View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_31 (Length: 369)
Name: NF18704_high_31
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 137; Significance: 2e-71; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 200 - 355
Target Start/End: Complemental strand, 46301935 - 46301782
Alignment:
| Q |
200 |
atatacaatgcaatgttattgatggtaagtaattgagaggctttccagagtgaaactgacatctctctcttttttgcagaagacgggttattgatgacca |
299 |
Q |
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| T |
46301935 |
atatacaatgaaatgttattgatggtaagtaattgagaggctttccagagtgaaactgacatctctct--tttttgcagaagacgggttattgatgacca |
46301838 |
T |
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| Q |
300 |
catcctcctccccttctcttatcttcaaagccatgttcaaacaaattaattaatta |
355 |
Q |
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| T |
46301837 |
catcctcttccccttctcttatcttcaaagccatgttcaaacaaattaattaatta |
46301782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 46302134 - 46302005
Alignment:
| Q |
1 |
taaggtaacaaatggacaatgtaagagaggaagtaggtaaatttgttaaacaagtttattttttcctgtttatctcttccatgcaattattgcattatta |
100 |
Q |
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| T |
46302134 |
taaggtaacaaatg-acaatgtaagagaggaagtaggtaaatttgttaaacaagtttattttttcctgtttatctcttccatgcaattattgcattatta |
46302036 |
T |
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| Q |
101 |
agttgttgatgcgtttcgaatattaccacgt |
131 |
Q |
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| T |
46302035 |
agttgtttatgcgtttcgaatattaccacgt |
46302005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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