View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_80 (Length: 216)
Name: NF18704_high_80
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_80 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 21 - 216
Target Start/End: Original strand, 15380210 - 15380405
Alignment:
| Q |
21 |
ctataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaaggatcaaactcccaatgaaaagaacnnnnnnnnntgaacagtagtactaat |
120 |
Q |
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| T |
15380210 |
ctataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaaggatcaaactcccaatgaaaagaacaaaaaaaaatgaacagtagtactaat |
15380309 |
T |
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| Q |
121 |
aaaggaagnnnnnnnncttaaaataaataaggtggtggtccaagtttgtccagaaacctc-aaattttattatagaaggtttttgagtttcataatt |
216 |
Q |
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| T |
15380310 |
aaaggaag-aaaaaaacttaaaataaataaggtggtggtccaagtttgtccagaaacctcaaaattttattatagaaggtttttgagtttcataatt |
15380405 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 72
Target Start/End: Complemental strand, 26435801 - 26435751
Alignment:
| Q |
22 |
tataaaagaaggaaattaaataactgtttgtgggtagatgatgacaaagga |
72 |
Q |
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||||||| ||||||||||||| |||||| |||||||||| |||||||||| |
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| T |
26435801 |
tataaaaagaggaaattaaatagctgtttctgggtagatgttgacaaagga |
26435751 |
T |
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