View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_high_26 (Length: 392)

Name: NF18704_high_26
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_high_26
NF18704_high_26
[»] chr3 (9 HSPs)
chr3 (4-376)||(39972867-39973261)
chr3 (113-222)||(4037125-4037234)
chr3 (113-217)||(49279473-49279577)
chr3 (96-217)||(11233473-11233594)
chr3 (99-222)||(39994161-39994284)
chr3 (111-192)||(10688590-10688671)
chr3 (184-222)||(39350780-39350818)
chr3 (115-176)||(782237-782298)
chr3 (110-193)||(50700000-50700078)
[»] scaffold0176 (1 HSPs)
scaffold0176 (88-222)||(15050-15184)
[»] chr7 (13 HSPs)
chr7 (88-222)||(34328066-34328198)
chr7 (122-222)||(46425315-46425415)
chr7 (113-212)||(16876724-16876823)
chr7 (113-212)||(23185910-23186009)
chr7 (124-222)||(18867925-18868023)
chr7 (130-193)||(2628463-2628526)
chr7 (136-192)||(27311802-27311858)
chr7 (90-192)||(9488798-9488900)
chr7 (116-165)||(32279347-32279396)
chr7 (129-192)||(42691097-42691160)
chr7 (129-192)||(42971671-42971734)
chr7 (140-205)||(48068390-48068455)
chr7 (111-171)||(31658000-31658060)
[»] chr1 (16 HSPs)
chr1 (91-222)||(48843338-48843469)
chr1 (113-222)||(27907687-27907796)
chr1 (113-222)||(27032297-27032406)
chr1 (93-217)||(51748516-51748640)
chr1 (130-192)||(48915013-48915075)
chr1 (130-192)||(48915203-48915265)
chr1 (130-192)||(48915404-48915466)
chr1 (94-191)||(19456339-19456436)
chr1 (98-191)||(50539757-50539850)
chr1 (129-192)||(19431418-19431481)
chr1 (111-192)||(24671138-24671219)
chr1 (89-169)||(26478522-26478602)
chr1 (112-192)||(46325618-46325698)
chr1 (131-176)||(5398066-5398111)
chr1 (128-193)||(7537010-7537075)
chr1 (112-192)||(46325398-46325476)
[»] chr6 (9 HSPs)
chr6 (113-222)||(9928245-9928354)
chr6 (113-222)||(22469683-22469792)
chr6 (113-222)||(7506616-7506725)
chr6 (113-217)||(31743844-31743946)
chr6 (137-193)||(6139326-6139382)
chr6 (142-192)||(9549379-9549429)
chr6 (138-192)||(28067321-28067375)
chr6 (128-192)||(9976984-9977048)
chr6 (156-192)||(28963618-28963654)
[»] chr8 (8 HSPs)
chr8 (119-217)||(33938595-33938693)
chr8 (101-216)||(16467571-16467686)
chr8 (113-216)||(16499813-16499920)
chr8 (130-192)||(4834998-4835060)
chr8 (113-216)||(16508738-16508841)
chr8 (128-192)||(12964329-12964393)
chr8 (142-192)||(44132901-44132951)
chr8 (132-192)||(41474306-41474366)
[»] chr2 (15 HSPs)
chr2 (109-222)||(15141860-15141973)
chr2 (122-206)||(3496792-3496876)
chr2 (138-222)||(19037044-19037128)
chr2 (115-192)||(11226132-11226209)
chr2 (113-192)||(23395917-23395996)
chr2 (88-192)||(41069701-41069805)
chr2 (113-163)||(39707457-39707507)
chr2 (89-175)||(31750424-31750510)
chr2 (115-192)||(6752102-6752179)
chr2 (137-192)||(32832621-32832676)
chr2 (142-177)||(34392353-34392388)
chr2 (111-192)||(36562768-36562849)
chr2 (130-190)||(1208617-1208677)
chr2 (130-192)||(39728987-39729049)
chr2 (128-177)||(14818707-14818756)
[»] chr5 (6 HSPs)
chr5 (113-217)||(37515565-37515669)
chr5 (125-222)||(37480280-37480375)
chr5 (130-222)||(2651623-2651717)
chr5 (129-177)||(21355259-21355307)
chr5 (137-192)||(19824592-19824647)
chr5 (110-177)||(22473342-22473407)
[»] chr4 (9 HSPs)
chr4 (136-217)||(9116237-9116318)
chr4 (130-192)||(46079368-46079430)
chr4 (95-192)||(29544190-29544289)
chr4 (111-188)||(52673230-52673307)
chr4 (131-193)||(53406516-53406578)
chr4 (128-192)||(47907278-47907342)
chr4 (142-192)||(50041842-50041892)
chr4 (142-192)||(50049064-50049114)
chr4 (156-193)||(5052115-5052152)


Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 4 - 376
Target Start/End: Original strand, 39972867 - 39973261
Alignment:
Q  4 gatttattttctcataaacctaaccaaactgttatgcctaggaagttttgttcctcccggttaaattagcgcctctttgtcccaggtagcatttgggtgc 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||||||    
T  39972867 gatttattttctcataaaccaaaccaaactgttatgcctaggaagttttgttcctcctggttaaattagcgcctctttgtccccggtagcacttgggtgc 39972966  T
Q  104 cttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatct 203  Q
    |||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||||||    
T  39972967 cttagttttttgatgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattctctttcatct 39973066  T
Q  204 aaaatgaac----------------ctatggcaccca------tcc-ctttgtccctgcttttttagaagcatcctgatttccgtgacatatatttacgt 280  Q
    |||||||||                ||||||||||||      ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39973067 aaaatgaacctatatcaccaaaaaactatggcacccaagtatttcccctttgtccctgcttttttagaagcatcctgatttccgtgacatatatttacgt 39973166  T
