View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_high_5 (Length: 615)

Name: NF18704_high_5
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_high_5
NF18704_high_5
[»] chr7 (43 HSPs)
chr7 (287-601)||(11206185-11206499)
chr7 (287-601)||(47069610-47069934)
chr7 (288-601)||(3213039-3213362)
chr7 (288-601)||(12117542-12117860)
chr7 (287-601)||(47204274-47204598)
chr7 (288-601)||(10671763-10672085)
chr7 (287-436)||(8768950-8769104)
chr7 (288-491)||(27054670-27054872)
chr7 (299-429)||(47903201-47903331)
chr7 (291-491)||(32823550-32823746)
chr7 (288-491)||(31982933-31983135)
chr7 (288-500)||(18673121-18673330)
chr7 (288-430)||(7209267-7209409)
chr7 (288-457)||(13852251-13852425)
chr7 (291-491)||(31876575-31876766)
chr7 (492-601)||(8768834-8768943)
chr7 (291-457)||(36507892-36508058)
chr7 (299-491)||(24361433-24361622)
chr7 (294-412)||(10069142-10069260)
chr7 (288-409)||(5932638-5932759)
chr7 (291-491)||(1335264-1335466)
chr7 (323-412)||(43429153-43429242)
chr7 (359-491)||(24361227-24361357)
chr7 (292-457)||(48675058-48675228)
chr7 (288-429)||(2408960-2409106)
chr7 (295-457)||(11216104-11216266)
chr7 (290-429)||(7760049-7760188)
chr7 (288-392)||(32942115-32942219)
chr7 (288-360)||(45898128-45898200)
chr7 (293-392)||(8568590-8568689)
chr7 (288-390)||(7205916-7206018)
chr7 (390-489)||(22366500-22366597)
chr7 (335-392)||(8118316-8118373)
chr7 (288-320)||(29628050-29628082)
chr7 (288-427)||(524867-525006)
chr7 (301-392)||(26215160-26215251)
chr7 (363-392)||(2308151-2308180)
chr7 (331-392)||(23729373-23729434)
chr7 (359-392)||(31287815-31287848)
chr7 (291-320)||(40848796-40848825)
chr7 (399-443)||(10338791-10338835)
chr7 (359-427)||(20334597-20334665)
chr7 (288-320)||(29211756-29211788)
[»] chr2 (25 HSPs)
chr2 (287-601)||(9811332-9811646)
chr2 (288-601)||(36413457-36413780)
chr2 (288-601)||(16578578-16578901)
chr2 (288-491)||(44979709-44979909)
chr2 (291-491)||(25298190-25298388)
chr2 (288-491)||(18356846-18357048)
chr2 (288-489)||(42785565-42785769)
chr2 (311-457)||(11375867-11376013)
chr2 (287-457)||(17916827-17916992)
chr2 (291-412)||(44035251-44035373)
chr2 (287-412)||(19937141-19937265)
chr2 (287-443)||(1330951-1331107)
chr2 (287-443)||(41461023-41461184)
chr2 (288-443)||(15320564-15320719)
chr2 (289-489)||(34910254-34910455)
chr2 (286-392)||(17762682-17762788)
chr2 (523-584)||(42785208-42785269)
chr2 (287-419)||(12041598-12041730)
chr2 (288-392)||(27301520-27301624)
chr2 (353-444)||(44085497-44085588)
chr2 (287-392)||(5862667-5862772)
chr2 (290-412)||(28790450-28790572)
chr2 (365-403)||(44986082-44986120)
chr2 (288-376)||(12884473-12884561)
chr2 (399-435)||(42350789-42350825)
[»] chr6 (28 HSPs)
chr6 (287-601)||(12270498-12270812)
chr6 (288-458)||(5874112-5874292)
chr6 (288-491)||(10590793-10590997)
chr6 (288-491)||(35040155-35040350)
chr6 (287-491)||(5287842-5288045)
chr6 (287-491)||(15859667-15859877)
chr6 (287-491)||(10494309-10494522)
chr6 (286-491)||(10390960-10391164)
chr6 (288-412)||(13810885-13811009)
chr6 (288-455)||(25136714-25136886)
chr6 (501-591)||(5866933-5867023)
chr6 (287-412)||(33550261-33550386)
chr6 (344-412)||(13801998-13802066)
chr6 (288-435)||(6266846-6266993)
chr6 (303-491)||(33550277-33550472)
chr6 (288-435)||(9686000-9686147)
chr6 (289-427)||(24644954-24645091)
chr6 (287-425)||(29048068-29048206)
chr6 (292-392)||(892377-892477)
chr6 (340-391)||(30752525-30752576)
chr6 (335-427)||(14940573-14940665)
chr6 (286-320)||(20500505-20500539)
chr6 (359-392)||(19135148-19135181)
chr6 (359-392)||(22413851-22413884)
chr6 (288-320)||(8135378-8135410)
chr6 (335-443)||(9909057-9909165)
chr6 (288-320)||(13532390-13532422)
chr6 (399-435)||(28610676-28610712)
[»] scaffold0308 (1 HSPs)
scaffold0308 (287-601)||(5710-6024)
[»] chr5 (33 HSPs)
chr5 (288-601)||(27886243-27886556)
chr5 (288-601)||(667441-667754)
chr5 (288-609)||(30001954-30002274)
chr5 (288-601)||(15068403-15068726)
chr5 (288-601)||(11917348-11917671)
chr5 (287-609)||(701161-701493)
chr5 (288-609)||(8408933-8409262)
chr5 (288-491)||(42544601-42544802)
chr5 (289-491)||(30265728-30265930)
chr5 (292-491)||(333217-333413)
chr5 (292-491)||(2226817-2227020)
chr5 (288-491)||(38433640-38433847)
chr5 (288-491)||(12681009-12681204)
chr5 (290-457)||(17085208-17085375)
chr5 (283-429)||(12166163-12166307)
chr5 (287-491)||(9160922-9161131)
chr5 (356-491)||(35358947-35359085)
chr5 (323-491)||(36177034-36177210)
chr5 (356-430)||(10174096-10174170)
chr5 (291-412)||(36103627-36103749)
chr5 (370-491)||(32521154-32521280)
chr5 (291-360)||(23780770-23780839)
chr5 (291-360)||(23867723-23867792)
chr5 (288-392)||(27572081-27572185)
chr5 (288-412)||(9988876-9988995)
chr5 (491-584)||(35359344-35359437)
chr5 (359-427)||(36567735-36567803)
chr5 (287-392)||(25495026-25495131)
chr5 (399-443)||(41454927-41454971)
chr5 (353-392)||(40692502-40692541)
chr5 (287-392)||(34881360-34881465)
chr5 (287-320)||(41061739-41061772)
chr5 (399-443)||(27572020-27572064)
[»] chr3 (33 HSPs)
chr3 (288-601)||(51149485-51149797)
chr3 (288-601)||(34794537-34794849)
chr3 (287-601)||(35402027-35402346)
chr3 (288-601)||(10369154-10369477)
chr3 (288-515)||(4669550-4669787)
chr3 (360-601)||(33360968-33361219)
chr3 (288-491)||(6004327-6004527)
chr3 (288-491)||(9827719-9827918)
chr3 (287-491)||(32880242-32880445)
chr3 (288-491)||(50562509-50562710)
chr3 (290-457)||(21586814-21586981)
chr3 (353-434)||(48032843-48032923)
chr3 (524-601)||(4669416-4669493)
chr3 (287-412)||(43030358-43030483)
chr3 (286-392)||(26291992-26292098)
chr3 (288-443)||(55467622-55467782)
chr3 (287-443)||(38651974-38652129)
chr3 (291-407)||(39097891-39098010)
chr3 (292-392)||(17144766-17144865)
chr3 (531-581)||(9817756-9817806)
chr3 (294-392)||(20846418-20846518)
chr3 (399-443)||(20038443-20038487)
chr3 (359-443)||(45915189-45915272)
chr3 (288-371)||(35532193-35532276)
chr3 (287-381)||(2832446-2832540)
chr3 (287-392)||(26758165-26758270)
chr3 (287-392)||(40483864-40483969)
chr3 (291-392)||(42363261-42363362)
chr3 (359-443)||(51191718-51191807)
chr3 (292-392)||(54121967-54122067)
chr3 (399-457)||(43030485-43030543)
chr3 (378-491)||(35532091-35532196)
chr3 (288-427)||(52631980-52632120)
[»] chr4 (49 HSPs)
chr4 (288-601)||(36077515-36077828)
chr4 (288-601)||(50570775-50571098)
chr4 (288-601)||(29636716-29637039)
chr4 (287-601)||(42557666-42557989)
chr4 (10-204)||(4792357-4792551)
chr4 (287-514)||(29644029-29644266)
chr4 (287-491)||(30193914-30194117)
chr4 (288-491)||(40900018-40900223)
chr4 (291-491)||(5261904-5262101)
chr4 (288-491)||(48996027-48996228)
chr4 (288-491)||(40806751-40806958)
chr4 (287-457)||(43630519-43630689)
chr4 (288-500)||(32136635-32136850)
chr4 (288-491)||(6333259-6333465)
chr4 (287-454)||(23937492-23937659)
chr4 (290-491)||(51394663-51394862)
chr4 (291-491)||(52344683-52344876)
chr4 (207-287)||(4792596-4792676)
chr4 (287-491)||(10218620-10218832)
chr4 (289-427)||(48293406-48293544)
chr4 (287-404)||(13690872-13690989)
chr4 (368-487)||(8176540-8176657)
chr4 (287-443)||(36106399-36106561)
chr4 (288-412)||(23120273-23120397)
chr4 (287-378)||(31301237-31301328)
chr4 (293-427)||(23449985-23450119)
chr4 (288-441)||(45983326-45983479)
chr4 (523-599)||(5261537-5261611)
chr4 (287-392)||(5122420-5122525)
chr4 (289-412)||(48338285-48338407)
chr4 (360-443)||(48602504-48602587)
chr4 (288-392)||(20986364-20986468)
chr4 (531-599)||(51395165-51395231)
chr4 (288-392)||(32223355-32223459)
chr4 (287-349)||(41260214-41260276)
chr4 (360-440)||(29232767-29232847)
chr4 (340-427)||(41325090-41325172)
chr4 (370-412)||(35233314-35233356)
chr4 (333-379)||(54274066-54274112)
chr4 (287-320)||(34277456-34277489)
chr4 (359-430)||(4688690-4688766)
chr4 (399-443)||(15723945-15723989)
chr4 (399-443)||(18319546-18319590)
chr4 (399-443)||(18399091-18399135)
chr4 (399-443)||(23625876-23625920)
chr4 (397-425)||(28147836-28147864)
chr4 (288-320)||(42430499-42430531)
chr4 (368-412)||(51907085-51907129)
chr4 (399-435)||(54274008-54274044)
[»] chr8 (25 HSPs)
chr8 (287-601)||(3006390-3006713)
chr8 (288-601)||(5803062-5803386)
chr8 (287-491)||(10661095-10661297)
chr8 (291-491)||(44672734-44672932)
chr8 (288-491)||(36910270-36910471)
chr8 (288-408)||(33068208-33068328)
chr8 (291-491)||(14549169-14549376)
chr8 (287-487)||(18169961-18170161)
chr8 (287-457)||(18633558-18633729)
chr8 (288-453)||(3681876-3682035)
chr8 (292-403)||(6200878-6200989)
chr8 (290-376)||(30392083-30392169)
chr8 (287-392)||(44336713-44336819)
chr8 (287-443)||(28073176-28073332)
chr8 (357-427)||(7428434-7428504)
chr8 (373-435)||(38926419-38926481)
chr8 (288-443)||(40436378-40436539)
chr8 (288-381)||(12883777-12883870)
chr8 (288-392)||(11218892-11218996)
chr8 (363-427)||(12660257-12660321)
chr8 (402-443)||(12193443-12193484)
chr8 (402-443)||(12437871-12437912)
chr8 (291-392)||(24682126-24682227)
chr8 (363-412)||(31497615-31497664)
chr8 (399-443)||(9012817-9012861)
[»] chr1 (38 HSPs)
chr1 (286-609)||(20493689-20494025)
chr1 (288-601)||(8211221-8211546)
chr1 (288-601)||(5155150-5155483)
chr1 (288-491)||(51252354-51252555)
chr1 (287-491)||(33474389-33474590)
chr1 (291-491)||(1161682-1161879)
chr1 (286-412)||(16529516-16529642)
chr1 (288-457)||(42789579-42789743)
chr1 (289-412)||(32953982-32954104)
chr1 (486-601)||(29707928-29708043)
chr1 (299-457)||(29388986-29389149)
chr1 (288-491)||(39256570-39256776)
chr1 (288-491)||(45691739-45691945)
chr1 (301-491)||(44918503-44918690)
chr1 (288-412)||(33910797-33910922)
chr1 (288-392)||(36203479-36203583)
chr1 (293-457)||(11898958-11899127)
chr1 (291-440)||(27507479-27507628)
chr1 (284-392)||(21685578-21685686)
chr1 (287-392)||(35980423-35980528)
chr1 (399-491)||(32954106-32954197)
chr1 (287-392)||(12973501-12973606)
chr1 (333-443)||(16537822-16537932)
chr1 (401-491)||(24910987-24911076)
chr1 (287-392)||(40095457-40095562)
chr1 (399-435)||(33769936-33769972)
chr1 (292-443)||(34914080-34914231)
chr1 (291-392)||(32910405-32910506)
chr1 (288-392)||(8165587-8165691)
chr1 (401-444)||(26345032-26345075)
chr1 (399-457)||(16529461-16529519)
chr1 (288-381)||(6248019-6248112)
chr1 (399-443)||(11074374-11074418)
chr1 (288-316)||(11074510-11074538)
chr1 (399-443)||(17651815-17651859)
chr1 (405-457)||(33910742-33910794)
chr1 (399-443)||(40095396-40095440)
chr1 (292-392)||(52828769-52828868)
[»] scaffold0059 (1 HSPs)
scaffold0059 (288-491)||(69469-69680)
[»] scaffold0013 (2 HSPs)
scaffold0013 (288-500)||(128579-128799)
scaffold0013 (288-412)||(105972-106096)
[»] scaffold0029 (1 HSPs)
scaffold0029 (288-457)||(40541-40725)
[»] scaffold0204 (1 HSPs)
scaffold0204 (289-412)||(25807-25929)


Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 43)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 287 - 601
Target Start/End: Complemental strand, 11206499 - 11206185
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  11206499 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgattt 11206400  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  11206399 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgc 11206300  T
Q  487 caactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattac 586  Q
    |||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11206299 caactagtaccaaacaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattac 11206200  T
Q  587 agtaccaaaataata 601  Q
    |||||||||||||||    
T  11206199 agtaccaaaataata 11206185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 287 - 601
Target Start/End: Original strand, 47069610 - 47069934
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47069610 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 47069709  T
Q  387 ttaaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaact 476  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  47069710 ttaaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaact 47069809  T
Q  477 ctaatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaa 576  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47069810 ctaatattgccaactagtaccaaacaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaa 47069909  T
Q  577 ataacattacagtaccaaaataata 601  Q
    |||||||||||||||||||||||||    
T  47069910 ataacattacagtaccaaaataata 47069934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 3213362 - 3213039
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3213362 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 3213263  T
Q  388 taaaaagtcatccaaa----------ccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    ||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||| ||    
T  3213262 taaaaagtcatccaaatcaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaagtc 3213163  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    |||||||||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3213162 taatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 3213063  T
Q  578 taacattacagtaccaaaataata 601  Q
    ||||||||||||||||||||||||    
T  3213062 taacattacagtaccaaaataata 3213039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 12117542 - 12117860
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  12117542 taggggtgtttgcggtgcggtttggttcggtttcaagtataataatcatccaaaccgcgagagaaaaaagcatgcagtttggtttggttcggttgatttt 12117641  T
Q  388 taaaaagtcat-----ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaata 482  Q
    |||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  12117642 taaaaagtcatccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaata 12117741  T
Q  483 ttgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataaca 582  Q
    ||||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  12117742 ttgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaaattatttatctaaaataaca 12117841  T
Q  583 ttacagtaccaaaataata 601  Q
    |||||||||||||||||||    
T  12117842 ttacagtaccaaaataata 12117860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 287 - 601
Target Start/End: Complemental strand, 47204598 - 47204274
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47204598 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataacaatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 47204499  T
Q  387 ttaaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaact 476  Q
    ||||||||||||||||||||||||||          ||||||||| ||||||||||||||||||||||||||||||||||||       |||||||||||    
T  47204498 ttaaaaagtcatccaaaccaaaccaaaccaaatcaatgcggtttgaattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaact 47204399  T
Q  477 ctaatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaa 576  Q
    ||||||||||||||||||||||| |||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47204398 ctaatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaa 47204299  T
Q  577 ataacattacagtaccaaaataata 601  Q
    |||||||||||||||||||||||||    
T  47204298 ataacattacagtaccaaaataata 47204274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 10671763 - 10672085
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10671763 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 10671862  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||||||    
T  10671863 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcagttaatcgcgagataaataaaaaaattacattaactc 10671962  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    |||||||||||||||||||||| |||||||||||||||       ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  10671963 taatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagt-ccaaaatagcattacaataccaataaaagttatttatctaaaa 10672061  T
Q  578 taacattacagtaccaaaataata 601  Q
    |||||||||||||| |||||||||    
T  10672062 taacattacagtactaaaataata 10672085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 287 - 436
Target Start/End: Complemental strand, 8769104 - 8768950
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8769104 ttaggggtgttcgcggtgcggtttggttcggtttcaagtataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 8769005  T
Q  387 ttaaaaagtcatccaaaccaaaccaa-----tgcggtttggattggttcagttga 436  Q
    ||||||||||||||||||||||| ||     ||||||||||||||||||||||||    
T  8769004 ttaaaaagtcatccaaaccaaacgaaactaatgcggtttggattggttcagttga 8768950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 27054872 - 27054670
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| |||||||||||||||| |||||  |||| || | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  27054872 taggggtgtttgcggtgcggtttggtttggttttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttt 27054773  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |||  ||||||| ||| |||||||||        ||||||||||||||||||| ||    
T  27054772 taaaaagccatccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcacgagataaa-aaaaatattacattaactctaatatttcc 27054674  T
Q  488 aact 491  Q
    ||||    
T  27054673 aact 27054670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 299 - 429
Target Start/End: Original strand, 47903201 - 47903331
Alignment:
Q  299 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 398  Q
    |||||||||||||||||||||| |||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  47903201 gcggtgcggtttggttcggttttaagcataaaaatcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 47903300  T
Q  399 ccaaaccaaaccaatgcggtttggattggtt 429  Q
    |||||||||||||||| |  |||||||||||    
T  47903301 ccaaaccaaaccaatgtgacttggattggtt 47903331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 291 - 491
Target Start/End: Original strand, 32823550 - 32823746
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||| || |||||| |||||||||| |||  ||||||| | ||||||||| ||||||| | ||||||||||||||||||| ||||||||||||||||||    
T  32823550 gggtgctcacggtgctgtttggttcgatttttagcataaaagtcatccaaatcgcgagataaaaaagcatgcggtttggtt-ggttcggttgatttttaa 32823648  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaac 490  Q
    |||||||||||||||||| ||||||||||||||||||||| |||  ||||||| |||||||||||||        |||||||||||||||||||||||||    
T  32823649 aaagtcatccaaaccaaatcaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaa---aaatattacattaactctaatattgccaac 32823745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 31983135 - 31982933
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||| ||||||||||  ||||||| | | ||||||||||||||| | ||||  |||| |||||||||||||| |||||||||    
T  31983135 taggggtgttcgcggtgcggtt-ggttcggttttgagcataaaagttatccaaaccgcgagataaaaaaatatgcagtttggtttggttcagttgatttt 31983037  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||||||||||||||||||||||||| | || |||||||||||| |||| ||||||| || ||||||||||        ||||||||||||||||||||||    
T  31983036 taaaaagtcatccaaaccaaaccaacgtgggttggattggttcggttggtgcggtttattgcgagataaaaaaatatattacattaactctaatattgcc 31982937  T
Q  488 aact 491  Q
    ||||    
T  31982936 aact 31982933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 288 - 500
Target Start/End: Complemental strand, 18673330 - 18673121
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||| |||||||||||||  ||||||| | ||||||||||||||||| | ||||||||| | |||||||| |||| ||||| |||    
T  18673330 taggggtgttcgcggtgcgatttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtgatttggtttagttcagttgaattt 18673231  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
     |||||||||||||||||||| ||||| || |||||||||||| |||| ||||||| |||||||||||||        |||||||||||||||||||| |    
T  18673230 caaaaagtcatccaaaccaaaacaatgtggcttggattggttcggttggtgcggtttatcgcgagataaa---aaatattacattaactctaatattgac 18673134  T
Q  488 aactagtaccaaa 500  Q
    |||| || |||||    
T  18673133 aacttgttccaaa 18673121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 288 - 430
Target Start/End: Complemental strand, 7209409 - 7209267
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||| |||||||||||||||||||  |  |||| | ||||||||||| ||||| | |||||||| ||||||||||||||||||||||||||    
T  7209409 taggggtgttcgcagtgcggtttggttcggttttgaatataaaagtcatccaaaccacgagataaaaaagcatacggtttggtttggttcggttgatttt 7209310  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttc 430  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  7209309 taaaaagtcatccaaaccaaaccaatgcgtcttggattggttc 7209267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 288 - 457
Target Start/End: Original strand, 13852251 - 13852425
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| || ||| |||||||||||||||  ||||||| | |||||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  13852251 taggggtgtttgcagtgtggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttt 13852350  T
Q  388 taaaaagtcat-----ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    |||||||||||     |||||||||||||||||||||||||||||||| |||  || |||| ||| |||||||||    
T  13852351 taaaaagtcatccaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgaggtttatcacgagataaa 13852425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 291 - 491
