattgaaaaaatagttagagacgtctccaacaagattaaccaaattcctttacatgttactgattacctt |
25074531 |
T |
|
| Q |
138 |
gttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgg |
237 |
Q |
| |
|
||||| || ||||||||| ||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||||||| | |||||||||||||||| |
|
|
| T |
25074532 |
gttggtcttcgatctcgaatttcagaagtgaattcacttctagacttgggatataatg---gagtatgcataataggaatcgttggaactggtggaatgg |
25074628 |
T |
|
| Q |
238 |
gtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaagg |
337 |
Q |
| |
|
| |||||||| ||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||| || |
|
|
| T |
25074629 |
gcaagacaactcttgctcaagcaatttataatttgattgctaatcaatttgaatgtaagtgtttccttcacaatgtgagagaaaattcagttcaacatgg |
25074728 |
T |
|
| Q |
338 |
cctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggcta |
437 |
Q |
| |
|
| |||||||||| ||||||||||| |||| ||||||||||||| | ||| | ||||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
25074729 |
cttagagtatcttcaagagcagcttctctttaaatcaatcggatttgaaactaagtttggacatgttaatgaaggaattccaatcataaagcgaaggcta |
25074828 |
T |
|
| Q |
438 |
tgtcagaagaaagt |
451 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
25074829 |
tgtcaaaagaaagt |
25074842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 38 - 451
Target Start/End: Complemental strand, 27664825 - 27664412
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||||||| ||||||||| | | ||||||||| |||||||||||||| ||||| |||||||||||| | || |||||||||| ||||||||||| |
|
|
| T |
27664825 |
attggacagaaataaatatgaatacaaatttattgaagaaatagttacagacgtctccaacaagatcaaccgttgtcatttacatgttgctgagtacctt |
27664726 |
T |
|
| Q |
138 |
gttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgg |
237 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||| |||||||| || ||| |
|
|
| T |
27664725 |
gttggactcgaatctcgaatatcagaagtgaattcacttctagacttgggatgtaccgatggagtctacataataggaatccttggaactggaggtctgg |
27664626 |
T |
|
| Q |
238 |
gtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaagg |
337 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||||||| ||| ||||||||||||| |||||||||| | ||||| |||||||||||| |||||| | |
|
|
| T |
27664625 |
gtaagacaacacttgctgaagcagtttataattcaattgttaatcaatttgaatgtaggtgtttcctttacaatgttagagaaaattcatttaaacatag |
27664526 |
T |
|
| Q |
338 |
cctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggcta |
437 |
Q |
| |
|
| || ||||||||||||||||||||||||| ||||||||||||| | | | || | | ||||| || |||||||||| |||||||| || ||||||| |
|
|
| T |
27664525 |
cttaaagtatctccaagagcagctcctctccaaatcaatcggatatgacaccccgctagaacatgataatgaaggaattgaaatcataaaacaaaggcta |
27664426 |
T |
|
| Q |
438 |
tgtcagaagaaagt |
451 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
27664425 |
tgtcggaagaaagt |
27664412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 192 - 452
Target Start/End: Original strand, 31288984 - 31289245
Alignment:
| Q |
192 |
aatgatggagtctgcataataggaatcctcggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaat |
291 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| |||| |||||| ||||||||| ||||||| |||||||||| ||| | | |||||||||| |
|
|
| T |
31288984 |
aatgatggagtctgcataataggaatacttggaactggaggaaggggtaaaacaacactttctcaagcaatttataattcgattattgatcaatttgaat |
31289083 |
T |
|
| Q |
292 |
gtaagtgtttccttcataatgtgagagaaaattcagataaacaaggcctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaacca |
391 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| | | |||||| ||| |||||||||||||||||||||||||||| ||||||||||||| | ||| || |
|
|
| T |
31289084 |
gtaagtgtttccttcacattgtgagagaaaatgctgttaaacatggcttagagtatctccaagagcagctcctctccaaatcaatcggatttgaaagaca |
31289183 |
T |
|
| Q |
392 |
atttggacatgttagtgaaggaattccaatcataagacgaa-ggctatgtcagaagaaagtg |
452 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| | ||| |||||| ||||||||||||| |
|
|
| T |
31289184 |
gtttggacatgttaatgaaggaatttcaatcataaaatgaagggctatctcagaagaaagtg |
31289245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 38 - 157
Target Start/End: Original strand, 31288867 - 31288986