Q  281 gattgtgaagtaacttaatactatgaggtaaaagcaattttaccgcggtattagcaactctattagtagcaagttgttgcacttttttcatatgtt 376  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  39973167 gattgtgaagtaacttaatactatgaggtaaaagcaattttaccgcggtattagcaactctattagtagcaagttgttgcac-tttttcatatgtt 39973261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 4037125 - 4037234
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  4037125 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 4037224  T
Q  213 ctatggcacc 222  Q
    ||||| ||||    
T  4037225 ctatgtcacc 4037234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 49279473 - 49279577
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  49279473 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 49279572  T
Q  213 ctatg 217  Q
     ||||    
T  49279573 ttatg 49279577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 96 - 217
Target Start/End: Original strand, 11233473 - 11233594
Alignment:
Q  96 ttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttc 195  Q
    ||||||| | ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||    
T  11233473 ttgggtgtcatagtttttttgtgtcagaggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctc 11233572  T
Q  196 tttcatctaaaatgaacctatg 217  Q
    ||||||||||||| ||| ||||    
T  11233573 tttcatctaaaataaacttatg 11233594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 99 - 222
Target Start/End: Original strand, 39994161 - 39994284
Alignment:
Q  99 ggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttcttt 198  Q
    |||||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | |||||||||||| |||||    
T  39994161 ggtgccatagttttttggtgccataggtaactttgtatctatctctcttttaacaactcattctctctcatctaaataatttattttaatcattctcttt 39994260  T
Q  199 catctaaaatgaacctatggcacc 222  Q
    |||||||||| ||| |||| ||||    
T  39994261 catctaaaattaacttatgtcacc 39994284  T

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Target: chr3; HSP #6
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 10688590 - 10688671
Alignment:
Q  111 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  10688590 ttttggtgccattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcatt 10688671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 222
Target Start/End: Complemental strand, 39350818 - 39350780
Alignment:
Q  184 ttaatcattttctttcatctaaaatgaacctatggcacc 222  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  39350818 ttaatcattctctttcatctaaaatgaacctatggcacc 39350780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 115 - 176
Target Start/End: Original strand, 782237 - 782298
Alignment:
Q  115 ggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaata 176  Q
    |||| ||| ||| ||||||| |||||||||||| ||||||  ||||||||||||||||||||    
T  782237 ggtgacattggtgactttgtctctatctctctcctaacaaaacattctctctcatcaaaata 782298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 193
Target Start/End: Original strand, 50700000 - 50700078
Alignment:
Q  110 tttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 193  Q
    ||||||||||||| ||||  |||||||  |||||||||||||||   ||||||||||| || |||||| | |||||||||||||    
T  50700000 tttttggtgtcattggtacatttgtgt--atctctctcttaaca---cattctctctcgtctaaataatttattttaatcattt 50700078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 15050 - 15184
Alignment:
Q  88 ggtagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaa 187  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||||    
T  15050 ggtagcatttgggtgccatagttttttggtgtcataggtaactttgtgtctatctctatcttaacaactcattctctctcatcaaaataatttattttaa 15149  T
Q  188 tcattttctttcatctaaaatgaacctatggcacc 222  Q
    ||||| ||||||||||||||||||| |||| ||||    
T  15150 tcattatctttcatctaaaatgaacatatgtcacc 15184  T

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Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 88 - 222
Target Start/End: Original strand, 34328066 - 34328198
Alignment:
Q  88 ggtagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaa 187  Q
    ||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||  ||||||||||||||||||||||||| |||||| | |||||||    
T  34328066 ggtagcacttgggtgccatagttttttggtgtcatagataactttgtgtctatctc--tcttaacaactcattctctctcatctaaataatttattttaa 34328163  T
Q  188 tcattttctttcatctaaaatgaacctatggcacc 222  Q
    ||||| |||||||||||||||||||||||| ||||    
T  34328164 tcattctctttcatctaaaatgaacctatgtcacc 34328198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 122 - 222