Target Start/End: Complemental strand, 31876766 - 31876575
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||||||||||||||||| ||||||||  ||||||| | ||||||||||||||| | | |||||||||| |||||||| ||||||||||||||||||    
T  31876766 gggtgttcgcggtgcggtttg-ttcggttttgagcataaaagtcatccaaaccgcgaaataaaaaagcatgcagtttggttcggttcggttgatttttaa 31876668  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaac 490  Q
    ||||||||      ||||||||||||||||||||||||||| ||  ||||||| |||||||||||||        |||||||||||||||||||||||||    
T  31876667 aaagtcat-----tcaaaccaatgcggtttggattggttcaatttgtgcggtttatcgcgagataaa---aaatattacattaactctaatattgccaac 31876576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 492 - 601
Target Start/End: Complemental strand, 8768943 - 8768834
Alignment:
Q  492 agtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattacagtac 591  Q
    |||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8768943 agtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattacagtac 8768844  T
Q  592 caaaataata 601  Q
    ||||||||||    
T  8768843 caaaataata 8768834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 291 - 457
Target Start/End: Original strand, 36507892 - 36508058
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    |||||||| ||||| |||||||||| | || |||||| | | |||||||||  | |||| |||||| ||||| ||||| |||| ||||||||||||||||    
T  36507892 gggtgttcacggtgtggtttggttcagatttaagcattaaagtcatccaaattgtgagatagaaaatcatgcagtttgatttgattcggttgatttttaa 36507991  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| ||  ||| |||| ||||||||    
T  36507992 aaagtcatccaaaccaaaccaatgcggcttggattggttcggttggtgtcgtttatcgtgagataaa 36508058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 299 - 491
Target Start/End: Complemental strand, 24361622 - 24361433
Alignment:
Q  299 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 398  Q
    ||||||||||||||||||||||  || | || | ||||| |||||| |||| | |||| |||| ||||||||||||||| ||||||||| ||||| ||||    
T  24361622 gcggtgcggtttggttcggttttgagaaaaa-agtcatctaaaccgtgagataaaaaaacatgtggtttggtttggttcagttgattttaaaaaaatcat 24361524  T
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaact 491  Q
    |||||||||||||||||||||||||||||||| |||  ||||||| |||  ||||||||        |||||||||||||||||||| |||||    
T  24361523 ccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcatgagataaa--aaaatattacattaactctaatattgtcaact 24361433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 294 - 412
Target Start/End: Original strand, 10069142 - 10069260
Alignment:
Q  294 tgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaa 393  Q
    |||||||||||||||||||||||||||  ||||||| | ||||| ||||||||| | | |||| ||||| |||||||||| |||||||||||||||||||    
T  10069142 tgttcgcggtgcggtttggttcggttttgagcataaaagtcatctaaaccgcgatataaaaaaacatgctgtttggtttgattcggttgatttttaaaaa 10069241  T
Q  394 gtcatccaaaccaaaccaa 412  Q
    ||||| |||||||||||||    
T  10069242 gtcattcaaaccaaaccaa 10069260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 288 - 409
Target Start/End: Original strand, 5932638 - 5932759
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||| |||| ||||||||||||| ||||||||  ||||||| | |||||  |||||||||| |  |||||||||||||||||||||||  |||||||||    
T  5932638 tagggatgtttgcggtgcggtttgattcggttttgagcataaaagtcatctgaaccgcgagataagaaagcatgcggtttggtttggttaagttgatttt 5932737  T
Q  388 taaaaagtcatccaaaccaaac 409  Q
    ||||||||||||||||||||||    
T  5932738 taaaaagtcatccaaaccaaac 5932759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 291 - 491
Target Start/End: Original strand, 1335264 - 1335466
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||||||| ||| ||||||||||||||  ||||||| | |||||||| |  ||||| | |||||||   ||||||||||||||||||||||||||||    
T  1335264 gggtgttcgcgttgcagtttggttcggttttgagcataaaagtcatccaa-ctacgagataaaaaagcacctggtttggtttggttcggttgatttttaa 1335362  T
Q  391 aaagtcatccaaaccaaac-----caatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattg 485  Q
    |||||| ||||||||||||     |||||||| ||||||| |||| |||| ||||||| ||||| || ||||        ||||||||||||||||||||    
T  1335363 aaagtcctccaaaccaaaccaaatcaatgcggcttggattagttcggttggtgcggtttatcgcaagttaaa--aaaatattacattaactctaatattg 1335460  T
Q  486 ccaact 491  Q
    ||||||    
T  1335461 ccaact 1335466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 323 - 412
Target Start/End: Original strand, 43429153 - 43429242
Alignment:
Q  323 agcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 412  Q
    ||||||| | ||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  43429153 agcataaaagtcatccaaaccgcgagataaaaatgcacgcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaaccaa 43429242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 359 - 491
Target Start/End: Complemental strand, 24361357 - 24361227
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaat 458  Q
    ||||||||||||||||||||||| ||||  ||||| ||||||||||||||| |||||||||||||||||||| |||  ||||||| ||| |||||||||     
T  24361357 atgcggtttggtttggttcggttaatttaaaaaaaatcatccaaaccaaactaatgcggtttggattggttcggtttgtgcggtttatcacgagataaa- 24361259  T
Q  459 nnnnnnnttacattaactctaatattgccaact 491  Q
           |||||||||||||||||||| |||||    
T  24361258 -aaaatattacattaactctaatattgtcaact 24361227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 292 - 457
Target Start/End: Original strand, 48675058 - 48675228
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    |||||||||| ||||||||| ||||||||    |||||   ||| ||||||||| ||| | ||||||| | |||||| |||||||||||||||||||||     
T  48675058 ggtgttcgcgatgcggtttgcttcggttttggacataaatttcacccaaaccgcaagataaaaaagcacgtggtttgatttggttcggttgatttttaag 48675157  T
Q  392 aagtcat-----ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    |||||||     |||||||||| |||||||| |||||| ||||| |||  ||||||| |||||||||||||    
T  48675158 aagtcatccaagccaaaccaaatcaatgcggcttggatcggttcggtttgtgcggtttatcgcgagataaa 48675228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 288 - 429
Target Start/End: Complemental strand, 2409106 - 2408960
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||| ||||| |||||||||||||   |||  ||||||| | |||||||||||| |||| | |||| |||||||||||||||| |||  ||||||||    
T  2409106 taggggtattcgcagtgcggtttggtttaattttgagcataaaagtcatccaaaccgtgagataaaaaaccatgcggtttggtttgattcaattgatttt 2409007  T
Q  388 taaaaagtcat-----ccaaaccaaaccaatgcggtttggattggtt 429  Q
    |||||||| ||     | |||||||| ||||||||||||||||||||    
T  2409006 taaaaagttattcaaactaaaccaaatcaatgcggtttggattggtt 2408960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 295 - 457
Target Start/End: Original strand, 11216104 - 11216266
Alignment:
Q  295 gttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaag 394  Q
    ||||| ||||| |||||||||| |||  ||||||| |||||| | ||| | |||| | |||| |||| |||||| |||  || | |||||||||||||||    
T  11216104 gttcgtggtgcagtttggttcgattttgagcataaaaatcattcgaactgtgagataaaaaaacatgtggtttgatttaatttgattgatttttaaaaag 11216203  T
Q  395 tcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    |  ||||||||||| |||||| ||||| ||||||||| |||| || ||| |||||||||||||    
T  11216204 ttgtccaaaccaaatcaatgcagtttgaattggttcaattgacgcagtttatcgcgagataaa 11216266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 290 - 429
Target Start/End: Original strand, 7760049 - 7760188
Alignment:
Q  290 ggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttta 389  Q
    ||||||||||||||| ||||||||||| |||  ||||||| |||||||||||| | |||| | ||||| || | |||||||||     ||||||||||||    
T  7760049 ggggtgttcgcggtgtggtttggttcgattttgagcataaaaatcatccaaactgtgagataaaaaagtatccagtttggttt-----ggttgattttta 7760143  T
Q  390 aaaagtcatc-----caaaccaaaccaatgcggtttggattggtt 429  Q
    ||||||||||     |||| ||||||||||||| |||||||||||    
T  7760144 aaaagtcatctaaatcaaatcaaaccaatgcggcttggattggtt 7760188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 32942219 - 32942115
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||| ||||||||||||||  ||  ||| | |||||| ||| || ||| | |||| |||||||||||||||| ||||||||| |||    
T  32942219 taggggtgttcgcggtgcagtttggttcggttttgaggttaaaagtcatccgaactgcaagataaaaaaacatgcggtttggtttgattcggttgacttt 32942120  T
Q  388 taaaa 392  Q
    |||||    
T  32942119 taaaa 32942115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 360
Target Start/End: Complemental strand, 45898200 - 45898128
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcat 360  Q
    |||||||||||||||||||||||||||||||||   |||||| | ||||||||||||||||| | ||||||||    
T  45898200 taggggtgttcgcggtgcggtttggttcggttttgtgcataaaagtcatccaaaccgcgagataaaaaagcat 45898128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 392
Target Start/End: Complemental strand, 8568689 - 8568590
Alignment:
Q  293 gtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaa 392  Q
    ||||||||||||||||||||||||||||  ||  ||| | |||||| |||||| ||| | | ||| ||||||||||||| ||||||||||| ||||||||    
T  8568689 gtgttcgcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaagataaataagtatgcggtttggttcggttcggttgacttttaaaa 8568590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 288 - 390
Target Start/End: Complemental strand, 7206018 - 7205916
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||| ||| |||||||||||||||  | ||||  | ||||||||||||||||| | |||| ||||||||||| |||  ||| |||||||||    
T  7206018 taggggtgttcgcagtgtggtttggttcggttttgaacatagaagtcatccaaaccgcgagataaaaaaacatgcggtttgtttttattctgttgatttt 7205919  T
Q  388 taa 390  Q
    |||    
T  7205918 taa 7205916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 390 - 489
Target Start/End: Original strand, 22366500 - 22366597
Alignment:
Q  390 aaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaa 489  Q
    |||||||||||||||||||||||||||| |||||||||||  |||  ||||||| ||||| |||||||        ||||||||||||||||||||||||    
T  22366500 aaaagtcatccaaaccaaaccaatgcggcttggattggtttggtttgtgcggtttatcgcaagataaa--aaaaaattacattaactctaatattgccaa 22366597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 335 - 392
Target Start/End: Complemental strand, 8118373 - 8118316
Alignment:
Q  335 atccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaa 392  Q
    |||| |||||| ||| | ||||||||| ||||||||||||||||||||||||| ||||    
T  8118373 atccgaaccgcaagataaaaaagcatgtggtttggtttggttcggttgattttaaaaa 8118316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 29628050 - 29628082
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggttt 320  Q
    |||||||||||||||||||||||||||||||||    
T  29628050 taggggtgttcgcggtgcggtttggttcggttt 29628082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 288 - 427
Target Start/End: Complemental strand, 525006 - 524867
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||| |||||| |||||||||  ||| |||  ||| | | |||  |||||| ||| | ||||  ||||||||||||||| |||| |||| |||    
T  525006 taggggtgttcacggtgcagtttggttcatttttaaggctaaaagttatctgaaccgcaagataaaaaaatatgcggtttggtttgattcgattgacttt 524907  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    |||||    ||||||||||||||||| || ||||| ||||    
T  524906 taaaataaaatccaaaccaaaccaattcgatttgggttgg 524867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 392
Target Start/End: Complemental strand, 26215251 - 26215160
Alignment:
Q  301 ggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaa 392  Q
    |||||||||||||| |||||  ||  ||| | ||||||||||||| ||| |  ||||||| ||| || ||||||||||||||| ||||||||    
T  26215251 ggtgcggtttggtttggttttgaggttaaaagtcatccaaaccgcaagataataaagcatacgggtttgtttggttcggttgacttttaaaa 26215160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 392
Target Start/End: Complemental strand, 2308180 - 2308151
Alignment:
Q  363 ggtttggtttggttcggttgatttttaaaa 392  Q
    ||||||||||||||||||||||||||||||    
T  2308180 ggtttggtttggttcggttgatttttaaaa 2308151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 392
Target Start/End: Original strand, 23729373 - 23729434
Alignment:
Q  331 aatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaa 392  Q
    |||||||| |||||| ||| | ||||||||||||||||||||   |||||||| ||||||||    
T  23729373 aatcatccgaaccgcaagataaaaaagcatgcggtttggtttaactcggttgacttttaaaa 23729434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 31287848 - 31287815
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaa 392  Q
    ||||||||||||||||||||||||| ||||||||    
T  31287848 atgcggtttggtttggttcggttgacttttaaaa 31287815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 320
Target Start/End: Original strand, 40848796 - 40848825
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggttt 320  Q
    ||||||||||||||||||||||||||||||    
T  40848796 gggtgttcgcggtgcggtttggttcggttt 40848825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 10338835 - 10338791
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||| |||| ||||||||||||| || ||||||||||||    
T  10338835 ccaaaccaaatcaattcggtttggattggatcggttgatgcggtt 10338791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 20334597 - 20334665
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    ||||||||||||||||||||||||| ||| ||||    |||  |||||||||| ||| |||||||||||    
T  20334597 atgcggtttggtttggttcggttgactttaaaaataaaatctgaaccaaaccattgctgtttggattgg 20334665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 29211788 - 29211756
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggttt 320  Q
    ||||||||||||||||||| |||||||||||||    
T  29211788 taggggtgttcgcggtgcgatttggttcggttt 29211756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 287 - 601
Target Start/End: Original strand, 9811332 - 9811646
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  9811332 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgattt 9811431  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  9811432 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaatttacattaactctaatattgc 9811531  T
Q  487 caactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattac 586  Q
    |||||||||||||||||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9811532 caactagtaccaaacaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattac 9811631  T
Q  587 agtaccaaaataata 601  Q
    |||||||||||||||    
T  9811632 agtaccaaaataata 9811646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 36413780 - 36413457
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36413780 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 36413681  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  36413680 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactc 36413581  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    |||||||||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  36413580 taatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 36413481  T
Q  578 taacattacagtaccaaaataata 601  Q
    ||||||||||||||||||||||||    
T  36413480 taacattacagtaccaaaataata 36413457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 16578578 - 16578901
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  16578578 taggggtgttcgcgatgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcgattgatttt 16578677  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  16578678 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactc 16578777  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    |||||||||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  16578778 taatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 16578877  T
Q  578 taacattacagtaccaaaataata 601  Q
    ||||||||||||||||||||||||    
T  16578878 taacattacagtaccaaaataata 16578901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 44979909 - 44979709
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  44979909 taggggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttt 44979810  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||||||||||||||||||||||||||||||||||||||||||| | |  ||||||| |||||||||||||        ||||||||||||||||||||||    
T  44979809 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcggcttgtgcggtttatcgcgagataaa---aaatattacattaactctaatattgcc 44979713  T
Q  488 aact 491  Q
    ||||    
T  44979712 aact 44979709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 291 - 491
Target Start/End: Complemental strand, 25298388 - 25298190
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||||||||||| ||||||||||||||  ||||||| | ||||| |||| |||||| | |||| ||| ||||| |||||||||||||||||||||||    
T  25298388 gggtgttcgcggtgcagtttggttcggttttgagcataaaagtcatcgaaactgcgagataaaaaaacattcggttcggtttggttcggttgatttttaa 25298289  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaac 490  Q
    ||||||||||||||||||| ||| |||||||||||||||| |||  ||||||| |||||||||| ||        |||||||||||||||||||||||||    
T  25298288 aaagtcatccaaaccaaactaatacggtttggattggttcggtttgtgcggtttatcgcgagatgaa--aaaatattacattaactctaatattgccaac 25298191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 18356846 - 18357048
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||| ||||||||||||| |||||||||||||  ||||||| | ||||| |||| |||||| | | ||||||||||| ||| |||||| | || |||||    
T  18356846 tagggatgttcgcggtgcgatttggttcggttttgagcataaaagtcatctaaactgcgagataaagaagcatgcggtatggattggtttgattaatttt 18356945  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||        ||||||||||||||||||||||    
T  18356946 taaaaagtcattcaaaccaaaccaatgcggcttggattggttctgttgatgcggtttatcgcgagataaa-aaaaatattacattaactctaatattgcc 18357044  T
Q  488 aact 491  Q
    ||||    
T  18357045 aact 18357048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 489
Target Start/End: Complemental strand, 42785769 - 42785565
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||| |||  ||||||| | ||||||||| || |||| | ||||| |||||||||||||||||||| ||||||||    
T  42785769 taggggtgttcgcggtgcggtttggttcgattttgagcataaaagtcatccaaatcgtgagataaaaaaggatgcggtttggtttggttcgcttgatttt 42785670  T
Q  388 taaaaagtcatccaaaccaaa-----ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaata 482  Q
    |||||| |||| |||||||||     ||||||||||||||||||||||  ||||||||||| |||||||||||||        |||||||||||||||||    
T  42785669 taaaaactcattcaaaccaaaccaaaccaatgcggtttggattggttcgattgatgcggtttatcgcgagataaa--aaaatattacattaactctaata 42785572  T
Q  483 ttgccaa 489  Q
    |||||||    
T  42785571 ttgccaa 42785565  T

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Target: chr2; HSP #8
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 311 - 457
Target Start/End: Original strand, 11375867 - 11376013
Alignment:
Q  311 ggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaacc 410  Q
    |||||||||| |||||||| | ||||||||||||||||| | |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11375867 ggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaaacatgcagtttggtttggttcggttgatttttaaaaagtcatccaaaccaaacc 11375966  T
Q  411 aatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    ||||||| |||||||| |||  ||  ||||||| ||||| |||||||    
T  11375967 aatgcggattggattgattcgttttgtgcggtttatcgcaagataaa 11376013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 287 - 457
Target Start/End: Complemental strand, 17916992 - 17916827
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||||||||||| |||||||| ||||  ||||||| | | ||||||||   |||| | |||| |||||||||||||||||||||||||||||    
T  17916992 ttaggggtgttcgcggtgcgatttggttcagttttgagcataaaagttatccaaactttgagataaaaaaacatgcggtttggtttggttcggttgattt 17916893  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    |||||||||||||||||     ||||||||| |||||||||||| |||  ||| ||| |||||||||||||    
T  17916892 ttaaaaagtcatccaaa-----ccaatgcggcttggattggttcggtttgtgcagtttatcgcgagataaa 17916827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 291 - 412
Target Start/End: Original strand, 44035251 - 44035373
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgaga-gagaaaagcatgcggtttggtttggttcggttgattttta 389  Q
    |||||||||| | |||||||||||||||||  ||||||| | ||||||||||||| | |  | |||||||||||||||||||||||||||||||||||||    
T  44035251 gggtgttcgcagggcggtttggttcggttttgagcataaaagtcatccaaaccgcaaaataaaaaaagcatgcggtttggtttggttcggttgattttta 44035350  T
Q  390 aaaagtcatccaaaccaaaccaa 412  Q
    |||||||||||||||||||||||    
T  44035351 aaaagtcatccaaaccaaaccaa 44035373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 287 - 412
Target Start/End: Complemental strand, 19937265 - 19937141
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||||||||||||||||||| || ||  ||||||| | ||||||||||||||||| | |||| |||| |||||||||||||||| |||||||    
T  19937265 ttaggggtgttcgcggtgcggtttggttaggatttgagcataaaagtcatccaaaccgcgagataaaaaaacatg-ggtttggtttggttcgattgattt 19937167  T
Q  387 ttaaaaagtcatccaaaccaaaccaa 412  Q
    ||||||||||||||||| ||||||||    
T  19937166 ttaaaaagtcatccaaatcaaaccaa 19937141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 287 - 443
Target Start/End: Original strand, 1330951 - 1331107
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| ||| ||||||||| |||||||| |||   || |||||||| |||| | ||  | |||||||||| | |||||||||||||||||| ||    
