View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_high_50 (Length: 255)
Name: NF18704_high_50
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_50 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 128 - 238
Target Start/End: Complemental strand, 3684672 - 3684562
Alignment:
| Q |
128 |
tcctaccacactcctagtgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataagcaagcagactcgaacaa |
227 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| || |
|
|
| T |
3684672 |
tcctaccacactcctattgcccaaaatcaaaggaagaatggatcaagcatactccaccagagcgaagagacacaagtgataaggaagcaggttcgaaaaa |
3684573 |
T |
|
| Q |
228 |
ccccacttaaa |
238 |
Q |
| |
|
||||||||||| |
|
|
| T |
3684572 |
ccccacttaaa |
3684562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 3684790 - 3684740
Alignment:
| Q |
9 |
ccaagaaaataaaaacaccagaacaccaatagaaaagtcacaccaaacaac |
59 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3684790 |
ccaaaaaaataaaaacaccagaacaccaatagaaaagtcacaccaaacaac |
3684740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University