Target Start/End: Complemental strand, 46425415 - 46425315
Alignment:
Q  122 taggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcac 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| |||    
T  46425415 taggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcac 46425316  T
Q  222 c 222  Q
    |    
T  46425315 c 46425315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 16876823 - 16876724
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  16876823 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 16876724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 113 - 212
Target Start/End: Complemental strand, 23186009 - 23185910
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  23186009 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 23185910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 124 - 222
Target Start/End: Complemental strand, 18868023 - 18867925
Alignment:
Q  124 ggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  18868023 ggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 18867925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 2628526 - 2628463
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 193  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  | |||||||||||||    
T  2628526 tttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcattt 2628463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 136 - 192
Target Start/End: Complemental strand, 27311858 - 27311802
Alignment:
Q  136 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||||||||| | | |||||||| ||||||||||||| ||||||||||||    
T  27311858 tctatctctctcttaactaataattctctcacatcaaaataaattattttaatcatt 27311802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 9488900 - 9488798
Alignment:
Q  90 tagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatc 189  Q
    ||||| ||||||||| | |  |||||||| ||| | || |||||||| |||||||||||||||||||||||| || |  || |||||| | |||||||||    
T  9488900 tagcacttgggtgccattggcttttggtgccattgatacctttgtgtatatctctctcttaacaactcattccctattctctaaataatttattttaatc 9488801  T
Q  190 att 192  Q
    |||    
T  9488800 att 9488798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 32279396 - 32279347
Alignment:
Q  116 gtgtcataggtaactttgtgtctatctctctcttaacaactcattctctc 165  Q
    ||||||| |||| ||||||||||||||||||||||||||| || ||||||    
T  32279396 gtgtcattggtatctttgtgtctatctctctcttaacaacccactctctc 32279347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 42691160 - 42691097
Alignment:
Q  129 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||| |||||||||||| |||  | | |||||||||||||||||||| | ||||||||||||    
T  42691160 ctttgtctctatctctctcctaattaataattctctctcatcaaaataatttattttaatcatt 42691097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 42971734 - 42971671
Alignment:
Q  129 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||| ||||||||||||||||| |   ||||||||||||| |||||| | ||||||||||||    
T  42971734 ctttgtttctatctctctcttaaccatcaattctctctcatctaaataatttattttaatcatt 42971671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 205
Target Start/End: Complemental strand, 48068455 - 48068390
Alignment:
Q  140 tctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaa 205  Q
    ||||||||||||| ||| ||| ||||||||| ||||||   ||||||||||| |||| ||||||||    
T  48068455 tctctctcttaaccacttattatctctcatctaaataatctattttaatcatcttctctcatctaa 48068390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 31658060 - 31658000
Alignment:
Q  111 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatca 171  Q
    |||||||| |||| || ||||||| ||||| |||||| |||| | ||||||||||||||||    
T  31658060 ttttggtgacatatgtgactttgtctctatatctctcctaaccaatcattctctctcatca 31658000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 1e-44; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 48843338 - 48843469
Alignment:
Q  91 agcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatca 190  Q
    |||| ||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||| |||||| | ||||||||||    
T  48843338 agcacttgggtgccatagttttttgatgtcataggtaactttgtatctatctctctcttaacaattcattctctctcatctaaataatttattttaatca 48843437  T
Q  191 ttttctttcatctaaaatgaacctatggcacc 222  Q
    || |||||||||||||||||||||||| ||||    
T  48843438 ttctctttcatctaaaatgaacctatgtcacc 48843469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 27907687 - 27907796
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  27907687 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 27907786  T