T  1330951 ttaggggtgtttgcgatgcggtttgattcggttttaagacgaaaaatcatccgaaccacaaggtaaaaaagcatgcagattggtttggttcggttgactt 1331050  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    ||||||    |||||||||||||||||| ||||||| |||| ||||||| |||||||    
T  1331051 ttaaaataaaatccaaaccaaaccaatgtggtttgggttggatcagttggtgcggtt 1331107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 287 - 443
Target Start/End: Original strand, 41461023 - 41461184
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||| ||||||||||||||  ||  ||| | ||| || |||||| ||  | ||||| ||||||||||||||||||||||||| ||    
T  41461023 ttaggggtgttcgcggtgcagtttggttcggtttttagactaaaagtcaaccgaaccgcaagctaaaaaagtatgcggtttggtttggttcggttgactt 41461122  T
Q  387 tta----aaaagtc-atccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||    |||| || | ||||||||||||||||||||||||||||  || |||| |||||||    
T  41461123 ttaaaataaaattcgaaccaaaccaaaccaatgcggtttggattgaatcggttggtgcggtt 41461184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 443
Target Start/End: Complemental strand, 15320719 - 15320564
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||| |||  ||  ||| | |||||||||||| ||   | |||||||||| ||| |||||||||| |||||||||    
T  15320719 taggggtgttcgcggtgcggtttggttcgattttgaggctaaaagtcatccaaaccgtgaagtaaaaaagcatgcagttaggtttggttcagttgatttt 15320620  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||    ||||||||||||| |||| ||||||  |||| |  ||||||||||||    
T  15320619 taaaataaaatccaaaccaaactaatgtggtttgttttggattggttgatgcggtt 15320564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 289 - 489
Target Start/End: Original strand, 34910254 - 34910455
Alignment:
Q  289 aggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagca----tgcggtttggtttggttcggttgat 384  Q
    ||||||||| ||||||| ||||||||| ||||  ||||||| |||||| |||||||||||| | ||||  |    ||||||||||||| |||     |||    
T  34910254 aggggtgtttgcggtgcagtttggttcagttttgagcataaaaatcattcaaaccgcgagataaaaaaaaacatatgcggtttggttttgtt-----gat 34910348  T
Q  385 ttttaaaaagtcatc---caaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaat 481  Q
    |||||||||||||||   |||||||||||||||||| ||||||| |||| |||  | ||||| || ||||||||||        ||||||||||||||||    
T  34910349 ttttaaaaagtcatcattcaaaccaaaccaatgcggcttggattagttcggtttgtacggtttattgcgagataaa-aaaaacattacattaactctaat 34910447  T
Q  482 attgccaa 489  Q
    ||||||||    
T  34910448 attgccaa 34910455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 286 - 392
Target Start/End: Original strand, 17762682 - 17762788
Alignment:
Q  286 tttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatt 385  Q
    ||||||||||||||||||| ||||| ||| |||||  ||  ||| | ||| || |||||||||| | |||| |||||||||||||||||||||||||| |    
T  17762682 tttaggggtgttcgcggtgtggttttgtttggttttgaggctaaaagtcaaccgaaccgcgagataaaaaaacatgcggtttggtttggttcggttgact 17762781  T
Q  386 tttaaaa 392  Q
    |||||||    
T  17762782 tttaaaa 17762788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 523 - 584
Target Start/End: Complemental strand, 42785269 - 42785208
Alignment:
Q  523 gaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 584  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| |||| |||||||||||    
T  42785269 gaacttgaagttccaaaataacattacaataccaataaaagttatctatccaaaataacatt 42785208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 287 - 419
Target Start/End: Complemental strand, 12041730 - 12041598
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| |||||| |||||||||||||||  ||  ||| | |||||  |||||  ||| | |||| ||||||||||| |||||||||||||| ||    
T  12041730 ttaggggtgtttgcggtgtggtttggttcggttttgaggctaaaagtcatctgaaccgtaagataaaaaaacatgcggtttgatttggttcggttgactt 12041631  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtt 419  Q
    ||||||    |||| ||||||||||||||||||    
T  12041630 ttaaaataaaatccgaaccaaaccaatgcggtt 12041598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 27301624 - 27301520
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||| ||| ||||||||||||||  ||  ||| |  |||||  ||||| ||| | ||||||||||||||||||||| ||||||||| |||    
T  27301624 taggggtgttcgcgctgcagtttggttcggttttgagattaaaagccatccggaccgcaagataaaaaagcatgcggtttggtttgattcggttgacttt 27301525  T
Q  388 taaaa 392  Q
    |||||    
T  27301524 taaaa 27301520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 353 - 444
Target Start/End: Original strand, 44085497 - 44085588
Alignment:
Q  353 aaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtta 444  Q
    ||||||||||||||||||||||||||||||| ||| ||||    |||  || |||||||||||||||||| |||| || |||| ||||||||    
T  44085497 aaaagcatgcggtttggtttggttcggttgactttaaaaataaaatctgaatcaaaccaatgcggtttgggttggatcggttggtgcggtta 44085588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 5862772 - 5862667
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||| || | |||  ||  ||| | ||||| ||| ||| | | | ||||| ||||||||||||||||||||||||| ||    
T  5862772 ttaggggtgttcgcggtgcggtttgatttgattttgagggtaaaagtcatctaaatcgcaaaataaaaaagtatgcggtttggtttggttcggttgactt 5862673  T
Q  387 ttaaaa 392  Q
    ||||||    
T  5862672 ttaaaa 5862667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 412
Target Start/End: Original strand, 28790450 - 28790572
Alignment:
Q  290 ggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttta 389  Q
    |||||||||| ||||||||||||||| ||||  |   ||| | |||||  |||||| ||| | |||||||||||||||| || | ||||||||| |||||    
T  28790450 ggggtgttcgtggtgcggtttggttcagttttgatgttaaaagtcatctgaaccgcaagataaaaaagcatgcggtttgattagattcggttgactttta 28790549  T
Q  390 aaaagtcatccaaaccaaaccaa 412  Q
    |||    ||||||||||||||||    
T  28790550 aaataaaatccaaaccaaaccaa 28790572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 365 - 403
Target Start/End: Complemental strand, 44986120 - 44986082
Alignment:
Q  365 tttggtttggttcggttgatttttaaaaagtcatccaaa 403  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  44986120 tttggtttggttcgattgacttttaaaaagtcatccaaa 44986082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 376
Target Start/End: Original strand, 12884473 - 12884561
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggtt 376  Q
    ||||| |||| |||||||||||||||||| ||| |||  ||| | |||||||||| ||  |  | ||||| ||||||||||||||||||    
T  12884473 tagggatgtttgcggtgcggtttggttcgattttaaggttaaaagtcatccaaactgcatggtaaaaaagtatgcggtttggtttggtt 12884561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 42350825 - 42350789
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttg 435  Q
    ||||||||||||||||| ||||||||| |||||||||    
T  42350825 ccaaaccaaaccaatgcagtttggattagttcagttg 42350789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 287 - 601
Target Start/End: Original strand, 12270498 - 12270812
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  12270498 ttaggggtgttcgcggtgcggtttggttcggtttcaaacataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 12270597  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  12270598 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgc 12270697  T
Q  487 caactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattac 586  Q
    ||||||||||||| |||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12270698 caactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattac 12270797  T
Q  587 agtaccaaaataata 601  Q
    |||||||||||||||    
T  12270798 agtaccaaaataata 12270812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 288 - 458
Target Start/End: Complemental strand, 5874292 - 5874112
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5874292 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 5874193  T
Q  388 taaaaagtcatccaaaccaaa----------ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaat 458  Q
    |||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5874192 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaat 5874112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 10590793 - 10590997
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||| ||||||||||||||||||||||||  ||||||| | |||||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  10590793 taggggtggtcgcggtgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcggttgatttt 10590892  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagat-aaatnnnnnnnttacattaactctaatattgc 486  Q
    ||||||||||||| |||||||||||||||| |||||||||||| |||  ||||||| ||| |||||| |||        |||||||||||||||||||||    
T  10590893 taaaaagtcatcccaaccaaaccaatgcggcttggattggttcggtttgtgcggtttatcacgagataaaaaaaaaatattacattaactctaatattgc 10590992  T
Q  487 caact 491  Q
    |||||    
T  10590993 caact 10590997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 35040350 - 35040155
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||| | |||||||||||||||||||||||| ||||||||||    
T  35040350 taggggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtttggttgatttt 35040251  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||||||||||||||||     |||||||||||||||||||||| |||  ||||||| |||||||||||||        ||||||| ||||||||||||||    
T  35040250 taaaaagtcatccaaa-----ccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaa---aaatattacattgactctaatattgcc 35040159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 287 - 491
Target Start/End: Complemental strand, 5288045 - 5287842
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||| |||||||||||||||||||||||||||||  |||||   | |||||||||| |||||| | | || ||||| |||||||||||||||||||||||    
T  5288045 ttagaggtgttcgcggtgcggtttggttcggttttgagcatttaagtcatccaaactgcgagataaataaacatgcagtttggtttggttcggttgattt 5287946  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    |||||||||||||||||| |||||||| ||| |||||||||||| |||  ||||||| ||||| |||||||        |||||||||||||||||||||    
T  5287945 ttaaaaagtcatccaaacgaaaccaatacggcttggattggttcggttagtgcggtttatcgcaagataaa-aaaaaaattacattaactctaatattgc 5287847  T
Q  487 caact 491  Q
    |||||    
T  5287846 caact 5287842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 287 - 491
Target Start/End: Original strand, 15859667 - 15859877
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||| ||||||||||||||  ||||||| | || ||||||||||||||   ||||||||||||||||||||| ||||||||||||    
T  15859667 ttaggggtgttcgcggtgccgtttggttcggttttgagcataaaagtcttccaaaccgcgagattaaaaagcatgcggtttggtttgattcggttgattt 15859766  T
Q  387 ttaaaaagtcatccaa--------accaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactct 478  Q
    ||||| ||||||||||        |||||||||||||||||||||||||||| |||  ||||||| |||||||||| ||        |||||||||||||    
T  15859767 ttaaatagtcatccaaaccaaaccaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagatgaa--aaaatattacattaactct 15859864  T
Q  479 aatattgccaact 491  Q
    |||||||||||||    
T  15859865 aatattgccaact 15859877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 287 - 491
Target Start/End: Complemental strand, 10494522 - 10494309
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| |||||||||||||||| |||||  ||||||| | ||||||||||||||||| | ||||||||| |||||| |||||||||||||||||    
T  10494522 ttaggggtgtttgcggtgcggtttggtttggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatggggtttgatttggttcggttgattt 10494423  T
Q  387 ttaaaaagtcatcc----------aaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaact 476  Q
    ||||||||||||||          |||| |||||||||||| || ||||||||| |||||||||||| |||||||||| |||       |||||||||||    
T  10494422 ttaaaaagtcatccaaactaaaccaaactaaaccaatgcggcttagattggttcggttgatgcggtttatcgcgagat-aattttttttttacattaact 10494324  T
Q  477 ctaatattgccaact 491  Q
     ||||||||||||||    
T  10494323 ataatattgccaact 10494309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 286 - 491
Target Start/End: Complemental strand, 10391164 - 10390960
Alignment:
Q  286 tttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatt 385  Q
    ||||||||||||||||||| |||||||||||||||  ||||||| | |||| | |||||||||| | |||||||||| ||||||||||||||  ||||||    
T  10391164 tttaggggtgttcgcggtgtggtttggttcggttttgagcataaaagtcattcgaaccgcgagataaaaaagcatgctgtttggtttggttcacttgatt 10391065  T
Q  386 t-ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatatt 484  Q
    | | |||||||||||||||||||||||| | || |||||||||||| | |  ||||||| ||| |||||||||        |||||||||||||||||||    
T  10391064 tctaaaaaagtcatccaaaccaaaccaacgtggcttggattggttcggcttgtgcggtttatcacgagataaa--aaaatattacattaactctaatatt 10390967  T
Q  485 gccaact 491  Q
    |||||||    
T  10390966 gccaact 10390960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 288 - 412
Target Start/End: Complemental strand, 13811009 - 13810885
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||| ||||||||| |||||  |||| || | ||||||||||||||||| | |||||||| |||||||||||||||| |||||||||    
T  13811009 taggggtgttcgcggtgaggtttggtttggttttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatacggtttggtttggttcagttgatttt 13810910  T
Q  388 taaaaagtcatccaaaccaaaccaa 412  Q
    |||||||||||||||||||||||||    
T  13810909 taaaaagtcatccaaaccaaaccaa 13810885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 288 - 455
Target Start/End: Original strand, 25136714 - 25136886
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||| |||||||||||||||||||||  ||||||  | | |||||||| | || | | |||||||||||||| |||||||||||||||  |||    
T  25136714 taggggtgttcacggtgcggtttggttcggttttgagcatacaagtgatccaaacagtgaaataaaaaagcatgcggttcggtttggttcggttggattt 25136813  T
Q  388 taaaaagtcatccaa-----accaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagata 455  Q
    |||||||||||||||     ||||||||||||| |||| ||||||||| |||  ||||||| ||||| |||||    
T  25136814 taaaaagtcatccaaaccaaaccaaaccaatgcagtttagattggttcggtttgtgcggtttatcgcaagata 25136886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 501 - 591
Target Start/End: Complemental strand, 5867023 - 5866933
Alignment:
Q  501 caattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattacagtac 591  Q
    |||||||||||||||       ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5867023 caattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaatacaaataaaagttatttatctaaaataacattacagtac 5866933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 287 - 412
Target Start/End: Original strand, 33550261 - 33550386
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||   | ||||||||| ||||||||  ||||||| | |||||||||||| | || | |||| ||||  |||| ||||||||||||||||||    
T  33550261 ttaggggtgtttatgatgcggtttgattcggttttgagcataaaagtcatccaaaccgagggataaaaaaacatgatgtttagtttggttcggttgattt 33550360  T
Q  387 ttaaaaagtcatccaaaccaaaccaa 412  Q
    ||||||||||||||||||||||||||    
T  33550361 ttaaaaagtcatccaaaccaaaccaa 33550386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 344 - 412
Target Start/End: Complemental strand, 13802066 - 13801998
Alignment:
Q  344 gcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 412  Q
    |||||| | |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  13802066 gcgagataaaaaagcatacggtttggtttggttcagttgatttttaaaaagtcatccaaaccaaaccaa 13801998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 435
Target Start/End: Original strand, 6266846 - 6266993
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||| ||||||||||||||||||||| ||||||  ||  ||||| |||||| |||||  | | | |||| |||||||||||||||||| ||||||| |||    
T  6266846 taggagtgttcgcggtgcggtttggtacggttttgaggttaatagtcatccgaaccgtaaaataaaaaaacatgcggtttggtttggtacggttgacttt 6266945  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttg 435  Q
    ||||| |  | ||||||||||| |||| | |||||||||||| |||||    
T  6266946 taaaatgaaaaccaaaccaaacaaatgtgttttggattggtttagttg 6266993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 303 - 491
Target Start/End: Original strand, 33550277 - 33550472
Alignment:
Q  303 tgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaa 402  Q
    ||||||||| ||||||||  ||||||| | |||||||||||| | || | |||| ||||  |||| ||||||||||||||||||||||||||||||||||    
T  33550277 tgcggtttgattcggttttgagcataaaagtcatccaaaccgagggataaaaaaacatgatgtttagtttggttcggttgatttttaaaaagtcatccaa 33550376  T
Q  403 ----------accaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaact 491  Q
              |||||||||||||||||||||||| |||  ||  ||||||| |||||| ||||||        ||||||||||||||| ||||||||||    
T  33550377 accaaaccaaaccaaaccaatgcggtttggattgattcgatttgtgcggtttatcgcgggataaa---aaatattacattaactctaaaattgccaact 33550472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 288 - 435
Target Start/End: Original strand, 9686000 - 9686147
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||| ||| |||||||||| |||  ||  | | | |||||  |||||| ||| | | ||| ||||||||||||||||||||||| | |||    
T  9686000 taggggtgttcgcgatgcagtttggttcgattttgaggctcaaagtcatctgaaccgcaagataaataagtatgcggtttggtttggttcggttaacttt 9686099  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttg 435  Q
    |||||    |||| |||||||||||||||||||||||||| |||||||    
T  9686100 taaaataaaatccgaaccaaaccaatgcggtttggattggatcagttg 9686147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 289 - 427
Target Start/End: Complemental strand, 24645091 - 24644954
Alignment:
Q  289 aggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttt 388  Q
    |||||||||||  ||||||||||||||| |||  ||  ||| | |||||| |||||| ||| | | ||| ||||||||||||||| |||| |||| ||||    
T  24645091 aggggtgttcgttgtgcggtttggttcgattttgaggttaaaagtcatccgaaccgcaagataaataagtatgcggtttggtttgattcg-ttgactttt 24644993  T
Q  389 aaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    ||||    ||||||||||||||||||| |||||||||||    
T  24644992 aaaataaaatccaaaccaaaccaatgcagtttggattgg 24644954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 287 - 425
Target Start/End: Original strand, 29048068 - 29048206
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||| ||||||||||||||||||||||||||| |||  ||| | |||||||||||   ||  | ||| |  |||| ||||||||||||||||||| ||    
T  29048068 ttagggatgttcgcggtgcggtttggttcggttttaaggttaaaagtcatccaaaccataaggtaaaaaggtgtgcgatttggtttggttcggttgactt 29048167  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggatt 425  Q
    ||||||    |||| ||| ||||||||||| ||||||||    
T  29048168 ttaaaataaaatccgaactaaaccaatgcgatttggatt 29048206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 892477 - 892377
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    ||||||||||||||||||||||||  ||| |||  ||| | |||||| |||||| | | | |||| |||||||||||||||||||||||| | |||||||    
T  892477 ggtgttcgcggtgcggtttggttcaattttaaggctaaaagtcatccgaaccgcaaaataaaaaaacatgcggtttggtttggttcggttaacttttaaa 892378  T
Q  392 a 392  Q
    |    
T  892377 a 892377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 391
Target Start/End: Original strand, 30752525 - 30752576
Alignment:
Q  340 aaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    |||||| ||| | ||||||||||||||||||||||||||||||| |||||||    
T  30752525 aaccgcaagataaaaaagcatgcggtttggtttggttcggttgacttttaaa 30752576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 335 - 427
Target Start/End: Complemental strand, 14940665 - 14940573
Alignment:
Q  335 atccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    |||| |||||| ||| | |||| ||||| |||||||||||||||||||| |||| |||    |||| ||||||||||| ||||||||| ||||    
T  14940665 atccgaaccgcaagataaaaaaacatgcagtttggtttggttcggttgactttttaaataaaatccgaaccaaaccaacgcggtttgggttgg 14940573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 286 - 320
Target Start/End: Original strand, 20500505 - 20500539
Alignment:
Q  286 tttaggggtgttcgcggtgcggtttggttcggttt 320  Q
    ||||||||||||||||||||||||||||| |||||    
T  20500505 tttaggggtgttcgcggtgcggtttggtttggttt 20500539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 392
Target Start/End: Complemental strand, 19135181 - 19135148
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaa 392  Q
    ||||||||||||||||||||||||| ||||||||    
T  19135181 atgcggtttggtttggttcggttgacttttaaaa 19135148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 392
Target Start/End: Original strand, 22413851 - 22413884
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaa 392  Q
    ||||||||||||||||||||||||| ||||||||    
T  22413851 atgcggtttggtttggttcggttgacttttaaaa 22413884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 8135378 - 8135410
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggttt 320  Q
    ||||||||||||||||||| |||||||||||||    
T  8135378 taggggtgttcgcggtgcgttttggttcggttt 8135410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 335 - 443
Target Start/End: Original strand, 9909057 - 9909165
Alignment:
Q  335 atccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagtt 434  Q
    |||| |||||| ||| ||||||||||| | | || |||||||||||||  |||||||| |  |  | |||||||||||||||| ||   |||||||||||    
T  9909057 atccgaaccgcaagatagaaaagcatgtgatatgttttggttcggttggcttttaaaatgaaagtcgaaccaaaccaatgcggcttatgttggttcagtt 9909156  T
Q  435 gatgcggtt 443  Q
