View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_high_23 (Length: 394)
Name: NF18704_high_23
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_23 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 161 - 379
Target Start/End: Original strand, 27693449 - 27693672
Alignment:
| Q |
161 |
ccaatgcatatgatagaag-----tgtcttttaactaaatgtgtatctagtgcgnnnnnnnnnnnacttacgcaagagaatgaagagaaatagagcgcgc |
255 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| | |
|
|
| T |
27693449 |
ccaatgcatatgatagaagctaagtgtcttttaactaaatgtgtatctagtgcgtttttttttttacttacgcaagagaatgaagaaaaatagagcgccc |
27693548 |
T |
|
| Q |
256 |
actgctgtatcgtatatcatgctgcggtatgacaattgttcctcttcccggtcacggtctctgtcttgctgatgctgttcacagcgttttggtcgccaac |
355 |
Q |
| |
|
| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27693549 |
attgctgtatcgtatatcatgctggggtatgacaattgttcctcttcccggtcacggtctctgtcttgctgatgctgttcacagcgttttggtcgccaac |
27693648 |
T |
|
| Q |
356 |
gaagctcaattccgttgacatact |
379 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
27693649 |
gaagctcaattccgttgacatact |
27693672 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 27693299 - 27693383
Alignment:
| Q |
11 |
cagagaatgttgaatatcctaatgaatttcttgtaagttgtaattcaatggtgtttcaggagacagagtaatgcatatatatttc |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
27693299 |
cagagaatgttgaatatcctaatgaatttcttgtaagttgtaattcaatggtgtttcaggagacaaagtaatgcatgtatatttc |
27693383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University