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||| ||| ||||||||| | |||||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||| |||| |||||| |
|
|
| T |
31288867 |
attggacataaatgaatatgaacgagattttattgaaaaaatagttacagatgtctccaacaagattaaccatgttcctttacatgttgctgattacctt |
31288966 |
T |
|
| Q |
138 |
gttggactcaaatctcgaat |
157 |
Q |
| |
|
||||| |||||||||||||| |
|
|
| T |
31288967 |
gttggtctcaaatctcgaat |
31288986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 222 - 452
Target Start/End: Original strand, 26724314 - 26724544
Alignment:
| Q |
222 |
ggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaa |
321 |
Q |
| |
|
|||| ||| ||| ||||||| || |||||| ||| ||| |||||| ||| |||||| | ||||||||| | |||||||||||| ||||||||||||| |
|
|
| T |
26724314 |
ggaagtggaggattgggtaaaacgacacttactcgagcagtttatgatttgattgctgatcaatttgaagggttgtgtttccttcacaatgtgagagaaa |
26724413 |
T |
|
| Q |
322 |
attcagataaacaaggcctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaat |
421 |
Q |
| |
|
||||| |||| | ||| |||| |||||||||||| |||||||||| |||| |||||||| || | || ||| ||||||||||||| ||| |||| |
|
|
| T |
26724414 |
attcaattaaatatggcttagaatatctccaagagaagctcctctccaaattaatcggattggaatttaagttcggagatgttagtgaagggatttcaat |
26724513 |
T |
|
| Q |
422 |
cataagacgaaggctatgtcagaagaaagtg |
452 |
Q |
| |
|
||||| || |||||| |||| ||||||||| |
|
|
| T |
26724514 |
cataaaacacaggctacgtcaaaagaaagtg |
26724544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 237 - 353
Target Start/End: Complemental strand, 28097864 - 28097748
Alignment:
| Q |
237 |
ggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaag |
336 |
Q |
| |
|
||||||||||||||||| |||| |||||||||| |||||| |||||||||||| ||||||||||| ||||||||||||||||||| ||||| | |
|
|
| T |
28097864 |
ggtaagacaacacttgcaaaagcggtttataatttcattgctggtcaatttgaatgtgtctgtttccttcacaatgtgagagaaaattcagcaaaacatg |
28097765 |
T |
|
| Q |
337 |
gcctagagtatctccaa |
353 |
Q |
| |
|
|| ||||| |||||||| |
|
|
| T |
28097764 |
gcttagagcatctccaa |
28097748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 236 - 355
Target Start/End: Original strand, 28140295 - 28140414
Alignment:
| Q |
236 |
gggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaa |
335 |
Q |
| |
|
|||||| ||||||||||| ||||| ||||||||| ||||| | |||||||||||| |||||| ||||||||||||||||||| ||||| |||||| |
|
|
| T |
28140295 |
gggtaaaacaacacttgcacaagcaatttataattttattgccgatcaatttgaatgtttgtgttttcttcataatgtgagagaaatttcagctaaacat |
28140394 |
T |
|
| Q |
336 |
ggcctagagtatctccaaga |
355 |
Q |
| |
|
||| |||| |||||||||| |
|
|
| T |
28140395 |
ggcttagaagatctccaaga |
28140414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 222 - 361
Target Start/End: Complemental strand, 29843423 - 29843284
Alignment:
| Q |
222 |
ggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaa |
321 |
Q |
| |
|
|||| ||||||| ||||||| ||||||||||||| ||| ||||||||| |||||| | ||||||||||| |||||| ||||| | | |||||||| |
|
|
| T |
29843423 |
ggaattggtggattgggtaaaacaacacttgctcgagcaatttataatttgattgctgataaatttgaatgtttgtgttttcttcacgacgggagagaaa |
29843324 |
T |
|
| Q |
322 |
attcagataaacaaggcctagagtatctccaagagcagct |
361 |
Q |
| |
|
||||| |||||| ||| ||||| ||||||||||| |||| |
|
|
| T |
29843323 |
gttcagctaaacatggcttagagcatctccaagagaagct |
29843284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 393 - 426
Target Start/End: Original strand, 26812445 - 26812478
Alignment:
| Q |
393 |
tttggacatgttagtgaaggaattccaatcataa |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
26812445 |
tttggacatgttagtgaaggaattccaatcataa |
26812478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 84
Target Start/End: Original strand, 24716147 - 24716193
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagtta |
84 |
Q |
| |
|
|||||||||||| ||| ||||| ||||| |||||||||||||||||| |
|
|
| T |
24716147 |
attggacagaaatgaacatgaaggcgatgttattgaaaaaatagtta |
24716193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 26623848 - 26623938
Alignment:
| Q |
53 |
atatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtaccttgttgga |
143 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | | |||||||| |||||||||| | ||| || ||||||||| || | |||| ||||||| |