    | |||||||    
T  9909157 gttgcggtt 9909165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 13532422 - 13532390
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggttt 320  Q
    |||||||||| ||||||||||||||||||||||    
T  13532422 taggggtgtttgcggtgcggtttggttcggttt 13532390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 28610676 - 28610712
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttg 435  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  28610676 ccaaaccaaactaatgcggtttggattggttcggttg 28610712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 287 - 601
Target Start/End: Complemental strand, 6024 - 5710
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  6024 ttaggggtgttcgcggtgcggtttggttcgatttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 5925  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  5924 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgc 5825  T
Q  487 caactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattac 586  Q
     |||||||||||| |||||||||||||||       ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  5824 gaactagtaccaatcaattttaattattcaaaaaaagaacttgaagttccaaaataacattacaataccaataaaagttatttatctaaaataacattac 5725  T
Q  587 agtaccaaaataata 601  Q
    |||||||||||||||    
T  5724 agtaccaaaataata 5710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 27886556 - 27886243
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27886556 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 27886457  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  27886456 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcc 27886357  T
Q  488 aactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 587  Q
    ||| |||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  27886356 aaccagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaaattatttatctaaaataacattaca 27886257  T
Q  588 gtaccaaaataata 601  Q
     |||||||||||||    
T  27886256 ttaccaaaataata 27886243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 667754 - 667441
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  667754 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaaacatacggtttggtttggttcggttgatttt 667655  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||       ||||||||||||||||||||||    
T  667654 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcagtaaatcgcgagataaataaaaaaattacattaactctaatattgcc 667555  T
Q  488 aactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 587  Q
    |||||||||||| |||||||||||||||        |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  667554 aactagtaccaagcaattttaattattcaaaaaaaaaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 667455  T
Q  588 gtaccaaaataata 601  Q
    ||||||||||||||    
T  667454 gtaccaaaataata 667441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 288 - 609
Target Start/End: Original strand, 30001954 - 30002274
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  30001954 tagggttgttcgcggtgcggtttggttcggtttcaagcataataataatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgttttt 30002053  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       ||||||||||| ||||||||||    
T  30002054 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcacgagataaataaaaaaattacattaact-taatattgcc 30002152  T
Q  488 aactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 587  Q
    |||||||||||| |||||||||||||||       ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30002153 aactagtaccaagcaattttaattattcaaaaaaagaatttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 30002252  T
Q  588 gtaccaaaataatagctggata 609  Q
    | ||||||||||||||||||||    
T  30002253 gaaccaaaataatagctggata 30002274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 15068403 - 15068726
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  15068403 taggggtgttcgcggtgcggtttggttcggttttaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttt 15068502  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  15068503 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactc 15068602  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    |||||||||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15068603 taatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 15068702  T
Q  578 taacattacagtaccaaaataata 601  Q
    ||||||||||||||||||||||||    
T  15068703 taacattacagtaccaaaataata 15068726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 11917348 - 11917671
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  11917348 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 11917447  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       ||||||| ||||    
T  11917448 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacatttactc 11917547  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    |||||||||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  11917548 taatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 11917647  T
Q  578 taacattacagtaccaaaataata 601  Q
    ||| |||||| |||||||||||||    
T  11917648 taaaattacactaccaaaataata 11917671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 287 - 609
Target Start/End: Original strand, 701161 - 701493
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||||||||||||||||||||    
T  701161 ttaggggtgtttgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgtggtttggtttggttcggttgattt 701260  T
Q  387 tt-aaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaac 475  Q
    || ||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||    
T  701261 tttaaaaagtcatccaaaccaaaccaaaccaaatcaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaac 701360  T
Q  476 tctaatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaa 575  Q
    | |||||||||||||||||||||| |||||||||||||||       ||||||| ||||||||||||||||| |||||||||||||||||||||||||||    
T  701361 t-taatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattgcaataccaataaaagttatttatctaa 701459  T
Q  576 aataacattacagtaccaaaataatagctggata 609  Q
    ||||||||||||||||||||||||||||||||||    
T  701460 aataacattacagtaccaaaataatagctggata 701493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 288 - 609
Target Start/End: Original strand, 8408933 - 8409262
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  8408933 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagtatgcggtttggtttggttcggttgatttt 8409032  T
Q  388 taaaaagtc----------atccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||          | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||     
T  8409033 taaaaagtcacccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaact- 8409131  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    ||||||||||||| |||||||| ||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8409132 taatattgccaaccagtaccaatcaattttaattatt-aaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 8409230  T
Q  578 taacattacagtaccaaaataatagctggata 609  Q
    |||||||| |||||||||||||||||||||||    
T  8409231 taacattaaagtaccaaaataatagctggata 8409262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 42544601 - 42544802
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||| ||||||||||| |||||| ||||||||  |||| || | ||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  42544601 tagggttgttcgcggtgtggtttgcttcggttttgagcaaaaaagtcatctaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttt 42544700  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||| ||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||        ||||||||||||||||||||||    
T  42544701 taagaagtcatccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaa--aaaatattacattaactctaatattgcc 42544798  T
Q  488 aact 491  Q
    ||||    
T  42544799 aact 42544802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 289 - 491
Target Start/End: Complemental strand, 30265930 - 30265728
Alignment:
Q  289 aggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttt 388  Q
    |||||||||||||||||||||||||| |||||  ||||||| ||||||| ||||||| ||| | |||| ||||| |||||||||||||||||||||||||    
T  30265930 aggggtgttcgcggtgcggtttggtttggttttgagcataaaaatcatctaaaccgcaagataaaaaaacatgcagtttggtttggttcggttgattttt 30265831  T
Q  389 aaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcca 488  Q
    ||||||||||| ||||||||||||||||| ||| ||| |||| |||  ||||||| |||||||||||||        |||||||||||||||||||||||    
T  30265830 aaaaagtcatcaaaaccaaaccaatgcggcttgaattagttcggtttgtgcggttcatcgcgagataaaaaaaaaaattacattaactctaatattgcca 30265731  T
Q  489 act 491  Q
    |||    
T  30265730 act 30265728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 292 - 491
Target Start/End: Complemental strand, 333413 - 333217
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    |||||| |||||||||||||||||| |||  ||||||| | ||||||||||||||||| |||||||||||||  ||||||||||||| ||||||||||||    
T  333413 ggtgtttgcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagatagaaaagcatgcgaattggtttggttcgattgatttttaaa 333314  T
Q  392 aagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaact 491  Q
    |||||||||||||||||||||||| | ||| |||||||  |||  ||||||| |||||||||||||        |||||||||||||||||||| |||||    
T  333313 aagtcatccaaaccaaaccaatgcagcttgaattggtttggtttgtgcggtttatcgcgagataaa---aaatattacattaactctaatattgtcaact 333217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 292 - 491
Target Start/End: Complemental strand, 2227020 - 2226817
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    ||||||||||| | |||||||||||||||  ||||||| || |||||||||||||||| | ||||| | | |||||||||||||||||||||||||||||    
T  2227020 ggtgttcgcggagtggtttggttcggttttgagcataaaaaacatccaaaccgcgagataaaaaagaacgtggtttggtttggttcggttgatttttaaa 2226921  T
Q  392 aagtcatccaaaccaaacc-----aatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    || ||||||||||||||||     |||||||||||||||||||| |||  ||||||| |||||||||||||        |||||||||||||||||||||    
T  2226920 aactcatccaaaccaaaccaatctaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaa-aaaaatattacattaactctaatattgc 2226822  T
Q  487 caact 491  Q
    |||||    
T  2226821 caact 2226817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 38433640 - 38433847
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||| |||||| |||| |||||||||  ||||||| | |||| |||||||||||| | |||| |||||||||| |||||||||||||||||||    
T  38433640 taggggtgttcacggtgcagtttagttcggttttgagcataaaagtcattcaaaccgcgagataaaaaatcatgcggtttagtttggttcggttgatttt 38433739  T
Q  388 taaaaagtc-----atccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaata 482  Q
    |||||||||     | ||||||||||||||||||| |||||||||||| |||  ||||||| |||||||||||||        |||||||||||||||||    
T  38433740 taaaaagtcctccaaaccaaaccaaaccaatgcggcttggattggttcggtttgtgcggtttatcgcgagataaa-aaaaatattacattaactctaata 38433838  T
Q  483 ttgccaact 491  Q
    |||||||||    
T  38433839 ttgccaact 38433847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 12681204 - 12681009
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||| |||||||||  ||||||| | |||| || ||||||||| | |||||||||     |||||||||||||||||||||    
T  12681204 taggggtgttcgcggtgcggtttagttcggttttgagcataaaagtcattcagaccgcgagataaaaaagcatg-----tggtttggttcggttgatttt 12681110  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||| |||||||||||||||||||||||||||||||||||  |||  ||| ||| |||| ||||||||        ||||||||||||||||||||||    
T  12681109 taaaaattcatccaaaccaaaccaatgcggtttggattggttaggtttgtgcagtttatcgtgagataaa---aaatattacattaactctaatattgcc 12681013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 290 - 457
Target Start/End: Complemental strand, 17085375 - 17085208
Alignment:
Q  290 ggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttta 389  Q
    |||||||| ||||||||||||||||| ||||  ||||||| | ||||||||||| ||||| | ||||||||||| ||| |||||||||||||||||||||    
T  17085375 ggggtgtttgcggtgcggtttggttcagttttgagcataaaagtcatccaaaccacgagataaaaaagcatgcgatttagtttggttcggttgattttta 17085276  T
Q  390 aaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    ||||||||||| || |||||||||| || ||||||| |||| |||| |||| || |||| ||||||||    
T  17085275 aaaagtcatcccaatcaaaccaatgtggcttggattcgttcggttggtgcgatttatcgtgagataaa 17085208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 283 - 429
Target Start/End: Complemental strand, 12166307 - 12166163
Alignment:
Q  283 aattttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttg 382  Q
    |||| |||||||||||| ||| ||||| |||||||||| | |||||| | ||||| ||| ||||||| | |||||||||| |||||||||||||||||||    
T  12166307 aattgtaggggtgttcgaggtacggtt-ggttcggtttga-gcataaaagtcatcaaaatcgcgagataaaaaagcatgcagtttggtttggttcggttg 12166210  T
Q  383 atttttaaaaagtcatccaaaccaaaccaatgcggtttggattggtt 429  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  12166209 atttttaaaaagtcatccaaaccaaaccaatgcggcttggattggtt 12166163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 287 - 491
Target Start/End: Original strand, 9160922 - 9161131
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtt-----tggtttggttcggtt 381  Q
    |||| |||||||||||||||||||||||||||||  || | || | |||| |||||||||||| | ||||||||||||||     |||||||||||||||    
T  9160922 ttagaggtgttcgcggtgcggtttggttcggttttgagaaaaa-agtcattcaaaccgcgagata-aaaagcatgcggtttggtttggtttggttcggtt 9161019  T
Q  382 gatttttaaaaagtcat-----ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaact 476  Q
    |||||||||||||||||     |||||||||||||||||||||||||||||||| |||  ||||||| ||||| |||||||        |||||||||||    
T  9161020 gatttttaaaaagtcatccaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcaagataaa---aaatattacattaact 9161116  T
Q  477 ctaatattgccaact 491  Q
    |||||||||||||||    
T  9161117 ctaatattgccaact 9161131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 356 - 491
Target Start/End: Original strand, 35358947 - 35359085
Alignment:
Q  356 agcatgcggtttggtttggttcggttgatttttaaaaagtcatccaa-----accaaaccaatgcggtttggattggttcagttgatgcggttaatcgcg 450  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||     ||||||||||| ||| ||||||| |||| |||||||||||| ||||||    
T  35358947 agcatgcggtttggtttggttcggttgatatttaaaaagtcatccaaaccaaaccaaaccaatacggcttggattagttcggttgatgcggtttatcgcg 35359046  T
Q  451 agataaatnnnnnnnttacattaactctaatattgccaact 491  Q
    |||||||        ||||||||||||||||||||||||||    
T  35359047 agataaa--aaagtattacattaactctaatattgccaact 35359085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 323 - 491
Target Start/End: Complemental strand, 36177210 - 36177034
Alignment:
Q  323 agcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatcc----------aaaccaaaccaa 412  Q
    ||||||| | ||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||    
T  36177210 agcataaaagtcatccaaaccgcgagataaaaatgcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaacaaaaccaaaccaaaccaa 36177111  T
Q  413 tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaact 491  Q
    ||||| |||||||||||  |||  ||||||| ||||| |||||||        ||||||||||||||||||||||||||    
T  36177110 tgcggcttggattggttgggtttgtgcggtttatcgcaagataaa--aaaatattacattaactctaatattgccaact 36177034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 356 - 430
Target Start/End: Original strand, 10174096 - 10174170
Alignment:
Q  356 agcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttc 430  Q
    ||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10174096 agcatgcggtttggtttcgtttggttgatttttaaaaagttatccaaaccaaaccaatgcggtttggattggttc 10174170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 291 - 412
Target Start/End: Complemental strand, 36103749 - 36103627
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagc-atgcggtttggtttggttcggttgattttta 389  Q
    ||||||||||||||||||||||||||||||  ||||||| |  ||||||||  | |||| | ||||   ||||||||||||||||||| |||||||||||    
T  36103749 gggtgttcgcggtgcggtttggttcggttttgagcataaaatacatccaaagtgtgagataaaaaaaatatgcggtttggtttggttcagttgattttta 36103650  T
Q  390 aaaagtcatccaaaccaaaccaa 412  Q
    |||||||||||||||||||||||    
T  36103649 aaaagtcatccaaaccaaaccaa 36103627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 491
Target Start/End: Complemental strand, 32521280 - 32521154
Alignment:
Q  370 tttggttcggttgatttttaaaaagtcatccaaaccaaac-----caatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnn 464  Q
    |||||||||||||||||||||||| |||||||||||||||     |||||| |||||||||||||| |||  ||||||| |||| ||||||||           
T  32521280 tttggttcggttgatttttaaaaattcatccaaaccaaaccaaatcaatgcagtttggattggttcggtttgtgcggtttatcgtgagataaaaaaaaat 32521181  T
Q  465 nttacattaactctaatattgccaact 491  Q
     ||||||||||||||||||||||||||    
T  32521180 attacattaactctaatattgccaact 32521154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 23780770 - 23780839
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcat 360  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| | ||||||||    
T  23780770 gggtgttcgcggtgcggtttggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaagcat 23780839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 23867723 - 23867792
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcat 360  Q
    |||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||| | ||||||||    
T  23867723 gggtgttcgcggtgcggtttggttcggttttaagcataaaagtcatccaaaccgcgagataaaaaagcat 23867792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 27572185 - 27572081
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| ||||||||||||||||||||||  ||  ||| | |||||| |||||| ||  | ||||||||||||||||||||||||||||||  |||    
T  27572185 taggggtgtttgcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtcttt 27572086  T
Q  388 taaaa 392  Q
    |||||    
T  27572085 taaaa 27572081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 288 - 412
Target Start/End: Complemental strand, 9988995 - 9988876
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||| | ||||||| || ||||||||  | ||||| | ||||||||||| ||||| | |||| ||||     ||||||| |||||||||||||    
T  9988995 taggggtgttcacagtgcggtatgattcggttttgaacataaaagtcatccaaaccacgagataaaaaaacatg-----tggtttgattcggttgatttt 9988901  T
Q  388 taaaaagtcatccaaaccaaaccaa 412  Q
    |||||||||||||||| ||||||||    
T  9988900 taaaaagtcatccaaatcaaaccaa 9988876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 491 - 584
Target Start/End: Original strand, 35359344 - 35359437
Alignment:
Q  491 tagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatt 584  Q
    ||||||||| ||||||||| |||||       ||||||| |||||||||||| | |||||||||||||||||||||| |||| |||||||||||    
T  35359344 tagtaccaagcaattttaaatattcaaaaaaagaacttgaagttccaaaataacgttacaataccaataaaagttatctatccaaaataacatt 35359437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 427
Target Start/End: Original strand, 36567735 - 36567803
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    ||||||||||||| |||| |||||| ||||||||    || ||||||||||||||||||||||||||||    
T  36567735 atgcggtttggttcggtttggttgacttttaaaataaaattcaaaccaaaccaatgcggtttggattgg 36567803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 25495026 - 25495131
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||  ||||||||||||||||||  ||  ||| | ||||| ||||||| | | | | ||| |||| |||||||||  ||||||||||||    
T  25495026 ttaggggtgttcgctatgcggtttggttcggttttgaggctaaaagtcatctaaaccgcaacataaataagtatgcagtttggtttttttcggttgattt 25495125  T
Q  387 ttaaaa 392  Q
    ||||||    
T  25495126 ttaaaa 25495131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 41454927 - 41454971
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    ||||||||||||||||||||||||||||| || |||| |||||||    
T  41454927 ccaaaccaaaccaatgcggtttggattggatctgttggtgcggtt 41454971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 392
Target Start/End: Original strand, 40692502 - 40692541
Alignment:
Q  353 aaaagcatgcggtttggtttggttcggttgatttttaaaa 392  Q
    ||||||||||| ||||||||||||||||||| ||||||||    
T  40692502 aaaagcatgcgatttggtttggttcggttgacttttaaaa 40692541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 34881465 - 34881360
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||| ||||||||| ||||  ||| ||||  ||  ||| | ||||||||||| ||||| | |||||||  ||||||||||| |||| ||||| ||    
T  34881465 ttaggggtgctcgcggtgcagtttaattcagttttgaggctaaaagtcatccaaaccacgagataaaaaagcaaacggtttggtttagttcagttgactt 34881366  T
Q  387 ttaaaa 392  Q
    ||||||    
T  34881365 ttaaaa 34881360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 41061772 - 41061739
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggttt 320  Q
    |||||||||||||||||||||||||| |||||||    
T  41061772 ttaggggtgttcgcggtgcggtttggatcggttt 41061739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 27572064 - 27572020
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||||||||||||||||| |||| || |||| |||||||    
T  27572064 ccaaaccaaaccaatgcggtttgggttggatcggttggtgcggtt 27572020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 248; Significance: 1e-137; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 51149797 - 51149485
