View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_58 (Length: 245)
Name: NF18704_high_58
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_58 |
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| [»] chr1 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 46921315 - 46921073
Alignment:
| Q |
3 |
cagcacagagcaccatgaaacaacattcttcctattaccaattctactaaaaaccatttcagcagatacaatgtccccacattttccatagaaatcaata |
102 |
Q |
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| T |
46921315 |
cagcatagagcaccatgaaacaacattcttcctattaccaattctactaaaaaccatttcagcagatacaatgtccccacattttccatagaaatcaata |
46921216 |
T |
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| Q |
103 |
agcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcat |
202 |
Q |
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| T |
46921215 |
agcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcat |
46921116 |
T |
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| Q |
203 |
tcaaaaacgcacaaaatgtaatcgaattcggctctccatgcac |
245 |
Q |
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| T |
46921115 |
tcaaaaacgcacaaaatgtaatcgaattcggctctccatgcac |
46921073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 218
Target Start/End: Original strand, 46891371 - 46891584
Alignment:
| Q |
4 |
agcacagagcaccatgaaacaacattcttcctattaccaattctactaaaaaccattt-cagcagatacaatgtccccacattttccatagaaatcaata |
102 |
Q |
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| T |
46891371 |
agcatagagcaccaaaaaaaaacattcctcttactaccaattttgctaaa--ccattttcagcagatacaatgtccccacatttcccacaaaaactaata |
46891468 |
T |
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| Q |
103 |
agcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcat |
202 |
Q |
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| T |
46891469 |
agcccattcgcaacagaaacatcctctttatatccaaaatgaattataaatgaatgtaaccgtcacccgtgattcaatctcaacaagtcaacacaggcat |
46891568 |
T |
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| Q |
203 |
tcaaaaacgcacaaaa |
218 |
Q |
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| T |
46891569 |
tcaggaccgcacaaaa |
46891584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 245
Target Start/End: Complemental strand, 38311472 - 38311230
Alignment:
| Q |
3 |
cagcacagagcaccatgaaacaacattcttcctattaccaattctactaaaaaccatttcagcagatacaatgtccccacattttccatagaaatcaata |
102 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38311472 |
cagcatagagcaccatgaaacaacattcttcctattaccaattctattaaaaaccatttcagcagatacaatgtccccacattttccatagaaatcaata |
38311373 |
T |
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| Q |
103 |
agcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcatcatatcaacgcaagcat |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38311372 |
agcccattcgcaacagaaacatcctctttatatccacaccgaacaataaaagcatgtaactgacgcccgagattcaatctcaccatatcaacgcaagcat |
38311273 |
T |
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| Q |
203 |
tcaaaaacgcacaaaatgtaatcgaattcggctctccatgcac |
245 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
38311272 |
tcaaaaatgcacaaaatgtaatcgaattcggctctccatgcac |
38311230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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