|
|
| T |
26623848 |
atatgaatatgattttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgga |
26623938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 26729825 - 26729915
Alignment:
| Q |
53 |
atatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtaccttgttgga |
143 |
Q |
| |
|
|||||||| |||||||||||||| ||||| | | |||||||| |||||||||| | ||| || ||||||||| || | |||| ||||||| |
|
|
| T |
26729825 |
atatgaatatgattttattgaaaagatagtcaaatacatctccaacaagatcaatcgtgtgcccttacatgttgctaaataccctgttgga |
26729915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 28243544 - 28243645
Alignment:
| Q |
225 |
actggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaatt |
324 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||||||||||| || ||| | |||||||| ||| ||||| ||||| |||| || ||||||| |
|
|
| T |
28243544 |
actggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaatt |
28243643 |
T |
|
| Q |
325 |
ca |
326 |
Q |
| |
|
|| |
|
|
| T |
28243644 |
ca |
28243645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 25511650 - 25511742
Alignment:
| Q |
234 |
atgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca |
326 |
Q |
| |
|
|||||||| |||||||||| |||| |||| |||||| |||||| | ||||||||| || ||||| ||||||||||| ||||| |||||| |
|
|
| T |
25511650 |
atgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaagtgtatgttttcttcataatgtcagagagaattca |
25511742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 26056680 - 26056772
Alignment:
| Q |
234 |
atgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca |
326 |
Q |
| |
|
|||||||| |||||||||| |||| |||| |||||| |||||| | ||||||||| || ||||| ||||||||||| ||||| |||||| |
|
|
| T |
26056680 |
atgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca |
26056772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 326
Target Start/End: Original strand, 26076650 - 26076742
Alignment:
| Q |
234 |
atgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattca |
326 |
Q |
| |
|
|||||||| |||||||||| |||| |||| |||||| |||||| | ||||||||| || ||||| ||||||||||| ||||| |||||| |
|
|
| T |
26076650 |
atgggtaaatcaacacttgcaaaagcagtttttaattctattgctgatcaatttgaaggtgtatgttttcttcataatgtcagagagaattca |
26076742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 38 - 451
Target Start/End: Complemental strand, 17992835 - 17992422
Alignment:
| Q |
38 |
attggacagaaaggaatatgaatgcgattttattgaaaaaatagttacagacatctcctacaagatcaaccatgttcctttacatgttcctgagtacctt |
137 |
Q |
| |
|
|||||||||||| ||||||||| | |||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||||||| | || |||||| |
|
|
| T |
17992835 |
attggacagaaatgaatatgaacgtgattttattgaaaaaatagttacagacacttccaacaagattaaccacgttccattacatgttgccgattacctt |
17992736 |
T |
|
| Q |
138 |
gttggactcaaatctcgaatatcagaagtgaatttacttctagacttgggatgtaatgatggagtctgcataataggaatcctcggaactggtggaatgg |
237 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||||||||| || ||||||||| |||||||||||||||||||| || ||||||||||||| |
|
|
| T |
17992735 |
attggtctcaaatctcgaatatcagaagtgaattcacttctagacttggaatataatgatggtgtctgcataataggaatccttggtactggtggaatgg |
17992636 |
T |
|
| Q |
238 |
gtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaagg |
337 |
Q |
| |
|
| |||||||| ||||||||||| |||||||||| ||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| ||||| || |
|
|
| T |
17992635 |
gcaagacaactcttgctcaagcagtttataatttggttgctaatcaatttcaatgtaagtgtttccttcacaatgtgagagaaaattcagtcaaacatgg |
17992536 |
T |
|
| Q |
338 |
cctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataagacgaaggcta |
437 |
Q |
| |
|
| |||||||||| ||||||||||| ||||| ||||||||||||| | || ||||||||||||||| |||||| ||||||||||||| | ||||||| |
|
|
| T |
17992535 |
cttagagtatcttcaagagcagcttctctccaaatcaatcggatttgtaactaaatttggacatgttaatgaaggtattccaatcataaagcaaaggcta |
17992436 |
T |
|
| Q |
438 |
tgtcagaagaaagt |
451 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
17992435 |
tgtcaaaagaaagt |
17992422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 231 - 353
Target Start/End: Original strand, 3280414 - 3280536