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  51149797 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 51149698  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  51149697 taaaaagtgatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcc 51149598  T
Q  488 aactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 587  Q
    |||||||||||| |||||||||||||||       ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51149597 aactagtaccaagcaattttaattattcaaaaaaagaacttgaag-tccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 51149499  T
Q  588 gtaccaaaataata 601  Q
    ||||||||||||||    
T  51149498 gtaccaaaataata 51149485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 34794537 - 34794849
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  34794537 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttt 34794636  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  34794637 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaat-aaaaaattacattaactctaatattgcc 34794735  T
Q  488 aactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 587  Q
    |||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  34794736 aactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataacagttatttatctaaaataacattaca 34794835  T
Q  588 gtaccaaaataata 601  Q
     |||||||||||||    
T  34794836 ataccaaaataata 34794849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 287 - 601
Target Start/End: Complemental strand, 35402346 - 35402027
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||    
T  35402346 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaatcgcgagagaaaaaaacatgcggtttggtttggttcggttgattt 35402247  T
Q  387 ttaaaaagtcatccaaaccaaa-----ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaat 481  Q
    ||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||    
T  35402246 ttaaaaagtcatccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaat 35402147  T
Q  482 attgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataac 581  Q
    |||||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35402146 attgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaataac 35402047  T
Q  582 attacagtaccaaaataata 601  Q
    |||||||||||||| |||||    
T  35402046 attacagtaccaaagtaata 35402027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 10369154 - 10369477
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||| |||||| ||||||||    
T  10369154 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaactgcgagagaaaaaaacatgcggtttggttcggttcgtttgatttt 10369253  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||| |    
T  10369254 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaacac 10369353  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    |||||||||||| ||||||||| |||||||||||||||       ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  10369354 taatattgccaattagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattaaaataccaataaaagttatttatctaaaa 10369453  T
Q  578 taacattacagtaccaaaataata 601  Q
    ||||||||||||||||||||||||    
T  10369454 taacattacagtaccaaaataata 10369477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 162; E-Value: 4e-86
Query Start/End: Original strand, 288 - 515
Target Start/End: Complemental strand, 4669787 - 4669550
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  4669787 taggagtgtttgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 4669688  T
Q  388 taaaaagtcatccaaaccaaa----------ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    ||||||||||||| |||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  4669687 taaaaagtcatccgaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactc 4669588  T
Q  478 taatattgccaactagtaccaaacaattttaattattc 515  Q
    |||||||||||||||||||||| |||||||||||||||    
T  4669587 taatattgccaactagtaccaagcaattttaattattc 4669550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 155; E-Value: 6e-82
Query Start/End: Original strand, 360 - 601
Target Start/End: Original strand, 33360968 - 33361219
Alignment:
Q  360 tgcggtttggtttggttcggttgatttttaaaaagtcatccaa----------accaaaccaatgcggtttggattggttcagttgatgcggttaatcgc 449  Q
    |||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||    
T  33360968 tgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgc 33361067  T
Q  450 gagataaatnnnnnnnttacattaactctaatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattac 549  Q
    |||||||||       |||||||||||||||||||||||||||||||||| ||||||||||||||        ||||||| ||||||||||||| |||||    
T  33361068 gagataaataaaaaaattacattaactctaatattgccaactagtaccaagcaattttaattattaaaaaaaagaacttgaagttccaaaatagtattac 33361167  T
Q  550 aataccaataaaagttatttatctaaaataacattacagtaccaaaataata 601  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33361168 aataccaataaaagttatttatctaaaataacactacagtaccaaaataata 33361219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 6004527 - 6004327
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| ||| ||||||||||||||||||  ||||||| | ||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  6004527 taggggtgtttgcgatgcggtttggttcggttttcagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgatttt 6004428  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||  ||||||| |||||||||||||        ||||||||||||||||||||||    
T  6004427 taaaaagtcatccaaaccaaaccaatgcggtttggattgattcggtttgtgcggtttatcgcgagataaa---aaatattacattaactctaatattgcc 6004331  T
Q  488 aact 491  Q
    ||||    
T  6004330 aact 6004327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 9827918 - 9827719
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||| |||||||||||| |||||||| | ||||||||||| ||||| |   |||||||||  ||| ||||||| ||||||||||    
T  9827918 taggggtgttcgcggtgcggcttggttcggttttaagcataaaagtcatccaaaccacgagataattaagcatgcgacttgatttggttaggttgatttt 9827819  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| |||||||||||||        |||||||||||||||||||||     
T  9827818 taaaaagtcatccaaaccaaaccaatacggcttggattggttcagttggtgcggtttatcgcgagataaa----aaaattacattaactctaatattgcg 9827723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 287 - 491
Target Start/End: Original strand, 32880242 - 32880445
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||| ||||| ||||||||||||||||||| ||  ||||||| | || |||||||||||||| | ||||||||| |||||| |||||||||||||||||    
T  32880242 ttaggagtgtttgcggtgcggtttggttcggctttgagcataaaagtcctccaaaccgcgagataaaaaagcatgtggtttgatttggttcggttgattt 32880341  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    |||||||||||| |||||||||||||| ||||||| |||||||| |||  ||||||| |||||||||||||        ||||||||||||||||||||     
T  32880342 ttaaaaagtcatacaaaccaaaccaatacggtttgaattggttcggtttgtgcggtttatcgcgagataaa-aaaaatattacattaactctaatattgt 32880440  T
Q  487 caact 491  Q
    |||||    
T  32880441 caact 32880445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 50562710 - 50562509
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||| |||||||||||||||||||| ||| |||||||| | ||||| ||||  ||||| | ||||||||| |||||||||||||||||||||||||    
T  50562710 taggggtgatcgcggtgcggtttggttcgattttaagcataaaagtcatctaaactacgagataaaaaagcatgtggtttggtttggttcggttgatttt 50562611  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||| |||||| || ||||||||| ||| |||||||||||| |||  ||||||| |||||||||||||        ||||||||||||||||||||||    
T  50562610 taaaaattcatcccaatcaaaccaattcggcttggattggttcggtttgtgcggtttatcgcgagataaa--aaaatattacattaactctaatattgcc 50562513  T
Q  488 aact 491  Q
    ||||    
T  50562512 aact 50562509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 290 - 457
Target Start/End: Complemental strand, 21586981 - 21586814
Alignment:
Q  290 ggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttta 389  Q
    ||||||||| |||||| ||||||||||||||  ||| ||| | ||||||||||||||||| | |||||||||| |||||||||| ||| |||||||||||    
T  21586981 ggggtgttcacggtgcagtttggttcggttttgagcttaaaagtcatccaaaccgcgagataaaaaagcatgcagtttggtttgattcagttgattttta 21586882  T
Q  390 aaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    |||||||||||||||||||||||||| | |||||||||||| |||  ||| ||| |||||||||||||    
T  21586881 aaaagtcatccaaaccaaaccaatgcagcttggattggttcggtttgtgcagtttatcgcgagataaa 21586814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 353 - 434
Target Start/End: Complemental strand, 48032923 - 48032843
Alignment:
Q  353 aaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagtt 434  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  48032923 aaaagcatgcggtttggtt-ggttcggttgatttttaaaaattcatccaaaccaaaccaatgcggtttggattggttcagtt 48032843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 524 - 601
Target Start/End: Complemental strand, 4669493 - 4669416
Alignment:
Q  524 aacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattacagtaccaaaataata 601  Q
    |||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  4669493 aacttgaagttcaaaaatagcattacaataccaatgaaagttatttatctaaaataacattacagtaccaaaataata 4669416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 287 - 412
Target Start/End: Original strand, 43030358 - 43030483
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||| ||  ||||  ||||||| | |||| | || ||| ||| | ||||| |||| |||||||||||||||||||||||    
T  43030358 ttaggggtgttcgcggtgcggtttgatttagttttgagcataaaagtcatgcgaatcgcaagataaaaaagtatgcagtttggtttggttcggttgattt 43030457  T
Q  387 ttaaaaagtcatccaaaccaaaccaa 412  Q
    |||||||||||||||||| |||||||    
T  43030458 ttaaaaagtcatccaaactaaaccaa 43030483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 286 - 392
Target Start/End: Complemental strand, 26292098 - 26291992
Alignment:
Q  286 tttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatt 385  Q
    ||||||||||||||||||||||||||||||| ||| ||   ||| ||||||||||||||| ||| | ||||   ||||||||| ||||||||||||||||    
T  26292098 tttaggggtgttcgcggtgcggtttggttcgattttaaaattaaaaatcatccaaaccgcaagataaaaaattgtgcggtttgctttggttcggttgatt 26291999  T
Q  386 tttaaaa 392  Q
    |||||||    
T  26291998 tttaaaa 26291992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 288 - 443
Target Start/End: Complemental strand, 55467782 - 55467622
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||| ||||| ||||||||||||||||||||||  ||  ||| | |||||| ||| || ||| | | ||| ||||||||||||||||||||||||| |||    
T  55467782 taggtgtgtttgcggtgcggtttggttcggttttgaggctaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttgacttt 55467683  T
Q  388 taa---aaagtc--atccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||   ||| ||  | ||||| ||||||||||||||||||||||| ||||||| |||||||    
T  55467682 taaaataaaatccgaaccaaatcaaaccaatgcggtttggattggatcagttggtgcggtt 55467622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 287 - 443
Target Start/End: Complemental strand, 38652129 - 38651974
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||| ||||||||||||||||||| |||||  |   ||| | |||||| || ||| ||| | ||||  ||||||||||||||||||||||||| ||    
T  38652129 ttaggggtattcgcggtgcggtttggtttggttttgaaggtaaaagtcatccgaatcgcaagataaaaaat-atgcggtttggtttggttcggttgactt 38652031  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    | ||||    ||||||||||||| |||||||||||| |||| || ||||||||||||    
T  38652030 taaaaataatatccaaaccaaactaatgcggtttgggttggatcggttgatgcggtt 38651974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 407
Target Start/End: Original strand, 39097891 - 39098010
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaga---aaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||  ||||||||||| |||  ||||||| | |||||||||| ||  | ||||   ||| ||||||||||| |||||||| |||||||||    
T  39097891 gggtgttcgcggtttggtttggttcgattttgagcataaaagtcatccaaactgcatgcgagataaaaaacatgcggtttgatttggttcagttgatttt 39097990  T
Q  388 taaaaagtcatccaaaccaa 407  Q
    ||||||||| ||||||||||    
T  39097991 taaaaagtcgtccaaaccaa 39098010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 292 - 392
Target Start/End: Complemental strand, 17144865 - 17144766
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    ||||||||| |||||||||||||||||||  ||  ||| | ||||||||||||| ||| | ||||| |||||| |||||||||||||||||| |||||||    
T  17144865 ggtgttcgcagtgcggtttggttcggttttgaggctaaaagtcatccaaaccgcaagata-aaaagtatgcggattggtttggttcggttgacttttaaa 17144767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 531 - 581
Target Start/End: Complemental strand, 9817806 - 9817756
Alignment:
Q  531 agttccaaaatagcattacaataccaataaaagttatttatctaaaataac 581  Q
    ||||||||||||  |||||||||||||||||||||||||||| ||||||||    
T  9817806 agttccaaaataaaattacaataccaataaaagttatttatccaaaataac 9817756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 294 - 392
Target Start/End: Original strand, 20846418 - 20846518
Alignment:
Q  294 tgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaag--catgcggtttggtttggttcggttgatttttaaa 391  Q
    |||||||||||| ||||||||||||||| ||  ||| | |||||| |||||| ||| | ||||   |||||| ||||||||||||||||||| |||||||    
T  20846418 tgttcgcggtgcagtttggttcggtttcgagagtaaaagtcatccgaaccgcaagataaaaaaatacatgcgctttggtttggttcggttgacttttaaa 20846517  T
Q  392 a 392  Q
    |    
T  20846518 a 20846518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 20038443 - 20038487
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    ||||||||||||||||||||||||||||||||| ||| |||||||    
T  20038443 ccaaaccaaaccaatgcggtttggattggttcaattgttgcggtt 20038487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 359 - 443
Target Start/End: Complemental strand, 45915272 - 45915189
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    ||||||||||||||||||||||||| ||||||||    | |||||||| |||||||||||||| ||||| || |||| |||||||    
T  45915272 atgcggtttggtttggttcggttgacttttaaaaccaaa-ccaaaccagaccaatgcggtttgaattggatcggttggtgcggtt 45915189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 288 - 371
Target Start/End: Complemental strand, 35532276 - 35532193
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtt 371  Q
    ||||||| || || |||| ||||||||||||||  ||||||| | |||||||||  |||||| | |||||||||||||||||||    
T  35532276 taggggtattagcagtgcagtttggttcggttttgagcataaaagtcatccaaattgcgagataaaaaagcatgcggtttggtt 35532193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 381
Target Start/End: Complemental strand, 2832540 - 2832446
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggtt 381  Q
    |||||| ||||||||||| ||||||||| |||||  ||  ||| | |||||| |||| | ||| | |||||||||||||||||||||||| ||||    
T  2832540 ttagggttgttcgcggtgtggtttggtttggttttgaggctaaaagtcatccgaaccacaagataaaaaagcatgcggtttggtttggtttggtt 2832446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 26758165 - 26758270
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||| |||||| ||||  | ||||||||||||| |||  ||| | |||||| |||||| ||| | | ||| || |||||||||||||||||||||| ||    
T  26758165 ttaggcgtgttcacggtatgatttggttcggttttaaggttaaaagtcatccgaaccgcaagataaataagtatacggtttggtttggttcggttgactt 26758264  T
Q  387 ttaaaa 392  Q
    ||||||    
T  26758265 ttaaaa 26758270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 40483864 - 40483969
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||||  |||||||||| |||| ||| ||   ||| |||||| | |||| | ||| | ||| ||||||||||||||||||||| ||||| ||    
T  40483864 ttaggggtgttcgttgtgcggtttgattcgattttaaagttaaaaatcattcgaaccacaagataaaaatgcatgcggtttggtttggttcagttgactt 40483963  T
Q  387 ttaaaa 392  Q
    ||||||    
T  40483964 ttaaaa 40483969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 392
Target Start/End: Complemental strand, 42363362 - 42363261
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    |||||||||| |||||||||||||||||||  ||  ||| | | ||   |||||| ||| | |||| |||||||||||||||||||||||||| ||| ||    
T  42363362 gggtgttcgcagtgcggtttggttcggttttgagggtaaaagtaatttgaaccgcaagataaaaaatcatgcggtttggtttggttcggttgactttaaa 42363263  T
Q  391 aa 392  Q
    ||    
T  42363262 aa 42363261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 359 - 443
Target Start/End: Original strand, 51191718 - 51191807
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaacca-----atgcggtttggattggttcagttgatgcggtt 443  Q
    ||||||||||||||||||||||||  |||||||| |  | || ||||||||||     ||||||||||||||||||| |||| |||||||    
T  51191718 atgcggtttggtttggttcggttggattttaaaatgaaaaccgaaccaaaccaaaccgatgcggtttggattggttcggttgttgcggtt 51191807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 54121967 - 54122067
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    |||||| ||||||| ||||| |||| |||  ||  ||| | |||||| |||||  ||| | ||||| ||||||||||||||||||||||||| |||||||    
T  54121967 ggtgtttgcggtgcagtttgattcgattttgaggttaaaagtcatccgaaccgtaagataaaaaagtatgcggtttggtttggttcggttgacttttaaa 54122066  T
Q  392 a 392  Q
    |    
T  54122067 a 54122067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 457
Target Start/End: Original strand, 43030485 - 43030543
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    ||||||||||||||||| ||||| |||||||| |||  || |||| |||||||||||||    
T  43030485 ccaaaccaaaccaatgcagtttgaattggttcggtttgtgtggtttatcgcgagataaa 43030543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 378 - 491
Target Start/End: Complemental strand, 35532196 - 35532091
Alignment:
Q  378 ggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||| |||||||||     ||||||||| |||||||| ||  |||  ||||||| |||||||||||||        || |||||||||    
T  35532196 ggttgatttttaaaaattcatccaaa-----ccaatgcggattggattgatttggtttgtgcggtttatcgcgagataaa---aaatatttcattaactc 35532105  T
Q  478 taatattgccaact 491  Q
    ||||||||||||||    
T  35532104 taatattgccaact 35532091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 427
Target Start/End: Original strand, 52631980 - 52632120
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccg-cgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||| ||||| || || |||||||||||| ||| |||  ||| | |||||||||| | | ||| | |||| || ||||||||||||| ||||||| | ||    
T  52631980 taggagtgtttgctgtacggtttggttcgtttttaaggctaaaagtcatccaaacagacaagataaaaaaacacgcggtttggtttgattcggttaactt 52632079  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    ||||||    |||| |||||||||||||| |||||| ||||    
T  52632080 ttaaaatacaatccgaaccaaaccaatgcagtttgggttgg 52632120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 49)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 36077515 - 36077828
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  36077515 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcattcaaaccgcgagagaaaaaagtatgcggtttggtttggttcggttgatttt 36077614  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||    
T  36077615 taaaaagtcatccaaaccaaaccaatacggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactctaatattgcc 36077714  T
Q  488 aactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattaca 587  Q
    |||||||||||| |||||||||||||||       ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36077715 aactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaaaagcattacaataccaataaaagttatttatctaaaataacattaca 36077814  T
Q  588 gtaccaaaataata 601  Q
    ||||||||||||||    
T  36077815 gtaccaaaataata 36077828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 50571098 - 50570775
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  50571098 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 50570999  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  50570998 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactc 50570899  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    ||||||||||||||||||||||||||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  50570898 taatattgccaactagtaccaaacaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 50570799  T
Q  578 taacattacagtaccaaaataata 601  Q
    ||||||||||||||||||||||||    
T  50570798 taacattacagtaccaaaataata 50570775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 29636716 - 29637039
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29636716 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 29636815  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    ||||||| |||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  29636816 taaaaagccatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactc 29636915  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    |||||||||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  29636916 taatattgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 29637015  T
Q  578 taacattacagtaccaaaataata 601  Q
    ||||||| ||||||||||||||||    
T  29637016 taacattccagtaccaaaataata 29637039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 287 - 601
Target Start/End: Original strand, 42557666 - 42557989
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  42557666 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcattcaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 42557765  T
