View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_48 (Length: 263)
Name: NF18704_high_48
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_48 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 256
Target Start/End: Complemental strand, 45427457 - 45427220
Alignment:
| Q |
18 |
tcaatctcattaattgatcgnnnnnnnccttgaaactgaccccaaaccagtacaccaataaaataatttcttcataaatactactgtaagtgtaaaccaa |
117 |
Q |
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| T |
45427457 |
tcaatctcattaattgatcgaaaaaaaccttgaaactgaccccaaaccagtacaccaataaaataatttcttcataaatactactgtaagtgtaaaccaa |
45427358 |
T |
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| Q |
118 |
ccaattaagctgaaattttagaaagccacgtttgtttgacattgacactttaaaaatacggagttctacaattatggcaccaaacaagtatccccaaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45427357 |
ccaattaagctgaaattttagaaagccacgttagtttgacattgacactttaaaaatacggagttctacaattatggcaccaaacaagtatacccaaaaa |
45427258 |
T |
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| Q |
218 |
gtgtaaattacaatagtcataatcaattcctagtataat |
256 |
Q |
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||||||||||||||| |||||||||||| |||||||||| |
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| T |
45427257 |
gtgtaaattacaatattcataatcaatt-ctagtataat |
45427220 |
T |
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