View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_32 (Length: 363)
Name: NF18704_high_32
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 25325237 - 25325587
Alignment:
| Q |
1 |
ccaaacacaaagtcagaagggaattcatctctgctcaaaccataagcactagggaggaggattactagtaacactactactgcaa---------cattca |
91 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | |||| |
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| T |
25325237 |
ccaaacacaaagtaagaagggaattcatctctgctcaaaccataagcactagggaggaggattactagtaacactactgcaacatttagtaattctttca |
25325336 |
T |
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| Q |
92 |
aagcaaacaccttcaagatcaaagccatattaatttcttctgttttcattgcgttaatcaaacttatatgacatacattattttattcagttcaggttat |
191 |
Q |
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| T |
25325337 |
atgctaacaccttcaagatcaaagccatattaatttcttctgttttcattgcgttaatcaaacttatatgacatacattattttattcagttcaggttat |
25325436 |
T |
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| Q |
192 |
ttaagaatatacatgtcaagatttcactttggaagcttactaaacacgtcacgtatattatatggctacgtgtagatttggtacttacattaaataagga |
291 |
Q |
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| T |
25325437 |
ttaagaatatacatgtcaagattccagtttggaagcttactaaacacgtcacg-----tatatggctacgtgtagatttggtacttacattaaataagga |
25325531 |
T |
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| Q |
292 |
cacaaaatattcaacatattaattaattaatggcaacattggatcaatgttataat |
347 |
Q |
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| T |
25325532 |
cacaaaatattcaacatattaattaactaatggcaacattggatcaatgttataat |
25325587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 25330566 - 25330640
Alignment:
| Q |
1 |
ccaaacacaaagtcagaagggaattcatctctgctcaaaccataagcactagggaggaggattactagtaacact |
75 |
Q |
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|||||||||||||||||||||||||||||| || |||||| ||||||||||| || |||||||||| ||||||| |
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| T |
25330566 |
ccaaacacaaagtcagaagggaattcatctttgttcaaactataagcactagagaaaaggattactactaacact |
25330640 |
T |
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