Q  213 ctatggcacc 222  Q
    ||||| ||||    
T  27907787 ctatgtcacc 27907796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 27032406 - 27032297
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||| |||| ||||||||||    
T  27032406 ttggtgtcatgggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctctcatataaaatgaac 27032307  T
Q  213 ctatggcacc 222  Q
     |||| ||||    
T  27032306 atatgtcacc 27032297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 93 - 217
Target Start/End: Original strand, 51748516 - 51748640
Alignment:
Q  93 catttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||| |||||||||| ||  || ||||||||||||||||||| ||| ||||||||||||||||||||||| |||||| | ||||||||||||    
T  51748516 catttgggtgccatagttttttgatgctattggtaactttgtgtctatctttcttttaacaactcattctctctcatctaaataatttattttaatcatt 51748615  T
Q  193 ttctttcatctaaaatgaacctatg 217  Q
     |||||||| ||||||||| |||||    
T  51748616 ctctttcatttaaaatgaatctatg 51748640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 48915075 - 48915013
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915075 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 48915265 - 48915203
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915265 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 48915466 - 48915404
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  48915466 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcatt 48915404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 94 - 191
Target Start/End: Complemental strand, 19456436 - 19456339
Alignment:
Q  94 atttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcat 191  Q
    |||| |||||| || |||||||||||||| || | |||||||||||||||| ||||||||| ||||||||||||||| |||||| | |||||||||||    
T  19456436 attttggtgccataattttttggtgtcattggcacctttgtgtctatctctttcttaacaattcattctctctcatctaaataatttattttaatcat 19456339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 98 - 191
Target Start/End: Complemental strand, 50539850 - 50539757
Alignment:
Q  98 gggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcat 191  Q
    ||||||| |||||||||||||| || |  | |||||||||||||||||||||||||||||||||||| | ||  |||||| | |||||||||||    
T  50539850 gggtgccatagttttttggtgttattgacacctttgtgtctatctctctcttaacaactcattctcttttatttaaataatttattttaatcat 50539757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 192
Target Start/End: Complemental strand, 19431481 - 19431418
Alignment:
Q  129 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||| ||||||||||| | ||||||||||||||| |||||| | ||||||||||||    
T  19431481 ctttgtgtctatatctctcttaaccaatcattctctctcatctaaataatttattttaatcatt 19431418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 192
Target Start/End: Original strand, 24671138 - 24671219
Alignment:
Q  111 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||| | || |||||| || |||| ||||||||| ||||||||||||||||  |||||| | ||||||||||||    
T  24671138 ttttggtgtcattgatacctttgtttccatctttctcttaaccactcattctctctcatttaaataatttattttaatcatt 24671219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 26478522 - 26478602
Alignment:
Q  89 gtagcatttgggtgcc-ttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcat 169  Q
    |||||||||||||||| |||| ||||||||||||| |||| |||||||||||||| ||| ||||||| ||||| ||| ||||    
T  26478522 gtagcatttgggtgccattag-tttttggtgtcattggtacctttgtgtctatctttcttttaacaattcattatctttcat 26478602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 112 - 192
Target Start/End: Complemental strand, 46325698 - 46325618
Alignment:
Q  112 tttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||| ||| ||| ||||||| |||| ||||||| |||  | |||||||||||||||||||||| | ||||||||||||    
T  46325698 tttggtgacattggtgactttgtctctaactctctcataatcaatcattctctctcatcaaaataacttattttaatcatt 46325618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 176
Target Start/End: Complemental strand, 5398111 - 5398066
Alignment:
Q  131 ttgtgtctatctctctcttaacaactcattctctctcatcaaaata 176  Q
    |||| ||||||||||||||||| ||||||||||||||||| |||||    
T  5398111 ttgtctctatctctctcttaaccactcattctctctcatctaaata 5398066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 7537075 - 7537010
Alignment:
Q  128 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 193  Q
    ||||||| |||||||||||| |||| | ||| ||||| | |||||||||| | |||||||||||||    
T  7537075 actttgtctctatctctctcctaaccaatcactctcttttatcaaaataatttattttaatcattt 7537010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 192