Q  387 ttaaaaagtcatccaaaccaaa----------ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaact 476  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  42557766 ttaaaaagtcatccaaaccaaatcaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaact 42557865  T
Q  477 ctaatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaa 576  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||| ||| |||||||| |||||||||||||||||||||||||||||||||    
T  42557866 ctaatattgccaactagtaccaaacaattttaattattcaaaaaaagaacttgaagt-ccaaaataacattacaataccaataaaagttatttatctaaa 42557964  T
Q  577 ataacattacagtaccaaaataata 601  Q
    |||||||||||||||||||||||||    
T  42557965 ataacattacagtaccaaaataata 42557989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 10 - 204
Target Start/End: Original strand, 4792357 - 4792551
Alignment:
Q  10 agtgagatgaatggtcaacaaaataattttgatcattggactgattcgacatttggtgtatgactagaacaaacacatgttgattgtagtgaggagtaga 109  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  4792357 agtgatatgaatggtcaacaaaataattttgatcattggactgattcgacatttggtgtatgactggaacaaacacatgttgattgtagtgaggagtaga 4792456  T
Q  110 agattgatttggattgttggataaatttcatggatgatgtatggttgaaacggtcgtgtggtaaacttaatggttaagtgattaatcatgattgt 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  4792457 agattgatttggattgttggataaatttcatggatgatgtatggttgaaacggtcgtgtggtaaacttaatggttaaatgattaatcatgattgt 4792551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 287 - 514
Target Start/End: Complemental strand, 29644266 - 29644029
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  29644266 ttaggggtgttcgcggtgcggtttggttcggtttcaaacataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 29644167  T
Q  387 ttaaaaagtcatccaaaccaaa----------ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaact 476  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||| ||||||||||||||||||||||||||       |||||||||||    
T  29644166 ttaaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcaattgatgcggttaatcgcgagataaataaaaaaattacattaact 29644067  T
Q  477 ctaatattgccaactagtaccaaacaattttaattatt 514  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  29644066 ctaatattgccaactagtaccaagcaattttaattatt 29644029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 287 - 491
Target Start/End: Complemental strand, 30194117 - 30193914
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaa-gcatgcggtttggtttggttcggttgatt 385  Q
    ||||||||||||||||||||||||| ||||| || ||| | || | |||| ||||||| |||| | |||| |||||||||||||||||||||||||||||    
T  30194117 ttaggggtgttcgcggtgcggtttgattcgggtttaagtaaaaaagtcattcaaaccgtgagataaaaaaagcatgcggtttggtttggttcggttgatt 30194018  T
Q  386 tttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattg 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||        ||||||||||||||||||||    
T  30194017 tttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcggtttatgcggtttatcgcgagataaa--aaaatattacattaactctaatattg 30193920  T
Q  486 ccaact 491  Q
    ||||||    
T  30193919 ccaact 30193914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 40900223 - 40900018
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||||||||||  ||||||| | |||||||||| |||||| | ||||||||||||||||||||||||| |||||||||    
T  40900223 taggggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgcggtttggtttggttcagttgatttt 40900124  T
Q  388 taaaaagtcatccaaaccaaa-----ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaata 482  Q
    |||||||||||||||||||||     |||||||||||||||||||||  |||  ||||||| |||||||||||||        |||||||||||||||||    
T  40900123 taaaaagtcatccaaaccaaaccaaaccaatgcggtttggattggtttggtttgtgcggtttatcgcgagataaa---aaatattacattaactctaata 40900027  T
Q  483 ttgccaact 491  Q
    |||||||||    
T  40900026 ttgccaact 40900018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 291 - 491
Target Start/End: Complemental strand, 5262101 - 5261904
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||||||| ||||||||| ||||||||  ||||||| | ||||||||||||| ||| | |||||||||||||||||||| |||| ||||||||||||    
T  5262101 gggtgttcgcgatgcggtttgattcggttttgagcataaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttagttcagttgatttttaa 5262002  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaac 490  Q
    |||||||||||||||||||||||   | |||||||||||| |||||||||||| |||||||||| ||        |||||||||||||||||||||||||    
T  5262001 aaagtcatccaaaccaaaccaatttagcttggattggttcggttgatgcggtttatcgcgagattaa---aaatattacattaactctaatattgccaac 5261905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 48996027 - 48996228
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||| ||| ||||||||||| ||| || ||||| ||||||||||||||||| | | ||||||||| |||||||||||||||||||||||||    
T  48996027 taggggtgttcgcagtgtggtttggttcgattttaatcataaaaatcatccaaaccgcgaaataaaaaagcatgtggtttggtttggttcggttgatttt 48996126  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    |||||||| ||||||||||||||||||||| ||||||||||||  ||  ||||||| ||||| |||||||        |||||||||||||||||||| |    
T  48996127 taaaaagttatccaaaccaaaccaatgcggcttggattggttcgatttgtgcggtttatcgcaagataaa--aaaatattacattaactctaatattgtc 48996224  T
Q  488 aact 491  Q
    ||||    
T  48996225 aact 48996228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 40806958 - 40806751
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| |||||| |||||||||||||||  ||||||| | ||||||||||||||||| | ||||||||||| |||||||||||||||||||||||    
T  40806958 taggggtgtttgcggtgtggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcgatttggtttggttcggttgatttt 40806859  T
Q  388 taaaaagtcatccaaaccaaa-----ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaata 482  Q
    |||||| ||||||||||||||     ||||||| |||||||||||||| |||  ||||||| ||| |||||||||        |||||||||||||||||    
T  40806858 taaaaaatcatccaaaccaaaccaaaccaatgcagtttggattggttcggtttgtgcggtttatcacgagataaa-aaaaatattacattaactctaata 40806760  T
Q  483 ttgccaact 491  Q
    ||| |||||    
T  40806759 ttgtcaact 40806751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 287 - 457
Target Start/End: Original strand, 43630519 - 43630689
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||| |||||||||||||||||||||||| |||  || |||| | |||||||||||| |||| | ||||  |||||||||||||||||| |||||||||    
T  43630519 ttaggagtgttcgcggtgcggtttggttcgattttgagtataaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttggtttggttgattt 43630618  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    ||||||||||||||||| ||||||||||||| |||||||||||| |||  ||| ||| |||| ||||||||    
T  43630619 ttaaaaagtcatccaaatcaaaccaatgcggcttggattggttcggtttgtgcagtttatcgtgagataaa 43630689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 288 - 500
Target Start/End: Original strand, 32136635 - 32136850
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| || |||||||||||||||||||  | ||||| | ||| ||||||| ||||| | ||||||||||| |||||||||||||| ||||||||    
T  32136635 taggggtgtttgcagtgcggtttggttcggttttgaacataaaagtcacccaaacctcgagataaaaaagcatgcgatttggtttggttcgattgatttt 32136734  T
Q  388 taaaaagtcat-----ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaata 482  Q
    |||||| ||||     |||||||||||||||||||||||||||||||| |||  ||||||| |||| ||||||||        |||||||||||||||||    
T  32136735 taaaaattcatccaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgtgagataaa--aaaatattacattaactctaata 32136832  T
Q  483 ttgccaactagtaccaaa 500  Q
    ||| ||||| ||| ||||    
T  32136833 ttgtcaacttgtaacaaa 32136850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 6333259 - 6333465
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||| |||  |||| || | ||||||||||||||||| | ||||||||||||||||||||     ||||||||||    
T  6333259 taggggtgttcgcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgcgagataaaaaagcatgcggtttggttt-----ggttgatttt 6333353  T
Q  388 taaaaagtcat----------ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||          |||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||        ||||||||||||    
T  6333354 taaaaagtcatccaaatcaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaa--aaaaaattacattaactc 6333451  T
Q  478 taatattgccaact 491  Q
    ||||||| ||||||    
T  6333452 taatattaccaact 6333465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 287 - 454
Target Start/End: Complemental strand, 23937659 - 23937492
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||| |||||| ||||||||||| ||  ||||  ||||||| | ||||| ||||  ||||| | ||||  ||||||||||||||||||||||||||||    
T  23937659 ttagggatgttcgtggtgcggtttgatttagttttgagcataaaagtcatctaaactacgagataaaaaaatatgcggtttggtttggttcggttgattt 23937560  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagat 454  Q
    ||||||||||||||||||||||||||||| | |||||||||||| |||  ||||||| || |||||||    
T  23937559 ttaaaaagtcatccaaaccaaaccaatgcagcttggattggttcggtttgtgcggtttattgcgagat 23937492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 290 - 491
Target Start/End: Original strand, 51394663 - 51394862
Alignment:
Q  290 ggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttta 389  Q
    |||||||||||||||| ||||||||| ||||  ||||||| | ||||||||||||||||| | ||||||||||     |||||| |||||||||||||||    
T  51394663 ggggtgttcgcggtgcagtttggttcagttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgc-----ggtttgattcggttgattttta 51394757  T
Q  390 aaaagt-----catccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatatt 484  Q
    ||||||     || |||||||||||||||| |  || |||||||||||||||||||||| |||||||||||||        ||||||||| |||||||||    
T  51394758 aaaagtctttccaaccaaaccaaaccaatgtgactttgattggttcagttgatgcggtttatcgcgagataaa--aaaatattacattaattctaatatt 51394855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 291 - 491
Target Start/End: Original strand, 52344683 - 52344876
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    |||||||||||||||||||||| | | |||  ||||||| | |||||||||||| |||| | ||||||||||||||     ||||||| || ||||||||    
T  52344683 gggtgttcgcggtgcggtttgggttgattttgagcataaaagtcatccaaaccgtgagataaaaaagcatgcggtt-----tggttcgattaatttttaa 52344777  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaac 490  Q
    ||||||||||||||||||||||||||| |||||||||||| |||  ||||||| ||| | |||||||        || ||||||||||||||||||||||    
T  52344778 aaagtcatccaaaccaaaccaatgcggattggattggttcggtttgtgcggtttatcacaagataaa--aaaatattccattaactctaatattgccaac 52344875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 207 - 287
Target Start/End: Original strand, 4792596 - 4792676
Alignment:
Q  207 tgattgtaatgagtataagattaatttttgttggtttgatttaatgattgatgcatggcagaaatgataatgtatgaattt 287  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4792596 tgattgtaatgagtagaagattgatttttgttggtttgatttaatgattgatgcatggtagaaatgataatgtatgaattt 4792676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 287 - 491
Target Start/End: Original strand, 10218620 - 10218832
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| |||||||| |||||||||||||  ||||||| | ||||| ||||| | ||| | ||||||||||||||||||||| ||| ||||||||    
T  10218620 ttaggggtgtttgcggtgcgttttggttcggttttgagcataaaagtcatctaaacctcaagataaaaaagcatgcggtttggtttgattcagttgattt 10218719  T
Q  387 ttaaaaagtcat----------ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaact 476  Q
    ||| | ||||||          |||||||||||||||||||||||||||||||| |||  | ||||| |||||||||| ||        |||||||||||    
T  10218720 ttatatagtcatccaaacaaaaccaaaccaaaccaatgcggtttggattggttcggtttgtacggtttatcgcgagatgaa--aaaatattacattaact 10218817  T
Q  477 ctaatattgccaact 491  Q
    |||||||||||||||    
T  10218818 ctaatattgccaact 10218832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 289 - 427
Target Start/End: Complemental strand, 48293544 - 48293406
Alignment:
Q  289 aggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttt 388  Q
    ||||||||||||||||| ||||||||||||||  ||  ||| | |||||| |||||| ||  | ||||||||||||||||||||||||||||||  ||||    
T  48293544 aggggtgttcgcggtgcagtttggttcggttttgaggttaaaagtcatccgaaccgcaaggtaaaaaagcatgcggtttggtttggttcggttgtctttt 48293445  T
Q  389 aaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    ||||    |||| ||||||||||||||||||||| ||||    
T  48293444 aaaataaaatccgaaccaaaccaatgcggtttgggttgg 48293406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 287 - 404
Target Start/End: Complemental strand, 13690989 - 13690872
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||| ||||||| | |||||||||||||| ||| |||||||| | ||||||||||||||||| |  ||| ||| | ||||| |||| ||||||||||||    
T  13690989 ttaggtgtgttcgtgatgcggtttggttcgattttaagcataaaagtcatccaaaccgcgagataataaaacatacagtttgatttgattcggttgattt 13690890  T
Q  387 ttaaaaagtcatccaaac 404  Q
    ||||||||||||||||||    
T  13690889 ttaaaaagtcatccaaac 13690872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 368 - 487
Target Start/End: Complemental strand, 8176657 - 8176540
Alignment:
Q  368 ggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnntt 467  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||  ||||||| |||| || |||||        ||    
T  8176657 ggtttggtttggttgatttttaaaaagtcatctaaaccaaaccaatgcggcttggattggttcggtttgtgcggtttatcgtgaaataaa--aaaatatt 8176560  T
Q  468 acattaactctaatattgcc 487  Q
    ||||||||||||||||||||    
T  8176559 acattaactctaatattgcc 8176540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 287 - 443
Target Start/End: Complemental strand, 36106561 - 36106399
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcgg-tttggtttggttcggttgatt 385  Q
    |||||| |||||||||||||||||||||||||||  ||  ||| | |||||| |||||| ||| | |||| ||||||| ||||||||||||||||||| |    
T  36106561 ttagggatgttcgcggtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaagataaaaaaacatgcggttttggtttggttcggttgact 36106462  T
Q  386 tttaa---aaagtc--atccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||   ||| ||  | |||||||||||||||||||||||  |||| ||||||| |||||||    
T  36106461 tttaaaataaaatccgaaccaaaccaaaccaatgcggtttgagttggatcagttggtgcggtt 36106399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 288 - 412
Target Start/End: Complemental strand, 23120397 - 23120273
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||| |||| |||  |   ||| | |||||| |||||| ||| | |||||||||||||||||||||||||| |||| |||    
T  23120397 taggggtgttcgcggtgcggtttgattcgattttgaaggtaaaagtcatccgaaccgcaagataaaaaagcatgcggtttggtttggttcgattgacttt 23120298  T
Q  388 taaaaagtcatccaaaccaaaccaa 412  Q
     |||||  |||||||||||||||||    
T  23120297 aaaaaaaacatccaaaccaaaccaa 23120273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 287 - 378
Target Start/End: Original strand, 31301237 - 31301328
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcg 378  Q
    ||||||||||| ||||||| ||||||||  ||||  ||||||| | ||||||||||||||||| | |||| |||||||||||||||||||||    
T  31301237 ttaggggtgtttgcggtgcagtttggtttagttttgagcataaaagtcatccaaaccgcgagataaaaaaacatgcggtttggtttggttcg 31301328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 293 - 427
Target Start/End: Complemental strand, 23450119 - 23449985
Alignment:
Q  293 gtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaa 392  Q
    ||||| ||||||| |||| |||||||||  ||  ||| | |||||| ||| || ||| | | ||| ||||||||||||||||||||||| | ||||||||    
T  23450119 gtgtttgcggtgcagtttagttcggttttgaggttaaaagtcatccgaactgcaagataaataagtatgcggtttggtttggttcggttaacttttaaaa 23450020  T
Q  393 agtcatccaaaccaaaccaatgcggtttggattgg 427  Q
      | ||||| |||||||||||||||||||||||||    
T  23450019 tataatccacaccaaaccaatgcggtttggattgg 23449985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 288 - 441
Target Start/End: Original strand, 45983326 - 45983479
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcgg-tttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||| | ||||| ||||||||||| ||| ||| |||| | | |||  |||||| ||| | |||| |||||||||||||||| ||||||||| ||    
T  45983326 taggggtgtttgtggtgcagtttggttcggctttgaag-ataaaagttatctgaaccgcaagataaaaaatcatgcggtttggtttgattcggttgactt 45983424  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcgg 441  Q
    | ||||   |||||||||||||| |||||||||||| |||| || ||||||||||    
T  45983425 taaaaataacatccaaaccaaactaatgcggtttgggttggatcggttgatgcgg 45983479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 523 - 599
Target Start/End: Complemental strand, 5261611 - 5261537
Alignment:
Q  523 gaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacattacagtaccaaaataa 599  Q
    ||||||| |||||||||||| |||||||||||||||||||||||| |||| ||||||||||  ||| ||||||||||    
T  5261611 gaacttgaagttccaaaataacattacaataccaataaaagttatctatccaaaataacat--cagaaccaaaataa 5261537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 5122525 - 5122420
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| ||||||||||||||||||||||  ||  ||| | ||||  ||||| | ||| | |||||||||||||||| |||||||||||||| ||    
T  5122525 ttaggggtgtttgcggtgcggtttggttcggttttgagggtaaaagtcatataaaccacaagataaaaaagcatgcggtttgatttggttcggttgactt 5122426  T
Q  387 ttaaaa 392  Q
    | ||||    
T  5122425 taaaaa 5122420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 48338285 - 48338407
Alignment:
Q  289 aggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttt 388  Q
    |||||| || ||||||| |||||||||||||| |||  ||| | |||||| |||||  ||| | |||| ||||| |||||||||||||||||||| ||||    
T  48338285 aggggtatttgcggtgcagtttggttcggttttaaggttaaaagtcatccgaaccgtaagataaaaaa-catgcagtttggtttggttcggttgactttt 48338383  T
Q  389 aaaaagtcatccaaaccaaaccaa 412  Q
    ||||    ||||||||||||||||    
T  48338384 aaaataaaatccaaaccaaaccaa 48338407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 48602587 - 48602504
Alignment:
Q  360 tgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||||||||||||||||| ||| ||||    |||| ||||||||||||||||||||| |||| || |||| |||||||    
T  48602587 tgcggtttggtttggttcggttgactttgaaaatacaatcctaaccaaaccaatgcggtttgggttggatcggttggtgcggtt 48602504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 392
Target Start/End: Original strand, 20986364 - 20986468
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttc-aagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||| ||| ||||||||| ||||||||  |||| ||| | ||||||||||||| ||| | | ||| ||||||||||||||||||||||||| ||    
T  20986364 taggggtgtttgcgatgcggtttgtttcggttttgaagc-taaaagtcatccaaaccgcaagataaacaagtatgcggtttggtttggttcggttgactt 20986462  T
Q  387 ttaaaa 392  Q
     |||||    
T  20986463 ataaaa 20986468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 599
Target Start/End: Original strand, 51395165 - 51395231
Alignment:
Q  531 agttccaaaatagcattacaataccaataaaagttatttatctaaaataacattacagtaccaaaataa 599  Q
    |||||||||||| |||||||||||||||||||||||| | || ||||||||||  ||| ||||||||||    
T  51395165 agttccaaaataacattacaataccaataaaagttatctttccaaaataacat--cagaaccaaaataa 51395231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 32223459 - 32223355
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||| ||||||||  ||  ||| | ||||||||| ||  ||| | ||||||||||||||||| || |||| ||| | |||    
T  32223459 taggggtgttcgcggtgcggtttgattcggttttgaggttaaaagtcatccaaatcgaaagataaaaaagcatgcggtttggatttgttccgtttacttt 32223360  T
Q  388 taaaa 392  Q
    |||||    
T  32223359 taaaa 32223355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 349
Target Start/End: Original strand, 41260214 - 41260276
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgaga 349  Q
    |||| |||||| | ||||||||||||||||||||  ||||||| |||||||| ||||||||||    
T  41260214 ttagaggtgtttgtggtgcggtttggttcggttttgagcataaaaatcatcctaaccgcgaga 41260276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 360 - 440
Target Start/End: Original strand, 29232767 - 29232847
Alignment:
Q  360 tgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcg 440  Q
    ||||||||||||| |||||||||| ||||||||    |||| ||| ||||||||||| |||||||||| || |||| ||||    
T  29232767 tgcggtttggtttagttcggttgacttttaaaataaaatccgaactaaaccaatgcgatttggattggatcggttggtgcg 29232847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 427
Target Start/End: Original strand, 41325090 - 41325172
Alignment:
Q  340 aaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    |||||||||| | | ||| |||||||||| |||  ||||||||| ||||||||     ||| ||||||||||||||||||||||||||    
T  41325090 aaccgcgagataaataagtatgcggtttgatttaattcggttgacttttaaaa-----tccgaaccaaaccaatgcggtttggattgg 41325172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 412
Target Start/End: Complemental strand, 35233356 - 35233314
Alignment:
Q  370 tttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 412  Q
    |||||||||||||  |||||||||||| |||||||||||||||    
T  35233356 tttggttcggttggcttttaaaaagtcgtccaaaccaaaccaa 35233314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 54274112 - 54274066
Alignment:
Q  333 tcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcgg 379  Q
    |||||| |||||| ||| |||||| ||||||||||||||||||||||    
T  54274112 tcatccgaaccgcaagatagaaaatcatgcggtttggtttggttcgg 54274066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 320
