View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_42 (Length: 285)
Name: NF18704_high_42
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_42 |
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| [»] scaffold0477 (1 HSPs) |
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Alignment Details
Target: scaffold0477 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 757 - 969
Alignment:
| Q |
1 |
acagtaaaactctagtattatctaaatgcaagtttaagtgcttgtatgtgttccagaacctatatccaaactgcgttttaagctt-attttctattttct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | | | | ||| ||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
757 |
acagtaaaactctagtattatctaaatgcaagtttaagtgcttttttttttcccaaaacctatatccaaactgcgttttaagctttattttctatttttt |
856 |
T |
|
| Q |
100 |
gcttaacagttcattttttatccacataaatcattattcttgctaatgttggccatatgcnnnnnnnacaattgataagacatatgaaatatttcctatc |
199 |
Q |
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| T |
857 |
gcttaacagttcattttttatctacataaatcattattcttgctaatgttggccatatgctttttttacaattgataagaaatatgaaatatttcctatc |
956 |
T |
|
| Q |
200 |
aatatatcaacta |
212 |
Q |
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||||||||||||| |
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| T |
957 |
aatatatcaacta |
969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 4649740 - 4649952
Alignment:
| Q |
1 |
acagtaaaactctagtattatctaaatgcaagtttaagtgcttgtatgtgttccagaacctatatccaaactgcgttttaagctt-attttctattttct |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| | | | | ||| ||||||||||||||||||||||||||||| |||||||||||| | |
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| T |
4649740 |
acagtaaaactctagtattatctaaatgcaagtttaagtgcttttttttttcccaaaacctatatccaaactgcgttttaagctttattttctatttttt |
4649839 |
T |
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| Q |
100 |
gcttaacagttcattttttatccacataaatcattattcttgctaatgttggccatatgcnnnnnnnacaattgataagacatatgaaatatttcctatc |
199 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
4649840 |
gcttaacagttcattttttatctacataaatcattattcttgctaatgttggccatatgctttttttacaattgataagaaatatgaaatatttcctatc |
4649939 |
T |
|
| Q |
200 |
aatatatcaacta |
212 |
Q |
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||||||||||||| |
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| T |
4649940 |
aatatatcaacta |
4649952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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