Alignment:
| Q |
231 |
ggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagata |
330 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||| |||||||| |||||||||||| ||||| ||||| ||||||||||||||||||| | |
|
|
| T |
3280414 |
ggaatgggtaagacaactcttgcaagagcagtttataatttcattgctaatcaatttgaatgtgtatgttttcttcacaatgtgagagaaaattcagcaa |
3280513 |
T |
|
| Q |
331 |
aacaaggcctagagtatctccaa |
353 |
Q |
| |
|
|||| || |||||| |||||||| |
|
|
| T |
3280514 |
aacatggtctagagcatctccaa |
3280536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 237 - 426
Target Start/End: Original strand, 26136649 - 26136838
Alignment:
| Q |
237 |
ggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaattcagataaacaag |
336 |
Q |
| |
|
||||| ||||||||| ||| ||| |||||||||| ||||| | ||||||||| | ||| |||||||| |||||| |||||||||||| |||| | | |
|
|
| T |
26136649 |
ggtaaaacaacacttactcgagcagtttataatttgattgcggatcaatttgaaggattgtgcttccttcacaatgtgcgagaaaattcagttaaatatg |
26136748 |
T |
|
| Q |
337 |
gcctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaatttggacatgttagtgaaggaattccaatcataa |
426 |
Q |
| |
|
|| |||| ||||||||||||||||||||||| ||||||||||||| | | | || |||||||||||| |||||||||||||||||| |
|
|
| T |
26136749 |
gcttagaatatctccaagagcagctcctctccaaatcaatcggattggagattaagttaggacatgttagtaaaggaattccaatcataa |
26136838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 222 - 437
Target Start/End: Original strand, 16691613 - 16691828
Alignment:
| Q |
222 |
ggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaa |
321 |
Q |
| |
|
|||| ||| ||||| ||||| ||||||||||||| ||| ||||||||| |||||| | |||||||||||| |||||| |||||| | |||||||||| |
|
|
| T |
16691613 |
ggaattggaggaatcggtaaaacaacacttgctcgagcaatttataatttgattgctgatcaatttgaatgtttgtgttttcttcatgacgtgagagaaa |
16691712 |
T |
|
| Q |
322 |
attcagataaacaaggcctagagtatctccaagagcagctcctctcaaaatcaatcggatctaaaaaccaa-tttggacatgttagtgaaggaattccaa |
420 |
Q |
| |
|
||||| |||||| ||| |||| |||| ||||| |||||| || ||| | || |||| || | | || || ||||||||||||||||||||||||| |
|
|
| T |
16691713 |
attcatctaaacatggcttagaacatcttcaagaaaggctcctttccaaaaccattggat-tagacattaagttaggacatgttagtgaaggaattccaa |
16691811 |
T |
|
| Q |
421 |
tcataagacgaaggcta |
437 |
Q |
| |
|
| |||| || ||||||| |
|
|
| T |
16691812 |
taataaaacaaaggcta |
16691828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 31697 - 31760
Alignment:
| Q |
213 |
ggaatcctcggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattg |
276 |
Q |
| |
|
||||||| |||||| |||||||| || || ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
31697 |
ggaatccacggaaccggtggaatagggaaaacaactcttgctcaagcggtttataattcaattg |
31760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 276
Target Start/End: Original strand, 36446 - 36509
Alignment:
| Q |
213 |
ggaatcctcggaactggtggaatgggtaagacaacacttgctcaagccgtttataattcaattg |
276 |
Q |
| |
|
||||||| |||||| |||||||| || || ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
36446 |
ggaatccacggaaccggtggaatagggaaaacaactcttgctcaagcggtttataattcaattg |
36509 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 276
Target Start/End: Original strand, 67059 - 67107
Alignment:
| Q |
228 |
ggtggaatgggtaagacaacacttgctcaagccgtttataattcaattg |
276 |
Q |
| |
|
|||||||| || || ||||| ||||||||||| |||||||||||||||| |
|
|
| T |
67059 |
ggtggaatagggaaaacaactcttgctcaagcggtttataattcaattg |
67107 |
T |
|
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Target: scaffold0038 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 225 - 326
Target Start/End: Original strand, 43706 - 43807
Alignment:
| Q |
225 |
actggtggaatgggtaagacaacacttgctcaagccgtttataattcaattgctaaacaatttgaatgtaagtgtttccttcataatgtgagagaaaatt |
324 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||| ||||||||||| || ||| | |||||||| ||| ||||| ||||| |||| || ||||||| |
|
|
| T |
43706 |
actggtggaatgggaaagacaacacttgcaagagcagtttataattccatagctgatcaatttgattgtttatgttttcttcacgatgtaagggaaaatt |
43805 |
T |
|
| Q |
325 |
ca |
326 |
Q |
| |
|
|| |
|
|
| T |
43806 |
ca |
43807 |
T |
|
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