View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_high_18 (Length: 427)

Name: NF18704_high_18
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_high_18
NF18704_high_18
[»] chr8 (2 HSPs)
chr8 (17-363)||(7624945-7625300)
chr8 (261-344)||(10101415-10101498)
[»] chr7 (2 HSPs)
chr7 (260-349)||(23794088-23794177)
chr7 (305-349)||(24381302-24381346)
[»] chr6 (2 HSPs)
chr6 (118-188)||(186695-186768)
chr6 (285-349)||(11660424-11660488)
[»] chr4 (1 HSPs)
chr4 (118-157)||(34788889-34788928)
[»] chr1 (2 HSPs)
chr1 (130-169)||(49893720-49893759)
chr1 (129-184)||(33775895-33775952)
[»] chr5 (1 HSPs)
chr5 (123-169)||(8038199-8038245)
[»] chr3 (1 HSPs)
chr3 (272-324)||(50432849-50432901)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 17 - 363
Target Start/End: Original strand, 7624945 - 7625300
Alignment:
Q  17 aatttttcacccaacaatgacctatatctagaggaaagagatctctcgacttcattcccaatgagttatttacaaagagatataaatagttacaaaaa-- 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  7624945 aatttttcacccaacaatgacctatatctagaggaaagagatctctcgacttcattcccaatgagttatttacaaagagatataaatagttacaaaaatt 7625044  T
Q  115 --ttccaacgagctcaccaagagcaatcctaatttctaccatttttccgaatc---tcttgtgacgaagagactcgatgcttttgttacttaaagtgttt 209  Q
      ||||||| | |||||||||||||||||||||||||||||||||| ||||||   |||||||| ||||||||| |||||||||||||||||||||||||    
T  7625045 ggttccaacaaactcaccaagagcaatcctaatttctaccattttttcgaatctcttcttgtgatgaagagacttgatgcttttgttacttaaagtgttt 7625144  T
Q  210 cccaactctataatctaaccca--cccccnnnnnnnnggaaccaacctgcaacctttgattttataaggatatcattttttggactcccaagattccccc 307  Q
    ||||||||| ||||||||||||  |||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  7625145 cccaactctgtaatctaacccacccccccaaaaaaaaggaaccaacctgcaacctttgattttataaggatatcattttttggactcccaagattcacct 7625244  T
Q  308 aagttgctcacaaagactcaacctctcatgtatttcccaactcatgaatctcttcc 363  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7625245 aagttgctcacaaagactcaacctctcatgtatttcccaactcatgaatctcttcc 7625300  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 344
Target Start/End: Original strand, 10101415 - 10101498
Alignment:
Q  261 ctttgattttataaggatatcattttttggactcccaagattcccccaagttgctcacaaagactcaacctctcatgtatttcc 344  Q
    ||||||||| |||||||| || | |||||  |||| |||||||  |||||||||||||||||||||| | |||||||| |||||    
T  10101415 ctttgatttaataaggatctcctcttttgatctcctaagattcatccaagttgctcacaaagactcatcttctcatgtgtttcc 10101498  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 260 - 349
Target Start/End: Original strand, 23794088 - 23794177
Alignment:
Q  260 cctttgattttataaggatatcattttttggactcccaagattcccccaagttgctcacaaagactcaacctctcatgtatttcccaact 349  Q
    ||||||||||| ||||||| || | |||||| |||  | ||||| ||||| ||||||||||||||||| || ||||||| |||| |||||    
T  23794088 cctttgattttctaaggatctcctcttttggtctcttacgattcacccaaattgctcacaaagactcatccgctcatgtgtttctcaact 23794177  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 305 - 349
Target Start/End: Original strand, 24381302 - 24381346
Alignment:
Q  305 cccaagttgctcacaaagactcaacctctcatgtatttcccaact 349  Q
    |||||||||| ||| ||||||||||||||||||| ||| ||||||    
T  24381302 cccaagttgcccacgaagactcaacctctcatgtgttttccaact 24381346  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 188
Target Start/End: Complemental strand, 186768 - 186695
Alignment:
Q  118 caacgagctcaccaagagcaatcctaatttctaccatttttccgaatctctt---gtgacgaagagactcgatg 188  Q
    |||| ||||| |||||| ||| ||| ||||||||||||||||||| ||||||   ||||| |||||||||||||    
T  186768 caacaagctctccaagaacaaaccttatttctaccatttttccgattctctttccgtgaccaagagactcgatg 186695  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 285 - 349
Target Start/End: Complemental strand, 11660488 - 11660424
Alignment:
Q  285 ttttggactcccaagattcccccaagttgctcacaaagactcaacctctcatgtatttcccaact 349  Q
    |||||| ||||||||||||  |||| ||||||||||||| ||||||| | |||| || |||||||    
T  11660488 ttttggtctcccaagattcatccaaattgctcacaaagattcaacctattatgtgttccccaact 11660424  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 157
Target Start/End: Original strand, 34788889 - 34788928
Alignment:
Q  118 caacgagctcaccaagagcaatcctaatttctaccatttt 157  Q
    |||| ||||| |||||||||||||||||||||||||||||    
T  34788889 caacaagctctccaagagcaatcctaatttctaccatttt 34788928  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 169
Target Start/End: Original strand, 49893720 - 49893759
Alignment:
Q  130 caagagcaatcctaatttctaccatttttccgaatctctt 169  Q
    ||||||||||  ||||||||||||||||||||||||||||    
T  49893720 caagagcaattataatttctaccatttttccgaatctctt 49893759  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 129 - 184
Target Start/End: Complemental strand, 33775952 - 33775895
Alignment:
Q  129 ccaagagcaatcctaatttctaccatttttccgaatctctt--gtgacgaagagactc 184  Q
    |||||||||||||||||||||| |||||||| |||| ||||  ||||| |||||||||    
T  33775952 ccaagagcaatcctaatttctatcatttttctgaatatcttccgtgaccaagagactc 33775895  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 8038245 - 8038199
Alignment:
Q  123 agctcaccaagagcaatcctaatttctaccatttttccgaatctctt 169  Q
    ||||| ||||| ||||||||||||||||||||||||  |||||||||    
T  8038245 agctctccaagggcaatcctaatttctaccatttttttgaatctctt 8038199  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 324
Target Start/End: Original strand, 50432849 - 50432901
Alignment:
Q  272 taaggatatcattttttggactcccaagattcccccaagttgctcacaaagac 324  Q
    ||||||| || |||||||| ||| ||||||||  |||||||||||||||||||    
T  50432849 taaggatctccttttttggtctctcaagattcaaccaagttgctcacaaagac 50432901  T

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