View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_4 (Length: 692)
Name: NF18704_high_4
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 642; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 642; E-Value: 0
Query Start/End: Original strand, 18 - 684
Target Start/End: Complemental strand, 3574265 - 3573603
Alignment:
| Q |
18 |
ttaagaagtcatcaagaagcatttcagatgcttcattcatggaagaggaaaacgatgttggagatattacacaggatagaaggagaatggaaaatcctaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3574265 |
ttaagaagtcatcaagaagcatttcagatgcttcattcatggaagaggaaaacgatgttggagatattacacaggatagaaggagaatggaaaatcctaa |
3574166 |
T |
|
| Q |
118 |
agcaagatcaattgttttgtttctgcgtttgattacatgtatgcctgaaggattaattctgctgccatcatagtctgaatatgtatttggttattttaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3574165 |
agcaagatcaattgttttgtttctgcgtttgattacatgtatgcctgaaggattaattctgctgccatcatagtctgaatatgtatttggttattttaaa |
3574066 |
T |
|
| Q |
218 |
ttgcaatggaataacgtgaattcataaaaagaatcacattttgtagcttcccgactacataaatacagtgagaatgctgaactagtcttgaccataatga |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3574065 |
ttgcaatggaataacgtgaattcataaaaagaatcacattttgtagcttcccgactacataaatacagtgagaatgctgaactagtcttgaccataatga |
3573966 |
T |
|
| Q |
318 |
gaaagaatgctgataaatgcagtgaggtctgacactagtttcgaccataattgatgtcatctttgaactagaaagtgtctatttgtgaaacatcatgcta |
417 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3573965 |
gaa----tgctgataaatgcagtgaggtctgacactagtttcgaccataattgatgtcatctttgaactagaaagtgtctatttgtgaaacatcatgcta |
3573870 |
T |
|
| Q |
418 |
gcagccttttgcaatttacaaatgcacacaaaccatgtctctgatcataaattgattgccaattccatgacactgatagtactttctgtgatagcaaaac |
517 |
Q |
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| T |
3573869 |
gcagccttttgcaatttacaaatgcacacaaaccatgtctctgatcataaattgattgccaaatccatgacactgataatactttctgtgatagcaaaac |
3573770 |
T |
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| Q |
518 |
ttttgatcataaattcataattgatcaaatcattatagcagtacaacttaatcatccatagaacaaagttaaatgagcaagataagttaaattgaccctt |
617 |
Q |
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| T |
3573769 |
ttttgatcataaattcataattgatcaaatcattatagcagtacaacttaatcatccatagaacaaagttaaatgagcaagataagttaaattgaccctt |
3573670 |
T |
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| Q |
618 |
gaactacaattctgctgcatgaatcggagctggtcatacaatcaaccatgccgtccgttttcttctc |
684 |
Q |
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| T |
3573669 |
gaactacaattctgctgcatgaatcggagctggtcatacaatcaaccatgccgtccgttttcttctc |
3573603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 72 - 276
Target Start/End: Complemental strand, 3551132 - 3550933
Alignment:
| Q |
72 |
atgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgttttgtttctgcgtttgattacatgtatgcctgaaggatt |
171 |
Q |
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||||||| ||||||||||||||||||| | ||| ||||||||| ||||||||| || |||| ||| |||||||||||||||||| | ||||||| |
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| T |
3551132 |
atgttggggatattacacaggatagaaagtgaaaggaaaatccaaaagcaagaataactgtt------ctgggtttgattacatgtatgcataaaggatt |
3551039 |
T |
|
| Q |
172 |
aattctgctgccatcatagtctgaatat-gtatttggttattttaaattgcaatggaataacgtgaattcataaaaagaatcacattttgtagcttcccg |
270 |
Q |
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||| || || ||||||||| |||||||| |||| ||||| | ||| || ||||| |||||| ||||||| ||||| ||||||||||||||||||||| | |
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| T |
3551038 |
aatcctccttccatcataggctgaatattgtatctggttttcataagttacaatgaaataacatgaattcgtaaaatgaatcacattttgtagcttccag |
3550939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 1685481 - 1685424
Alignment:
| Q |
71 |
gatgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaa |
128 |
Q |
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| T |
1685481 |
gatgttggagatattacacaagatagaaggtgaaaggaaaatcgaaaagcaagatcaa |
1685424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 3570771 - 3570703
Alignment:
| Q |
71 |
gatgttggagatattacacaggatagaaggagaatggaaaatcctaaagcaagatcaattgttttgttt |
139 |
Q |
| |
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|||||||||||||||||||| ||||||||| ||| |||||| |||||||||||| ||||| ||||| |
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| T |
3570771 |
gatgttggagatattacacaagatagaaggtgaaatgaaaattgaaaagcaagatcagttgttctgttt |
3570703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 233 - 265
Target Start/End: Complemental strand, 3560036 - 3560004
Alignment:
| Q |
233 |
gtgaattcataaaaagaatcacattttgtagct |
265 |
Q |
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| T |
3560036 |
gtgaattcataaaaataatcacattttgtagct |
3560004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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