Target Start/End: Original strand, 46325398 - 46325476
Alignment:
Q  112 tttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||| ||| ||| ||||||| |||||||||||| |||  | ||||||||  |||||||||||| | ||||||||||||    
T  46325398 tttggtgacattggtgactttgtctctatctctctcataatcaatcattctc--tcatcaaaataatttattttaatcatt 46325476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 86; Significance: 5e-41; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 9928245 - 9928354
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  9928245 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 9928344  T
Q  213 ctatggcacc 222  Q
    ||||| ||||    
T  9928345 ctatgtcacc 9928354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 22469683 - 22469792
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  22469683 ttggtgccataggtaactttgtgtctatctctttcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 22469782  T
Q  213 ctatggcacc 222  Q
    ||||| ||||    
T  22469783 ctatgtcacc 22469792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 113 - 222
Target Start/End: Original strand, 7506616 - 7506725
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||| ||||||||||||| | | ||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||    
T  7506616 ttggtgccataggtaactttatatttatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaac 7506715  T
Q  213 ctatggcacc 222  Q
     |||||||||    
T  7506716 atatggcacc 7506725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 113 - 217
Target Start/End: Original strand, 31743844 - 31743946
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    |||||||||||| ||  ||||||||||||||||| ||||||||| ||||||||  ||| |||||| | |||||||||||| |||||||||||||||||||    
T  31743844 ttggtgtcatagatagttttgtgtctatctctcttttaacaacttattctctc--atctaaataatttattttaatcattctctttcatctaaaatgaac 31743941  T
Q  213 ctatg 217  Q
     ||||    
T  31743942 ttatg 31743946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 137 - 193
Target Start/End: Original strand, 6139326 - 6139382
Alignment:
Q  137 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 193  Q
    |||||||||| ||||| | ||||||||||||||| |||||| | |||||||||||||    
T  6139326 ctatctctcttttaaccattcattctctctcatctaaataatttattttaatcattt 6139382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Original strand, 9549379 - 9549429
Alignment:
Q  142 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||||||||||||||||| ||  |||||| | ||||||||||||    
T  9549379 tctctcttaacaactcattctctctaatttaaataatttattttaatcatt 9549429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 28067321 - 28067375
Alignment:
Q  138 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||  |||| | |||||||||||||||||||||| | ||||||||||||    
T  28067321 tatctctcttctaaccaatcattctctctcatcaaaataatttattttaatcatt 28067375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 128 - 192
Target Start/End: Complemental strand, 9977048 - 9976984
Alignment:
Q  128 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||| ||||||| | || |||||| |||| |||||| |||||||||| | ||||||||||||    
T  9977048 actttgtctctatctatttcataacaaatcatcctctctaatcaaaataatttattttaatcatt 9976984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 192
Target Start/End: Complemental strand, 28963654 - 28963618
Alignment:
Q  156 tcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||||||||||||| | ||||||||||||    
T  28963654 tcattctctctcatcaaaataagttattttaatcatt 28963618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 33938693 - 33938595
Alignment:
Q  119 tcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 217  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||||| ||||| ||||||||||||||||||    
T  33938693 tcataggtaactttgtgtctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattatcttttatctaaaatgaacctatg 33938595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 101 - 216
Target Start/End: Original strand, 16467571 - 16467686
Alignment:
Q  101 tgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttca 200  Q
    |||| ||||||||||||||||||| ||||||||||| |||||||||||||| || | ||||||||||||| |||||| | | |||||||||| |||||||    
T  16467571 tgccatagttttttggtgtcatagataactttgtgtttatctctctcttaataatttattctctctcatctaaataatttagtttaatcattctctttca 16467670  T
Q  201 tctaaaatgaacctat 216  Q
    | ||||||||||||||    
T  16467671 tataaaatgaacctat 16467686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 16499920 - 16499813
