View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_60 (Length: 243)
Name: NF18704_high_60
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_60 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 36100347 - 36100570
Alignment:
| Q |
4 |
agcaacatcaccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaaga |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36100347 |
agcaacatcaccaaaagctttagcaattataactccaaaagatgattctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaaga |
36100446 |
T |
|
| Q |
104 |
atccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatt |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36100447 |
atccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgccttatgttataattgacttgcttcacctcaattcagttgaagtcaatt |
36100546 |
T |
|
| Q |
204 |
tacaagatgaaacaacatgggttg |
227 |
Q |
| |
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|||||||||||||||||||||||| |
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|
| T |
36100547 |
tacaagatgaaacaacatgggttg |
36100570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 6 - 227
Target Start/End: Original strand, 21482340 - 21482561
Alignment:
| Q |
6 |
caacatcaccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaat |
105 |
Q |
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||||| |||||||| |||| |||||||||||| ||||||||| ||||||||||||| |||||||| |||| ||||| ||||| | || | ||||| |
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| T |
21482340 |
caacaacaccaaaacctttggcaattataactgcaaaagatgattctcatgtccaagcaacaattcaatgcctcaaaagtaacaaaattcagatcagaat |
21482439 |
T |
|
| Q |
106 |
ccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaattta |
205 |
Q |
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|||||||||||||||||| | |||||| |||||||| ||||||||||| ||| ||||||||||||||||||||| |||||||||||||| ||||||||| |
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| T |
21482440 |
ccgaagtggcggccacgactttgaaggtttctcatatgtatcagacgtgccttttgttataattgacttgcttcatctcaattcagttgatgtcaattta |
21482539 |
T |
|
| Q |
206 |
caagatgaaacaacatgggttg |
227 |
Q |
| |
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||||| |||||| ||||||||| |
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| T |
21482540 |
caagaagaaacagcatgggttg |
21482561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 34972022 - 34971816
Alignment:
| Q |
21 |
ctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggcggcca |
120 |
Q |
| |
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|||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||| | || ||||||| |||||||| || || |
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| T |
34972022 |
ctttggcaattataactgcaaaagatgtttctcatgtccaagcaacaattaaatgtgccaaaagtaacaacattcagataagaattcgaagtggagggca |
34971923 |
T |
|
| Q |
121 |
cgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaacaaca |
220 |
Q |
| |
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|| |||||||| || ||||| |||||||| ||| ||| | || || ||||| || ||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
34971922 |
tgactatgaaggtttatcatatttatcagatgtgccttttattgtacttgacatgtttcacctcaattcagttgatgtcaatttacaagaatcaacaaca |
34971823 |
T |
|
| Q |
221 |
tgggttg |
227 |
Q |
| |
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||||||| |
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|
| T |
34971822 |
tgggttg |
34971816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 36107606 - 36107829
Alignment:
| Q |
4 |
agcaacatcaccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaaga |
103 |
Q |
| |
|
||||||| |||||||| |||| |||||||||||| ||||||||| ||| ||| ||||| |||||||||||||||||||| ||||||| | || | ||| |
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| T |
36107606 |
agcaacaacaccaaaacctttggcaattataactgcaaaagatgattcgcatatccaagaaacaattaaatgtgccaaaagcaacaacattcagattaga |
36107705 |
T |
|
| Q |
104 |
atccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatt |
203 |
Q |
| |
|
|| ||||||||||| ||||| |||||||| || ||||| ||||||| ||| ||| | ||||| ||||| || |||| |||||||||||||| |||||| |
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| T |
36107706 |
attcgaagtggcggtcacgactatgaaggtttttcatatgtatcagatgtgccttttattatacttgacatgtttcatctcaattcagttgatatcaatt |
36107805 |
T |
|
| Q |
204 |
tacaagatgaaacaacatgggttg |
227 |
Q |
| |
|
||||||| |||| ||||||||| |
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| T |
36107806 |
tacaagaatcaacagcatgggttg |
36107829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 16 - 227
Target Start/End: Complemental strand, 36090717 - 36090506
Alignment:
| Q |
16 |
aaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatccgaagtggc |
115 |
Q |
| |
|
|||| |||| ||||||||||| ||| ||| |||| ||||||||| |||| |||||||||| |||| |||||| | || | ||||| ||||||||| |
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| T |
36090717 |
aaaacctttggcaattataacagtaaaggatagttcccatgtccaagtaacagttaaatgtgctaaaagtaacaacattcagatcagaattcgaagtggc |
36090618 |
T |
|
| Q |
116 |
ggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttacaagatgaaa |
215 |
Q |
| |
|
|| || ||||| ||||| || ||| | |||||||| || ||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||| |||| |
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| T |
36090617 |
ggacatgattacgaaggtttatcaaatgtatcagacatgccttatgttataattgacttgcttcatctcaattcaattgatgtcaatttagaagaagaaa |
36090518 |
T |
|
| Q |
216 |
caacatgggttg |
227 |
Q |
| |
|
| ||||||||| |
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|
| T |
36090517 |
ctgcatgggttg |
36090506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 8338234 - 8338454
Alignment:
| Q |
7 |
aacatcaccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaagaatc |
106 |
Q |
| |
|
|||| |||||||| |||| |||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| |||||| | || ||||||| |
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|
| T |
8338234 |
aacaacaccaaaatctttggcaattataactgcaaaagatgcttctcatgtccaagcaacaattaaatgtgccaaaagcaacaatattcagataagaatt |
8338333 |
T |
|
| Q |
107 |
cgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatttac |
206 |
Q |
| |
|
||||||||||||||||| || ||||||||||| ||| |||||||| | |||| ||||||||||||| |||||||||||||||||||||| ||||||||| |
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|
| T |
8338334 |
cgaagtggcggccacgactacgaaggcttctcttacgtatcagacatatcttttgttataattgacctgcttcacctcaattcagttgatctcaatttac |
8338433 |
T |
|
| Q |
207 |
aagatgaaacaacatgggttg |
227 |
Q |
| |
|
|||||||||| ||||||||| |
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|
| T |
8338434 |
aagatgaaactgcatgggttg |
8338454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 227
Target Start/End: Original strand, 6838367 - 6838590
Alignment:
| Q |
4 |
agcaacatcaccaaaagctttagcaattataactccaaaagatggttctcatgtccaaacaacaattaaatgtgccaaaatcaacaacttccaattaaga |
103 |
Q |
| |
|
||||||| |||| || |||| |||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||| ||||||| | || | ||| |
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|
| T |
6838367 |
agcaacaacaccgaagcctttggcaattataactgtaaaagatgattctcatgtccaagaaacagttaaatgtgccaaaagcaacaacattcagattaga |
6838466 |
T |
|
| Q |
104 |
atccgaagtggcggccacgattatgaaggcttctcatacttatcagacgtgtcttatgttataattgacttgcttcacctcaattcagttgaagtcaatt |
203 |
Q |
| |
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|| |||||||| || ||||| |||||||| | ||||| ||||||| ||| ||| ||||||| ||||| || |||| |||||||| ||||| ||||||| |
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| T |
6838467 |
attcgaagtggtggtcacgactatgaaggttgttcatatgtatcagatgtgccttttgttatacttgacatgtttcatctcaattctgttgatgtcaatt |
6838566 |
T |
|
| Q |
204 |
tacaagatgaaacaacatgggttg |
227 |
Q |
| |
|
||||||| |||| ||||||||| |
|
|
| T |
6838567 |
tacaagaatcaacagcatgggttg |
6838590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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