View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_22 (Length: 422)
Name: NF18704_high_22
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_22 |
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| [»] scaffold0493 (1 HSPs) |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 121 - 400
Target Start/End: Original strand, 41759803 - 41760082
Alignment:
| Q |
121 |
ggagtgctagcaacagtttagtgaaattggtgtaagacaaactcaattcgccgcaacacgaagggtttt-agcttgcaattgaaaaatcttacaaatttg |
219 |
Q |
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| T |
41759803 |
ggagtgctagcaacagtttagtgaaattggtgtaagacaaactcaattcgccgcaacacgaagggtttttagcttgtaattgaaaaatctt-caaatttg |
41759901 |
T |
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| Q |
220 |
actcaaaaaccctaaaaattgagaatggacgaaggtggtgcgaaaccagtgtgcggccaagaagctctcgatctgctgaattgcgttacagattatccgt |
319 |
Q |
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| T |
41759902 |
actcaaaaaccctaaaaattgagaatggacgaaggtggtgcgaaaccagtgtgcggccaagaagctctcgatctgctgaattgcgttacagattctccgt |
41760001 |
T |
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| Q |
320 |
cgtacgataaagataaatgcctcgctcttttgaattcattgcgcgagtgtgtactctccaaggtactccttttcctctctg |
400 |
Q |
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| T |
41760002 |
cgtacgataaagataaatgcctcgctcttttgaattcattgcgcgagtgtgtactctccaaggtactccttttcctctctg |
41760082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0493 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 53
Target Start/End: Original strand, 7466 - 7496
Alignment:
| Q |
23 |
taaaaacaaaactgcagatatttacggggat |
53 |
Q |
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| T |
7466 |
taaaaacaaaactgcagatatttacggggat |
7496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 73
Target Start/End: Original strand, 352835 - 352888
Alignment:
| Q |
20 |
gattaaaaacaaaactgcagatatttacggggataagaaacgtaactaacccta |
73 |
Q |
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| T |
352835 |
gattaaaaacaaaactgctgatatttacagggaccagaaacttaattaacccta |
352888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 72
Target Start/End: Complemental strand, 8372483 - 8372434
Alignment:
| Q |
23 |
taaaaacaaaactgcagatatttacggggataagaaacgtaactaaccct |
72 |
Q |
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| T |
8372483 |
taaaaacaaaactgcagatatttatagggataaaaaaattaactaaccct |
8372434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 6801091 - 6801043
Alignment:
| Q |
23 |
taaaaacaaaactgcagatatttacggggataagaaacgtaactaaccc |
71 |
Q |
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|||||||||||||||| |||||||||||||| | |||| ||| |||||| |
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| T |
6801091 |
taaaaacaaaactgcaaatatttacggggatcaaaaacttaattaaccc |
6801043 |
T |
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