Target Start/End: Complemental strand, 34277489 - 34277456
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggttt 320  Q
    |||||||||||||||||||||||||| |||||||    
T  34277489 ttaggggtgttcgcggtgcggtttggatcggttt 34277456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 430
Target Start/End: Original strand, 4688690 - 4688766
Alignment:
Q  359 atgcggtttggtttggttcggttgatttttaaaaagtcat-----ccaaaccaaaccaatgcggtttggattggttc 430  Q
    |||| |||||||| | ||||||||| ||||||||||| ||     |||||||||||||||| ||||| |||||||||    
T  4688690 atgcagtttggttcgattcggttgacttttaaaaagttatcttaaccaaaccaaaccaatgtggttttgattggttc 4688766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 15723945 - 15723989
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    ||||||||||| |||||||||||| |||| || ||||||||||||    
T  15723945 ccaaaccaaactaatgcggtttgggttggatcggttgatgcggtt 15723989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 18319590 - 18319546
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||||||||||||||||| |||| || |||| |||||||    
T  18319590 ccaaaccaaaccaatgcggtttgggttggatcggttggtgcggtt 18319546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 18399091 - 18399135
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||||||||||||||||| |||| || |||| |||||||    
T  18399091 ccaaaccaaaccaatgcggtttgggttggatcggttggtgcggtt 18399135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 23625920 - 23625876
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||| |||||||||||||||||| || |||| |||||||    
T  23625920 ccaaaccaaatcaatgcggtttggattggatcggttggtgcggtt 23625876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 397 - 425
Target Start/End: Original strand, 28147836 - 28147864
Alignment:
Q  397 atccaaaccaaaccaatgcggtttggatt 425  Q
    |||||||||||||||||||||||||||||    
T  28147836 atccaaaccaaaccaatgcggtttggatt 28147864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 42430531 - 42430499
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggttt 320  Q
    ||||||||||||||||||||||||| |||||||    
T  42430531 taggggtgttcgcggtgcggtttggatcggttt 42430499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 368 - 412
Target Start/End: Original strand, 51907085 - 51907129
Alignment:
Q  368 ggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 412  Q
    |||| |||| |||||| |||||||||||||||| |||||||||||    
T  51907085 ggttcggtttggttgacttttaaaaagtcatccgaaccaaaccaa 51907129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 435
Target Start/End: Complemental strand, 54274044 - 54274008
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttg 435  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  54274044 ccaaaccaaaccaatgtggtttggattggttcggttg 54274008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 287 - 601
Target Start/End: Complemental strand, 3006713 - 3006390
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3006713 ttagaggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgattt 3006614  T
Q  387 ttaaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaact 476  Q
    ||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||    
T  3006613 ttaaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaact 3006514  T
Q  477 ctaatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaa 576  Q
    ||||||||||||||||||||||| |||||| ||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3006513 ctaatattgccaactagtaccaagcaattt-aattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaa 3006415  T
Q  577 ataacattacagtaccaaaataata 601  Q
    |||||||||||||||||||||||||    
T  3006414 ataacattacagtaccaaaataata 3006390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 5803386 - 5803062
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  5803386 taggggtgttcgcagtgcggtttggttcgatttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 5803287  T
Q  388 taaaaagtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  5803286 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactc 5803187  T
Q  478 taatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaa 577  Q
    ||||| |||||||||||||||| |||||||||||||||       ||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5803186 taatactgccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaaaa 5803087  T
Q  578 -taacattacagtaccaaaataata 601  Q
     ||||||||||||||||||||||||    
T  5803086 ttaacattacagtaccaaaataata 5803062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 287 - 491
Target Start/End: Original strand, 10661095 - 10661297
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||  ||||||| | ||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  10661095 ttaggggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggttcggttgattt 10661194  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||  |||| || |||||||||||||        ||||||||||| |||||||||    
T  10661195 ttaaaaagtcatccaaaccaaaccaatgcggtttgtattggttcggtttgtgcgatttatcgcgagataaa--aaaatattacattaactgtaatattgc 10661292  T
Q  487 caact 491  Q
    |||||    
T  10661293 caact 10661297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 291 - 491
Target Start/End: Original strand, 44672734 - 44672932
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||| ||||||| ||||||||||||||  ||||||| | ||||||||| ||||||| | |||| ||||||||||||||||||||| |||||||||||    
T  44672734 gggtgtttgcggtgcagtttggttcggttttgagcataaaagtcatccaaatcgcgagataaaaaaacatgcggtttggtttggttcgattgatttttaa 44672833  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaac 490  Q
    ||||||||||||||||||||||||||||||||||||||||  ||  || |||| |||||||||| ||        |||||||||||||||||||||||||    
T  44672834 aaagtcatccaaaccaaaccaatgcggtttggattggttcgatttgtgtggtttatcgcgagatgaa--aaaatattacattaactctaatattgccaac 44672931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 36910471 - 36910270
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||| | |||  ||||||| | ||||| ||||||||||| | ||||||||||||||| |||||||||||||||||||    
T  36910471 taggggtgttcgcggtgcggtttggtttgattttgagcataaaagtcatcaaaaccgcgagataaaaaagcatgcggtttagtttggttcggttgatttt 36910372  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||||||||||||||||||||||||| |||| |||||||||||| |||  ||| ||| |||||||||| ||        ||||||||||||||||||||||    
T  36910371 taaaaagtcatccaaaccaaaccaa-gcggcttggattggttcggtttgtgcagtttatcgcgagattaa-aaaaatattacattaactctaatattgcc 36910274  T
Q  488 aact 491  Q
    ||||    
T  36910273 aact 36910270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 288 - 408
Target Start/End: Original strand, 33068208 - 33068328
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||| ||||||||||||||||||||  ||||||| | ||||||||||||| ||| | ||||||||||||||||||||||||| |||||||||    
T  33068208 taggggtgttcgtggtgcggtttggttcggttttgagcataaaagtcatccaaaccgcaagataaaaaagcatgcggtttggtttggttcagttgatttt 33068307  T
Q  388 taaaaagtcatccaaaccaaa 408  Q
    |||||||||||||||||||||    
T  33068308 taaaaagtcatccaaaccaaa 33068328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 291 - 491
Target Start/End: Original strand, 14549169 - 14549376
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    |||||||||||||| |||||| ||||||||  ||||||| | |||||||||||| |||| | ||||  ||||||||||||||| ||||||||||||||||    
T  14549169 gggtgttcgcggtgtggtttgattcggttttgagcataaaagtcatccaaaccgtgagataaaaaaatatgcggtttggtttgattcggttgatttttaa 14549268  T
Q  391 aaagtcat----------ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaa 480  Q
    ||||||||          |||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||        |||||||||||||||    
T  14549269 aaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaa---aaatattacattaactctaa 14549365  T
Q  481 tattgccaact 491  Q
    |||||||||||    
T  14549366 tattgccaact 14549376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 287 - 487
Target Start/End: Complemental strand, 18170161 - 18169961
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| | ||||||||||||||||||||  | ||||| | ||||| ||||||||||| | |||||| ||||||||||||     ||||||| ||    
T  18170161 ttaggggtgtttgaggtgcggtttggttcggttttgaacataaaagtcatctaaaccgcgagataaaaaagcgtgcggtttggtt-----cggttgagtt 18170067  T
Q  387 ttaaaaagtcatc-----caaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaat 481  Q
    |||||||||||||     ||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||        ||||||||||||||||    
T  18170066 ttaaaaagtcatcaaaaccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaaaaaaaaaattacattaactctaat 18169967  T
Q  482 attgcc 487  Q
     |||||    
T  18169966 gttgcc 18169961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 287 - 457
Target Start/End: Complemental strand, 18633729 - 18633558
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| | ||||||||||||||||||||  | ||||| | ||||| ||||||||||| | |||||| ||||||||||||     ||||||| ||    
T  18633729 ttaggggtgtttgaggtgcggtttggttcggttttgaacataaaagtcatctaaaccgcgagataaaaaagcgtgcggtttggtt-----cggttgagtt 18633635  T
Q  387 ttaaaaagtcatccaaaccaaaccaa------tgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    ||||||||||||| ||||||||||||      |||||||||||||||||| |||  ||||||| |||||||||||||    
T  18633634 ttaaaaagtcatcaaaaccaaaccaaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaa 18633558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 288 - 453
Target Start/End: Original strand, 3681876 - 3682035
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||   ||||||||||||||||||  |  |||| | | ||||||||||||||| | |||| |||||||||||||||||||     || |||    
T  3681876 taggggtgttcgtattgcggtttggttcggttttgaatataaaagttatccaaaccgcgagataaaaaa-catgcggtttggtttggtt-----gacttt 3681969  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgaga 453  Q
    ||||||||||||||||| |||||||||||| ||||||||||||  ||  ||||||| |||||||||    
T  3681970 taaaaagtcatccaaactaaaccaatgcggcttggattggttcgatttgtgcggtttatcgcgaga 3682035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 292 - 403
Target Start/End: Complemental strand, 6200989 - 6200878
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    |||||||||||| ||| ||||||||||||  ||||||| | | |||||||| |||||| | |||| |||||||||| ||||||||  |||||||||||||    
T  6200989 ggtgttcgcggtacggcttggttcggttttgagcataaaagtaatccaaactgcgagataaaaaaacatgcggtttagtttggttaagttgatttttaaa 6200890  T
Q  392 aagtcatccaaa 403  Q
    ||||||||||||    
T  6200889 aagtcatccaaa 6200878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 290 - 376
Target Start/End: Original strand, 30392083 - 30392169
Alignment:
Q  290 ggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggtt 376  Q
    |||||||| ||||||||||  ||||||||||  ||||||| | ||||||||||||||||| | ||||||||||||||||||||||||    
T  30392083 ggggtgtttgcggtgcggtgcggttcggttttgagcataaaagtcatccaaaccgcgagataaaaaagcatgcggtttggtttggtt 30392169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 44336713 - 44336819
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaag-catgcggtttggtttggttcggttgatt 385  Q
    ||||| ||||||||||||||||||||||||||||  ||  ||| | |||||| |||||| ||| | ||||  |||||||||||||||||||||||||| |    
T  44336713 ttaggagtgttcgcggtgcggtttggttcggttttgagtttaaaagtcatccgaaccgcaagataaaaaaaacatgcggtttggtttggttcggttgact 44336812  T
Q  386 tttaaaa 392  Q
    |||||||    
T  44336813 tttaaaa 44336819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 287 - 443
Target Start/End: Complemental strand, 28073332 - 28073176
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||||||||||||||||| | || || |||  ||| | |||||  |||||| | | | |||| |||| ||||| ||||||||| ||||| ||    
T  28073332 ttaggggtgttcgcggtgcggtttggcttgggtttaaggctaaaagtcatctgaaccgcaatataaaaaaacatgtggtttagtttggttcagttgactt 28073233  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||| |  | || ||||||||||||| |||||||||| ||| | ||| |||||||    
T  28073232 ttaaaatgaaaaccgaaccaaaccaatgtggtttggattagtttaattgttgcggtt 28073176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 7428504 - 7428434
Alignment:
Q  357 gcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    ||||||||||||||||||||||||||| ||||||||    || | |||||||| |||||||||||||||||    
T  7428504 gcatgcggtttggtttggttcggttgacttttaaaataaaattcgaaccaaactaatgcggtttggattgg 7428434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 373 - 435
Target Start/End: Complemental strand, 38926481 - 38926419
Alignment:
Q  373 ggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttg 435  Q
    ||||||||||| ||||||||||||||   ||||||||||||| ||||||||||||||| ||||    
T  38926481 ggttcggttgacttttaaaaagtcatttgaaccaaaccaatgtggtttggattggttcggttg 38926419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 443
Target Start/End: Original strand, 40436378 - 40436539
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgaga-gagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    |||||||||||||||||||||||||||||||||  ||  ||| | | |||||||  || |||  | |||| ||||| |||||||||||||||||||| ||    
T  40436378 taggggtgttcgcggtgcggtttggttcggttttgagggtaaaagtgatccaaattgcaagataaaaaaaacatgccgtttggtttggttcggttgactt 40436477  T
Q  387 t-----taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |     |||||  | | || ||||||||||||||||||||| |||| || |||| |||||||    
T  40436478 taaaaataaaatttgaaccgaaccaaaccaatgcggtttgggttggatcggttggtgcggtt 40436539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 288 - 381
Target Start/End: Complemental strand, 12883870 - 12883777
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggtt 381  Q
    |||||||||||||||||||||||||||||||||  ||  ||| | |||| | |||| | | | | | ||| |||||||||||||||||||||||    
T  12883870 taggggtgttcgcggtgcggtttggttcggttttgaggttaaaagtcattcgaaccacaaaataaataagtatgcggtttggtttggttcggtt 12883777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 392
Target Start/End: Original strand, 11218892 - 11218996
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||| |||||||||||||||| |||  ||  ||| | |||||| || ||| ||| | | ||| ||||| |||||||||||| |||||| |||    
T  11218892 taggggtgttcggggtgcggtttggttcgattttgaggctaaaagtcatccgaaacgcaagataaataagtatgcgatttggtttggtttggttgacttt 11218991  T
Q  388 taaaa 392  Q
    |||||    
T  11218992 taaaa 11218996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 363 - 427
Target Start/End: Complemental strand, 12660321 - 12660257
Alignment:
Q  363 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattgg 427  Q
    ||||||||||||||||||||| ||| ||||    |||| |||||||| |||||||||||||||||    
T  12660321 ggtttggtttggttcggttgagtttaaaaataaaatccgaaccaaacaaatgcggtttggattgg 12660257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 12193484 - 12193443
Alignment:
Q  402 aaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    ||||||| |||||||||||||||||| || ||||||||||||    
T  12193484 aaccaaatcaatgcggtttggattggatcggttgatgcggtt 12193443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 402 - 443
Target Start/End: Complemental strand, 12437912 - 12437871
Alignment:
Q  402 aaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    ||||||| |||||||||||||||||| || ||||||||||||    
T  12437912 aaccaaatcaatgcggtttggattggatcggttgatgcggtt 12437871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 392
Target Start/End: Complemental strand, 24682227 - 24682126
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||||| ||||||| ||||||||||||  ||  ||| | |||||| |||||| ||| | | ||| |||| |||||||||| |||| |||| ||||||    
T  24682227 gggtgttcgtggtgcggcttggttcggttttgaggctaaaattcatccgaaccgcaagataaataagtatgcagtttggtttgattcgattgacttttaa 24682128  T
Q  391 aa 392  Q
    ||    
T  24682127 aa 24682126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 412
Target Start/End: Complemental strand, 31497664 - 31497615
Alignment:
Q  363 ggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaa 412  Q
    ||||||||||||||||||||| ||| ||||   |||||||||||||||||    
T  31497664 ggtttggtttggttcggttgactttaaaaataacatccaaaccaaaccaa 31497615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 9012861 - 9012817
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||||||||||||||||| |||| || |||| |||||||    
T  9012861 ccaaaccaaaccaatgcggtttgggttggatcggttggtgcggtt 9012817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 286 - 609
Target Start/End: Original strand, 20493689 - 20494025
Alignment:
Q  286 tttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  20493689 tttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagaaaaaaacatgcggtttggtttggttcggttgatt 20493788  T
Q  386 tttaaaaagtcat----------ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnntt-acattaa 474  Q
    |||||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||       || |||||||    
T  20493789 tttaaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatctcgagataaataaaaaaattaacattaa 20493888  T
Q  475 ctctaatattgccaactagtaccaaacaattttaattatt--cnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatc 572  Q
    |||||||||||||||||| |||||||||||||||||||||          ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  20493889 ctctaatattgccaactaataccaaacaattttaattattacaaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatc 20493988  T
Q  573 taaaataacattacagtaccaaaataatagctggata 609  Q
    |||||||||||||||||||||||||||||||||||||    
T  20493989 taaaataacattacagtaccaaaataatagctggata 20494025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 288 - 601
Target Start/End: Original strand, 8211221 - 8211546
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8211221 taggggtgttcgcggtgcggtttggtttggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcggtttggtttggttcggttgatttt 8211320  T
Q  388 taaaaagtcat----------ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||    
T  8211321 taaaaagtcatccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaattacattaactc 8211420  T
Q  478 taatattgccaactagtaccaaacaattttaattatt--cnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaa 575  Q
    |||||||||||||||||||||| ||||||||||||||          ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  8211421 taatattgccaactagtaccaagcaattttaattattaaaaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatctaa 8211520  T
Q  576 aataacattacagtaccaaaataata 601  Q
    ||||||| |||| |||||||||||||    
T  8211521 aataacactacaataccaaaataata 8211546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 288 - 601
Target Start/End: Complemental strand, 5155483 - 5155150
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  5155483 taggggtgttcgcggtgcggtttggtttggtttcaagcataataatcatccaaaccgcgagagaaaaaagcatgcgatttggtttggttcggttgatttt 5155384  T
Q  388 taaaaagtcatccaaaccaaa--------------------ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnntt 467  Q
    |||||||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||       ||    
T  5155383 taaaaagtcatccaaaccaaaccaaaccaaaccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaataaaaaaatt 5155284  T
Q  468 acattaactctaatattgccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttat 567  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||||        ||||||| |||||||||||||||||||||||||||||||||||||    
T  5155283 acattaactctaatattaccaactagtaccaagcaattttaattattaaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttat 5155184  T
Q  568 ttatctaaaataacattacagtaccaaaataata 601  Q
    ||||||||||||||| |||| |||||||||||||    
T  5155183 ttatctaaaataacactacaataccaaaataata 5155150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 51252555 - 51252354
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||| |||  ||||||| | ||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||    
T  51252555 taggggtgttcgcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtggtttggtttggttgggttgatttt 51252456  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgcc 487  Q
    ||||||||||||||||||||| |||||||| ||| |||||||| |||  ||||||| ||| |||||||||        ||||||||||||||||||||||    
T  51252455 taaaaagtcatccaaaccaaatcaatgcggcttgaattggttcggtttgtgcggtttatcacgagataaa--aagatattacattaactctaatattgcc 51252358  T
Q  488 aact 491  Q
    ||||    
T  51252357 aact 51252354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 287 - 491
Target Start/End: Original strand, 33474389 - 33474590
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||| |||||  ||||||||| |||  |||| || |||||||||||| | |||| | ||||||||||||||| ||||||||||||||||||    
T  33474389 ttaggggtgttcgtggtgctatttggttcgattttgagcaaaaaaatcatccaaactgtgagataaaaaagcatgcggtttagtttggttcggttgattt 33474488  T
Q  387 ttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgc 486  Q
    | |||||||||||||||||||||||||||||||||||||||||| |||  ||||||| |||||||||||||        |||||||||||||||||||||    
T  33474489 taaaaaagtcatccaaaccaaaccaatgcggtttggattggttcggtttgtgcggtttatcgcgagataaa---aaaaattacattaactctaatattgc 33474585  T
Q  487 caact 491  Q
    |||||    
T  33474586 caact 33474590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 291 - 491