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcat----tctctctcatcaaaataaatcattttaatcattttctttcatctaaaat 208  Q
    |||||| ||||| ||||||||||| |||||||||||||| |||| ||    ||||||||||| |||||| | | |||||||||| ||| |||| ||||||    
T  16499920 ttggtgccatagataactttgtgtttatctctctcttaataacttattctctctctctcatctaaataatttagtttaatcattctctctcatataaaat 16499821  T
Q  209 gaacctat 216  Q
    ||||||||    
T  16499820 gaacctat 16499813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 4835060 - 4834998
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||||| ||||||||||||||||||||| ||| | |||||| | ||||||||||||    
T  4835060 tttgtgtctatctttctcttaacaactcattctctttcacctaaataatttattttaatcatt 4834998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 113 - 216
Target Start/End: Complemental strand, 16508841 - 16508738
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctc--atcaaaataaatcattttaatcattttctttcatctaaaatga 210  Q
    |||||| ||||| ||||||||||| |||||||||  ||| |||| ||||||||||  ||| |||||| | | |||||||||| ||| |||| ||||||||    
T  16508841 ttggtgccatagataactttgtgtttatctctct--taataacttattctctctctcatctaaataatttagtttaatcattctctctcatataaaatga 16508744  T
Q  211 acctat 216  Q
    ||||||    
T  16508743 acctat 16508738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 12964329 - 12964393
Alignment:
Q  128 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||||| ||||| ||||  | ||||||||| |||||||||||| | ||||||||||||    
T  12964329 actttgtgtctatttctcttttaatcaatcattctctttcatcaaaataatttattttaatcatt 12964393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 44132951 - 44132901
Alignment:
Q  142 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  44132951 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 44132901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 132 - 192
Target Start/End: Complemental strand, 41474366 - 41474306
Alignment:
Q  132 tgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||| ||||||||||||||| ||| ||||| ||  |||||| | ||||||||||||    
T  41474366 tgtgtctatttctctcttaacaacttattatctcttatttaaataatttattttaatcatt 41474306  T

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Target: chr2 (Bit Score: 74; Significance: 8e-34; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 109 - 222
Target Start/End: Original strand, 15141860 - 15141973
Alignment:
Q  109 ttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaat 208  Q
    |||||||||  ||||| ||||||||||||||||||||| ||||||||| ||||||||||||| |||||| | |||||||||||| |||||||||||||||    
T  15141860 ttttttggtaccatagataactttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattctctttcatctaaaat 15141959  T
Q  209 gaacctatggcacc 222  Q
    ||||||||| ||||    
T  15141960 gaacctatgtcacc 15141973  T

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Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 122 - 206
Target Start/End: Complemental strand, 3496876 - 3496792
Alignment:
Q  122 taggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||| |||||||||    
T  3496876 taggtaactttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctctcatctaaa 3496792  T

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Target: chr2; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 19037128 - 19037044
Alignment:
Q  138 tatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 222  Q
    ||||||||||||||||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||| ||||    
T  19037128 tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctctttcatctaaaatgaacctatgtcacc 19037044  T

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Target: chr2; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 11226132 - 11226209
Alignment:
Q  115 ggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  11226132 ggtgccattggtacctttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcatt 11226209  T

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Target: chr2; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 113 - 192
Target Start/End: Original strand, 23395917 - 23395996
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||| ||||  ||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||    
T  23395917 ttggtgtcattggtacatttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcatt 23395996  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 88 - 192
Target Start/End: Complemental strand, 41069805 - 41069701
Alignment:
Q  88 ggtagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaa 187  Q
