View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_high_17 (Length: 452)
Name: NF18704_high_17
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 403; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Original strand, 47076759 - 47077181
Alignment:
| Q |
17 |
agtggtaatacggatagaatcactgctgtcattccagatctgcagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatca |
116 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47076759 |
agtggtaatacggctagaatcactgctgtcattccagatctgcagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatca |
47076858 |
T |
|
| Q |
117 |
gaggcccaataagaatcccaacctgtttttgttgtgtgtgctgggtacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagt |
216 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47076859 |
gaggtccaataagaatcccaacctgtttttgttgtgtatgctgggtacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagt |
47076958 |
T |
|
| Q |
217 |
gattggtctctgataaactagaggacagttggcctccacaaggcagagattgactctccaataaagtatcagtcgggtgatcgaaactctgccatatgat |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47076959 |
gattggtctctgataaactagaggacagttggcctccacaaggcagagattgactctccaataaagtatcagtcgggtgatcgaaactctgccatatgat |
47077058 |
T |
|
| Q |
317 |
gctggaaatattattgttgtcatatagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgtattagcattaacaataagcttctgttgt |
416 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47077059 |
gctggaaatattatggttgtcatatagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgtattagcattaacaataagcttctgttgt |
47077158 |
T |
|
| Q |
417 |
ccctgttgatctgttagtattat |
439 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
47077159 |
ccctgttgatctgttagtattat |
47077181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 22 - 439
Target Start/End: Complemental strand, 47067560 - 47067143
Alignment:
| Q |
22 |
taatacggatagaatcactgctgtcattccagatctgcagtaaacctgtactgttaaggtaaagatgatgtttgacattggcactaacagtatcagaggc |
121 |
Q |
| |
|
||||| || |||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47067560 |
taataaggctagaatcactgctgtcatccaagatctgaagtaaacctgtacttttaaggtaaagatgatgtttgacattggcactaacagtatcagaggc |
47067461 |
T |
|
| Q |
122 |
ccaataagaatcccaacctgtttttgttgtgtgtgctgggtacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattg |
221 |
Q |
| |
|
|||||||| |||||||| ||||| | | ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47067460 |
ccaataagcatcccaacttgtttcagctatgtatgctggatacagaacaagatttccatcaacctgcatgttgagttgaaaccttccggttgagtgattg |
47067361 |
T |
|
| Q |
222 |
gtctctgataaactagaggacagttggcctccacaaggcagagattgactctccaataaagtatcagtcgggtgatcgaaactctgccatatgatgctgg |
321 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
47067360 |
gtctctgataaactagaggacagtttgcctccacaaggtagagattgactctccaatagagtatcagttgggtgatcgaaactctgccatatgatgctgg |
47067261 |
T |
|
| Q |
322 |
aaatattattgttgtcatatagtacaaagttcccagaatcaagcatggaggcagaggaagctcttgtattagcattaacaataagcttctgttgtccctg |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47067260 |
aaatattattgttgtcatatagtacaaagttcccagaatcaagcatggaggccgaggaagctcttgtattagcattaacaataagcttctgttgtccctg |
47067161 |
T |
|
| Q |
422 |
ttgatctgttagtattat |
439 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
47067160 |
ttgatctgttagtattat |
47067143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University