Target Start/End: Complemental strand, 1161879 - 1161682
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||| ||| ||||||||||||||||||  |||| || | |||||| |||||||||| | ||||||||| |||||||||||||| |||||||||||||    
T  1161879 gggtgtttgcgatgcggtttggttcggttttgagcagaaaagtcatccgaaccgcgagataaaaaagcatgtggtttggtttggtttggttgatttttaa 1161780  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaac 490  Q
    ||||||||||||||||||||||||| | || ||||||||| |||  ||||||| |||| ||||||||        |||||||||||||||||||||||||    
T  1161779 aaagtcatccaaaccaaaccaatgcagcttcgattggttcggtttgtgcggtttatcgtgagataaa---aaatattacattaactctaatattgccaac 1161683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 286 - 412
Target Start/End: Complemental strand, 16529642 - 16529516
Alignment:
Q  286 tttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatt 385  Q
    |||||||||||||||||||||||||||||||||||  ||||||| | |||||||||| |||||| | |||||||||| ||||||||||||||||||||||    
T  16529642 tttaggggtgttcgcggtgcggtttggttcggttttgagcataaaagtcatccaaactgcgagataaaaaagcatgccgtttggtttggttcggttgatt 16529543  T
Q  386 tttaaaaagtcatccaaaccaaaccaa 412  Q
    ||||||||||||| |||||||||||||    
T  16529542 tttaaaaagtcattcaaaccaaaccaa 16529516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 288 - 457
Target Start/End: Complemental strand, 42789743 - 42789579
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||||||||||||||||| || ||| |||||||| | |||| |||||||||||| | |||||||||| ||||||||     | |||||||||    
T  42789743 taggggtgttcgcggtgcggtttggtacgattttaagcataaaagtcattcaaaccgcgagataaaaaagcatgcagtttggtt-----cagttgatttt 42789649  T
Q  388 taaaaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    ||||||||||||||||||||| |||||||| |||||| ||||| |||||||  ||| |||||||||||||    
T  42789648 taaaaagtcatccaaaccaaatcaatgcggcttggatcggttcggttgatgttgtttatcgcgagataaa 42789579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 32953982 - 32954104
Alignment:
Q  289 aggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttt 388  Q
    ||||||||||| ||||||||||||||||||||  | ||||| | |||||||||||  |||| | ||||||||||||||||||||||||||||||||||||    
T  32953982 aggggtgttcgtggtgcggtttggttcggttttgaacataaaagtcatccaaacct-gagataaaaaagcatgcggtttggtttggttcggttgattttt 32954080  T
Q  389 aaaaagtcatccaaaccaaaccaa 412  Q
    ||||||||||||||||||||||||    
T  32954081 aaaaagtcatccaaaccaaaccaa 32954104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 486 - 601
Target Start/End: Complemental strand, 29708043 - 29707928
Alignment:
Q  486 ccaactagtaccaaacaattttaattattcnnnnnnngaacttggagttccaaaatagcattacaataccaataaaagttatttatctaaaataacatta 585  Q
    |||||||||||||| |||||||||||||||       ||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29708043 ccaactagtaccaagcaattttaattattcaaaaaaagaacttgaagttccaaaatagcattacaataccaataaaagttatttatataaaataacatta 29707944  T
Q  586 cagtaccaaaataata 601  Q
    || |||||||||||||    
T  29707943 caataccaaaataata 29707928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 299 - 457
Target Start/End: Original strand, 29388986 - 29389149
Alignment:
Q  299 gcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcat 398  Q
    |||||||||||||||||| |||  |||| || | |||||||||||| |||| | |||||||||||||||| ||||||| | |||||||||||||||||||    
T  29388986 gcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgtgagataaaaaagcatgcggtttgatttggtttgattgatttttaaaaagtcat 29389085  T
Q  399 ccaaaccaaac-----caatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    |||||||||||     ||||||||||||||||||||| ||| |||| ||| ||||| |||||||    
T  29389086 ccaaaccaaaccaaatcaatgcggtttggattggttcggtttatgcagtttatcgcaagataaa 29389149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 39256776 - 39256570
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||||| ||||||||||||||| ||||  |||| || | |||| | ||| |||||| | ||||||||||||||| |||||||||||||||||||    
T  39256776 taggggtgttcgtggtgcggtttggttctgttttgagcacaaaagtcattcgaactgcgagataaaaaagcatgcggtttagtttggttcggttgatttt 39256677  T
Q  388 taaaaagtcatccaaaccaaa-----ccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaata 482  Q
    |||||||||||||||||||||     ||||| ||| |||||||||||| |||  ||||||| |||| | ||||||        |||||||||||||||||    
T  39256676 taaaaagtcatccaaaccaaaccaaaccaatacggcttggattggttcggtttgtgcggtttatcgtgtgataaa--aaaatattacattaactctaata 39256579  T
Q  483 ttgccaact 491  Q
    |||||||||    
T  39256578 ttgccaact 39256570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 288 - 491
Target Start/End: Original strand, 45691739 - 45691945
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaag-catgcggtttggtttggttcggttgattt 386  Q
    |||||| ||| ||||||||||||| ||| ||||  |||| ||   ||||||||||||||| | | ||||  |||||||||||||||||||||||||||||    
T  45691739 taggggcgtttgcggtgcggtttgattcagttttgagcaaaaatgtcatccaaaccgcgaaataaaaaaaacatgcggtttggtttggttcggttgattt 45691838  T
Q  387 ttaaaaagtcatcc-----aaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaat 481  Q
    ||||||||||||||     ||||||||| |||||||||||||||||||| |||  ||||||| |||| ||||||||        ||||||||||||||||    
T  45691839 ttaaaaagtcatccaaactaaaccaaactaatgcggtttggattggttcggtttgtgcggtttatcgtgagataaa---aaatattacattaactctaat 45691935  T
Q  482 attgccaact 491  Q
    |||| |||||    
T  45691936 attggcaact 45691945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 301 - 491
Target Start/End: Original strand, 44918503 - 44918690
Alignment:
Q  301 ggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatcc 400  Q
    |||||||||||||||| |||  ||||||| | ||| |||||| || ||| | ||||||||||||||     |||||||||||||||||||||||||||||    
T  44918503 ggtgcggtttggttcgattttgagcataaaagtcacccaaactgcaagataaaaaagcatgcggtt-----tggttcggttgatttttaaaaagtcatcc 44918597  T
Q  401 -----aaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaact 491  Q
         ||||||||||||| |||||||||||||||| |||  ||||||| ||| |||||||||        ||||||||||||||||||||||||||    
T  44918598 aaacgaaaccaaaccaatacggtttggattggttcggtttgtgcggtttatcacgagataaa---aaatattacattaactctaatattgccaact 44918690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 288 - 412
Target Start/End: Complemental strand, 33910922 - 33910797
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||| ||||| |||||||||||||| | ||  ||||||| | |||||||||  |||||| | ||||||||| |||||| ||||||||||||||||||    
T  33910922 taggggtattcgcagtgcggtttggttcaggtttgagcataaaagtcatccaaaatgcgagataaaaaagcatgtggtttgatttggttcggttgatttt 33910823  T
Q  388 taaaaagtcatcc-aaaccaaaccaa 412  Q
    |||||| |||||| ||||||||||||    
T  33910822 taaaaattcatccaaaaccaaaccaa 33910797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 36203583 - 36203479
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||| |||||||||||||  ||  ||| | ||||||||||||| ||| | |||||||||||||||| |||||||||||||| |||    
T  36203583 taggggtgttcgcggtgcgatttggttcggttttgaggttaaaagtcatccaaaccgcaagataaaaaagcatgcggtttgatttggttcggttgacttt 36203484  T
Q  388 taaaa 392  Q
    |||||    
T  36203483 taaaa 36203479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 293 - 457
Target Start/End: Original strand, 11898958 - 11899127
Alignment:
Q  293 gtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaa 392  Q
    ||||||||||||||||||| ||||||||  |||| || | |||||||||||||| || | |||| ||||     ||||||||||||||||||||||||||    
T  11898958 gtgttcgcggtgcggtttgattcggttttgagcaaaaaagtcatccaaaccgcgcgataaaaaaacatg-----tggtttggttcggttgatttttaaaa 11899052  T
Q  393 agtcatccaaaccaaaccaa----------tgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    | ||||||||||||||||||          | |||||||||||||||| |||  ||||||| |||||||||||||    
T  11899053 aatcatccaaaccaaaccaaactaaaccaatacggtttggattggttcggtttgtgcggtttatcgcgagataaa 11899127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 291 - 440
Target Start/End: Complemental strand, 27507628 - 27507479
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||||||||||||||||||||||||||  || |||| | |||||| |||||| ||| | | ||| ||||  |||||||| |||||||||| ||||||    
T  27507628 gggtgttcgcggtgcggtttggttcggttttgagaataaaagtcatccgaaccgcaagataaataagtatgcaatttggtttagttcggttgacttttaa 27507529  T
Q  391 aaagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcg 440  Q
    ||    ||||||| ||||||||||  ||||||||||| ||||||| ||||    
T  27507528 aataaaatccaaatcaaaccaatgatgtttggattggatcagttggtgcg 27507479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 284 - 392
Target Start/End: Complemental strand, 21685686 - 21685578
Alignment:
Q  284 attttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttga 383  Q
    |||||||||||||| ||||||| |||||||||||||| |||  ||| | |||||  |||||| ||| | ||| ||||||||||||||||||||| |||||    
T  21685686 attttaggggtgtttgcggtgcagtttggttcggttttaaggctaaaagtcatctgaaccgcaagatacaaatgcatgcggtttggtttggttcagttga 21685587  T
Q  384 tttttaaaa 392  Q
     ||||||||    
T  21685586 cttttaaaa 21685578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 35980528 - 35980423
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||| ||||||||||||||||||||||  ||  ||| | |||||| |||||| ||  | ||||||||| |||||||||| ||||| |||| ||    
T  35980528 ttaggggtgtttgcggtgcggtttggttcggttttgaggctaaaagtcatccgaaccgcaaggtaaaaaagcatgtggtttggttttgttcgattgactt 35980429  T
Q  387 ttaaaa 392  Q
    ||||||    
T  35980428 ttaaaa 35980423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 399 - 491
Target Start/End: Original strand, 32954106 - 32954197
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaact 491  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||| |||| ||||||||        ||||||||||||||||||||||||||    
T  32954106 ccaaaccaaaccaatgcggcttggattggttcggtttgtgcggtttatcgtgagataaa-aaaaatattacattaactctaatattgccaact 32954197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 287 - 392
Target Start/End: Original strand, 12973501 - 12973606
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcgg-tttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatt 385  Q
    ||||||||||||||||||||||||||||||| ||| |||| | | | |||||| |||||| ||| | | ||  |||||||||||||||||| ||||||||    
T  12973501 ttaggggtgttcgcggtgcggtttggttcggttttgaagc-tgaaagtcatccgaaccgcaagataaataaatatgcggtttggtttggtttggttgatt 12973599  T
Q  386 tttaaaa 392  Q
    || ||||    
T  12973600 ttgaaaa 12973606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 333 - 443
Target Start/End: Complemental strand, 16537932 - 16537822
Alignment:
Q  333 tcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaaaagtcatccaaaccaaaccaatgcggtttggattggttcag 432  Q
    ||||| ||||||| ||| | |||| ||||||||||| ||||||| |||| | ||||||||    |||| |||||||||||||| |||||| |||| || |    
T  16537932 tcatctaaaccgcaagataaaaaaacatgcggtttgatttggtttggttcacttttaaaataaaatccgaaccaaaccaatgcagtttgggttggatctg 16537833  T
Q  433 ttgatgcggtt 443  Q
    |||||||||||    
T  16537832 ttgatgcggtt 16537822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 401 - 491
Target Start/End: Complemental strand, 24911076 - 24910987
Alignment:
Q  401 aaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactctaatattgccaact 491  Q
    ||||||||||||||| |||||||||||||| |||  ||||||| || ||||||||||        ||||||||||||||||||||||||||    
T  24911076 aaaccaaaccaatgcagtttggattggttcggtttgtgcggtttattgcgagataaa-aaaaatattacattaactctaatattgccaact 24910987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 287 - 392
Target Start/End: Complemental strand, 40095562 - 40095457
Alignment:
Q  287 ttaggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattt 386  Q
    ||||||||||||||||||||||||||||||||||  ||  ||| | | |||| |||||| ||| | | ||  ||||||||||| ||| ||||||| ||||    
T  40095562 ttaggggtgttcgcggtgcggtttggttcggttttgaggttaaaagttatccgaaccgcaagataaataaatatgcggtttggcttgtttcggtttattt 40095463  T
Q  387 ttaaaa 392  Q
    ||||||    
T  40095462 ttaaaa 40095457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 399 - 435
Target Start/End: Original strand, 33769936 - 33769972
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttg 435  Q
    |||||||||||||||||||||||||||||||||||||    
T  33769936 ccaaaccaaaccaatgcggtttggattggttcagttg 33769972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 292 - 443
Target Start/End: Original strand, 34914080 - 34914231
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    |||||||| ||||| |||||||||| |||  ||   || | |||||||||| |||| | | ||||| |||| |||||||||| || |||||| |||||||    
T  34914080 ggtgttcgtggtgcagtttggttcgattttgaggtgaaaagtcatccaaactgcgaaataaaaaagtatgcagtttggtttgctttggttgacttttaaa 34914179  T
Q  392 aagtcatccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |    || | ||||||||||||| |||||||||||| || |||| |||||||    
T  34914180 ataaaattcgaaccaaaccaatgtggtttggattggatcggttgttgcggtt 34914231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 392
Target Start/End: Complemental strand, 32910506 - 32910405
Alignment:
Q  291 gggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaa 390  Q
    ||||||| |||||| |  ||||||||||||  || |||| | |||||||||| || ||| | |||| ||||| |||||||||||||||||||| ||| ||    
T  32910506 gggtgtttgcggtgtgtgttggttcggttttgaggataaaagtcatccaaactgcaagataaaaaaacatgcagtttggtttggttcggttgactttaaa 32910407  T
Q  391 aa 392  Q
    ||    
T  32910406 aa 32910405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 288 - 392
Target Start/End: Complemental strand, 8165691 - 8165587
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| |||||||||||| |||| ||||  |   ||| |||||||| ||||||  || | | ||||||||||||||||| ||||||||||| |||    
T  8165691 taggggtgtttgcggtgcggtttagttcagttttgaaggtaaaaatcatccgaaccgcaggataaagaagcatgcggtttggttcggttcggttgacttt 8165592  T
Q  388 taaaa 392  Q
     ||||    
T  8165591 aaaaa 8165587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 444
Target Start/End: Complemental strand, 26345075 - 26345032
Alignment:
Q  401 aaaccaaaccaatgcggtttggattggttcagttgatgcggtta 444  Q
    ||||||||||||||||||||||||||| || |||| ||||||||    
T  26345075 aaaccaaaccaatgcggtttggattggatcggttggtgcggtta 26345032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 399 - 457
Target Start/End: Complemental strand, 16529519 - 16529461
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    ||||||||||||||||||| ||| |||||||| |||  ||||||| ||||| |||||||    
T  16529519 ccaaaccaaaccaatgcggcttgaattggttcggtttgtgcggtttatcgcaagataaa 16529461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 288 - 381
Target Start/End: Original strand, 6248019 - 6248112
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggtt 381  Q
    ||||||||||||| |||||||||| || | |||  ||  ||| | ||||||||||||| ||| | | ||| |||||||||||||||||| ||||    
T  6248019 taggggtgttcgcagtgcggtttgatttgattttgagactaaaagtcatccaaaccgcaagaaaaataagtatgcggtttggtttggtttggtt 6248112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 11074418 - 11074374
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||| |||||||||||||||||| || |||||| |||||    
T  11074418 ccaaaccaaatcaatgcggtttggattggatcggttgatacggtt 11074374  T

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Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 288 - 316
Target Start/End: Complemental strand, 11074538 - 11074510
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcg 316  Q
    |||||||||||||||||||||||||||||    
T  11074538 taggggtgttcgcggtgcggtttggttcg 11074510  T

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Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 17651815 - 17651859
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||||||||||||||||| |||| |  ||||||||||||    
T  17651815 ccaaaccaaaccaatgcggtttggtttggattggttgatgcggtt 17651859  T

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Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 405 - 457
Target Start/End: Complemental strand, 33910794 - 33910742
Alignment:
Q  405 caaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    |||||||||||||||| ||||||||| ||| |||||||| |||  ||||||||    
T  33910794 caaaccaatgcggttttgattggttcggtttatgcggtttatcatgagataaa 33910742  T

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Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 40095440 - 40095396
Alignment:
Q  399 ccaaaccaaaccaatgcggtttggattggttcagttgatgcggtt 443  Q
    |||||||||||||||| |||||||||||| || |||| |||||||    
T  40095440 ccaaaccaaaccaatgtggtttggattggatcggttggtgcggtt 40095396  T

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Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 292 - 392
Target Start/End: Original strand, 52828769 - 52828868
Alignment:
Q  292 ggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttttaaa 391  Q
    ||||||||||||  ||||||||||||||| |||  |||   |||||  |||||| ||| |  ||||||||| ||||||||||| |||||||| |||||||    
T  52828769 ggtgttcgcggtttggtttggttcggttttaaggttaaaggtcatctgaaccgcaagataacaaagcatgctgtttggtttgg-tcggttgacttttaaa 52828867  T

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Target: scaffold0059 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 288 - 491
Target Start/End: Complemental strand, 69680 - 69469
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||| |||  ||||||| | ||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  69680 taggggtgttcgcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcgagataaaaaagcatgtggtttggtttggttcggttgatttt 69581  T
Q  388 taaaaagtcatccaaaccaaac----------caatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    ||||||||||||||||||||||          ||||| || |||||||||||| ||| |||||||| |||||||||||||        ||| ||||||||    
T  69580 taaaaagtcatccaaaccaaaccaaaccaaatcaatgtggcttggattggttcggtttatgcggtttatcgcgagataaa--aaaatattatattaactc 69483  T
Q  478 taatattgccaact 491  Q
    ||||||||||||||    
T  69482 taatattgccaact 69469  T

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Target: scaffold0013 (Bit Score: 83; Significance: 5e-39; HSPs: 2)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 288 - 500
Target Start/End: Original strand, 128579 - 128799
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    |||||||||| |||||||||||||||||| |||  ||||||| | ||||||||||||| ||| | ||||||||| ||||||||||||||| |||||||||    
T  128579 taggggtgtttgcggtgcggtttggttcgattttgagcataaaagtcatccaaaccgcaagataaaaaagcatgtggtttggtttggttctgttgatttt 128678  T
Q  388 taaaaagtcat----------ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaatnnnnnnnttacattaactc 477  Q
    |||||||||||          |||||||||| |||||||| |||||||||||| |||  ||||||| |||||||||||||        ||||||||||||    
T  128679 taaaaagtcatccaaaccgaaccaaaccaaatcaatgcggcttggattggttcggtttgtgcggtttatcgcgagataaa--aaaatattacattaactc 128776  T
Q  478 taatattgccaactagtaccaaa 500  Q
    |||||||||||||| ||| ||||    
T  128777 taatattgccaacttgtaacaaa 128799  T

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Target: scaffold0013; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 288 - 412
Target Start/End: Original strand, 105972 - 106096
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgatttt 387  Q
    ||||||||||||||||||||||||||||| |||  |||| || | ||||||||||||| ||| | ||||||||| |||||||||||||||||||||||||    
T  105972 taggggtgttcgcggtgcggtttggttcgattttgagcaaaaaagtcatccaaaccgcaagataaaaaagcatgtggtttggtttggttcggttgatttt 106071  T
Q  388 taaaaagtcatccaaaccaaaccaa 412  Q
    ||||| |||||||||||| ||||||    
T  106072 taaaatgtcatccaaaccgaaccaa 106096  T

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Target: scaffold0029 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 288 - 457
Target Start/End: Complemental strand, 40725 - 40541
Alignment:
Q  288 taggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggttt----------ggttc 377  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||| | |||  |||||||||||||||          |||||    
T  40725 taggggtgttcgcggtgcggtttggttcggttttgagcataatagtcatccaaaccgtgagataaaaactcatgcggtttggtttggtttggtttggttc 40626  T
Q  378 ggttgatttttaaaaagtcat-----ccaaaccaaaccaatgcggtttggattggttcagttgatgcggttaatcgcgagataaa 457  Q
    |||||||||||||||||||||     ||||||||||||||||||||||||||||||||  |   ||||||| |||||||||||||    
T  40625 ggttgatttttaaaaagtcatccaaaccaaaccaaaccaatgcggtttggattggttcgatatgtgcggtttatcgcgagataaa 40541  T

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Target: scaffold0204 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 289 - 412
Target Start/End: Original strand, 25807 - 25929
Alignment:
Q  289 aggggtgttcgcggtgcggtttggttcggtttcaagcataataatcatccaaaccgcgagagagaaaagcatgcggtttggtttggttcggttgattttt 388  Q
    |||||| || ||||||| |||||||||||||| |||  ||| | |||||| |||||  ||| | |||| ||||| |||||||||||||||||||| ||||    
T  25807 aggggtatttgcggtgcagtttggttcggttttaaggttaaaagtcatccgaaccgtaagataaaaaa-catgcagtttggtttggttcggttgactttt 25905  T
Q  389 aaaaagtcatccaaaccaaaccaa 412  Q
    ||||    ||||||||||||||||    
T  25906 aaaataaaatccaaaccaaaccaa 25929  T

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