    ||||||| ||||||||| |||||||||  ||| || | ||  ||||||||||||| ||||||||||| ||||||||||||||| |||||| | |||||||    
T  41069805 ggtagcacttgggtgccgtagttttttaatgttattgatacatttgtgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaa 41069706  T
Q  188 tcatt 192  Q
    |||||    
T  41069705 tcatt 41069701  T

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Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 39707507 - 39707457
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctc 163  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  39707507 ttggtgccataggtaactttgtgtctatctctctcttaacaactcattctc 39707457  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 175
Target Start/End: Original strand, 31750424 - 31750510
Alignment:
Q  89 gtagcatttgggtgccttagttttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaat 175  Q
    |||||| ||||||||| | |  |||||||| ||| | || |||||||||||||||||||||||||| ||||| ||||||||| ||||    
T  31750424 gtagcacttgggtgccattggcttttggtgccattgatacctttgtgtctatctctctcttaacaattcattttctctcatctaaat 31750510  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 115 - 192
Target Start/End: Complemental strand, 6752179 - 6752102
Alignment:
Q  115 ggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||| | || || ||||||||||||||||||||||||| | | ||||||||| |||||| | ||||||||||||    
T  6752179 ggtgtcattgatacctctgtgtctatctctctcttaacaacttactttctctcatctaaataatttattttaatcatt 6752102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 32832676 - 32832621
Alignment:
Q  137 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||||||| | ||||||||||||||| |||||| | ||||||||||||    
T  32832676 ctatctctctcttaaccattcattctctctcatctaaataatttattttaatcatt 32832621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 142 - 177
Target Start/End: Original strand, 34392353 - 34392388
Alignment:
Q  142 tctctcttaacaactcattctctctcatcaaaataa 177  Q
    ||||||||||||||||||||||||||||||||||||    
T  34392353 tctctcttaacaactcattctctctcatcaaaataa 34392388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 111 - 192
Target Start/End: Complemental strand, 36562849 - 36562768
Alignment:
Q  111 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||| |||| | ||||  |||||||||||||||  | ||||||||||||||| |||||| | |||||| |||||    
T  36562849 ttttggtgtcattggtaccattgttcctatctctctcttaatcattcattctctctcatctaaataatttattttactcatt 36562768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 190
Target Start/End: Original strand, 1208617 - 1208677
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatca 190  Q
    ||||| ||||||||||||||||| | | |||||||||||| ||||||| | ||||||||||    
T  1208617 tttgtctctatctctctcttaaccaataattctctctcattaaaataatttattttaatca 1208677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Original strand, 39728987 - 39729049
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||| ||| ||||| ||||  ||||||||||||| |||||| | ||||||||||||    
T  39728987 tttgtgtctatttctttcttaccaacatattctctctcatctaaataatttattttaatcatt 39729049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 177
Target Start/End: Original strand, 14818707 - 14818756
Alignment:
Q  128 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataa 177  Q
    ||||||| |||||||||||| |||| | | ||||||||||||||||||||    
T  14818707 actttgtctctatctctctcataaccaataattctctctcatcaaaataa 14818756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 7e-31; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 217
Target Start/End: Complemental strand, 37515669 - 37515565
Alignment:
Q  113 ttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaac 212  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||| | |||||||||||| ||||| |||||||||||||    
T  37515669 ttggtatcataggtaactttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattctcttttatctaaaatgaac 37515570  T
Q  213 ctatg 217  Q
     ||||    
T  37515569 ttatg 37515565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 125 - 222
Target Start/End: Original strand, 37480280 - 37480375
Alignment:
Q  125 gtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatggcacc 222  Q
    |||| ||||||||||||||  ||||||||||||||||||||||||| || ||| | |||||||||||||||||||||||||||||||| |||| ||||    
T  37480280 gtaattttgtgtctatctc--tcttaacaactcattctctctcatctaagtaatttattttaatcattttctttcatctaaaatgaacttatgtcacc 37480375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 222
Target Start/End: Original strand, 2651623 - 2651717
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt--ttctttcatctaaaatgaacctatggcacc 222  Q
    ||||||| ||||||||||||| ||||  ||||| ||||||| |||||| | ||||||||||||  ||| | |||||||||||||| |||| ||||    
T  2651623 tttgtgtttatctctctcttaccaacatattctatctcatctaaataatttattttaatcattcattcatacatctaaaatgaacttatgtcacc 2651717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 21355307 - 21355259
Alignment:
Q  129 ctttgtgtctatctctctcttaacaactcattctctctcatcaaaataa 177  Q
    |||||| ||||||||||||||||| | ||||||||||||||| ||||||    
T  21355307 ctttgtttctatctctctcttaaccattcattctctctcatctaaataa 21355259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 137 - 192
Target Start/End: Original strand, 19824592 - 19824647
Alignment:
Q  137 ctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||| ||| | ||||||||||||||| |||||| | ||||||||||||    
T  19824592 ctatctctctctaaaccattcattctctctcatctaaataatttattttaatcatt 19824647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 110 - 177
Target Start/End: Original strand, 22473342 - 22473407
Alignment:
Q  110 tttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataa 177  Q
    ||||||||| ||| |||| |||||||||||  ||||||||||||| | ||| ||||||||| ||||||    
T  22473342 tttttggtgccattggtacctttgtgtcta--tctctcttaacaatttattttctctcatctaaataa 22473407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 7e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 136 - 217
Target Start/End: Complemental strand, 9116318 - 9116237
Alignment:
Q  136 tctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattttctttcatctaaaatgaacctatg 217  Q
    ||||||||| | ||||||||||||||||||||||  |||||| | |||||||||||| ||||||||||||||||||||||||    
T  9116318 tctatctcttttttaacaactcattctctctcatttaaataatttattttaatcattctctttcatctaaaatgaacctatg 9116237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 46079430 - 46079368
Alignment:
Q  130 tttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||| | ||||||||||||    
T  46079430 tttgtgtctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcatt 46079368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 95 - 192
Target Start/End: Complemental strand, 29544289 - 29544190
Alignment:
Q  95 tttgggtgccttagtttttt--ggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||| |||||||||  |||| ||| |  | |||||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||||||||    
T  29544289 tttgggtgccatagttttttttggtgccattgacacctttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcatt 29544190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 111 - 188
Target Start/End: Complemental strand, 52673307 - 52673230
Alignment:
Q  111 ttttggtgtcataggtaactttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaat 188  Q
    |||||||||||| | ||  ||||||||||||||||||||| ||||  |||||||||||||||||||| | ||||||||    
T  52673307 ttttggtgtcattgatatttttgtgtctatctctctcttaccaacatattctctctcatcaaaataatttattttaat 52673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 193
Target Start/End: Complemental strand, 53406578 - 53406516
Alignment:
Q  131 ttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcattt 193  Q
    |||||||||||||||||||||||| ||||| ||||| ||| |||||| | |||||||| ||||    
T  53406578 ttgtgtctatctctctcttaacaattcattttctcttatctaaataatttattttaattattt 53406516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 128 - 192
Target Start/End: Original strand, 47907278 - 47907342
Alignment:
Q  128 actttgtgtctatctctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    |||||||||||||||||||| |||  | ||||  |||||||||||||||| | ||||||||||||    
T  47907278 actttgtgtctatctctctcataaggaatcatcatctctcatcaaaataatttattttaatcatt 47907342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 50041892 - 50041842
Alignment:
Q  142 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  50041892 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 50041842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 142 - 192
Target Start/End: Complemental strand, 50049114 - 50049064
Alignment:
Q  142 tctctcttaacaactcattctctctcatcaaaataaatcattttaatcatt 192  Q
    ||||||||||| | | |||||||||||||||||||| | ||||||||||||    
T  50049114 tctctcttaaccaataattctctctcatcaaaataatttattttaatcatt 50049064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 5052115 - 5052152
Alignment:
Q  156 tcattctctctcatcaaaataaatcattttaatcattt 193  Q
    |||||||||||||||||||||| | |||||||||||||    
T  5052115 tcattctctctcatcaaaataatttattttaatcattt 5052152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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