View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_high_9 (Length: 531)
Name: NF18704_high_9
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 225 - 514
Target Start/End: Complemental strand, 14259110 - 14258821
Alignment:
| Q |
225 |
ggattgtagttgatttttcagagctatttgaatcagtagttgaccatagtctaacgattcttgcaaaaaagcaccacttactcttattgtcggtaatgct |
324 |
Q |
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| T |
14259110 |
ggattgtagttgatttttcagagctatttgaatcagtagttgaccatagtctaacgattcttgcaaaaaagcaccacttacttttattgtcggtaatgct |
14259011 |
T |
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| Q |
325 |
aataaaagagtcatagctaggagccatttaaaatttttgataagaatgattgagtggcacaaactgattttgtgaatggcaaaacatcattgagcaggaa |
424 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
14259010 |
aataaaagagtcatagctaggagccatttaaaaattttgataagaatgattgagtggtacaaactgattttgtgaatggcaaaacatcattgagcaggaa |
14258911 |
T |
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| Q |
425 |
taatatttaaaccacaagtgctaataatattttggttgaccctgcaaattctaaagtaattgtctgtaaaatgcattgaatgatatctct |
514 |
Q |
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| T |
14258910 |
taatatttaaaccacaagtgctaataatattttggttgaccctgcaaattctaaagtaattgtctgtaaaatgcattgaatgatatctct |
14258821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 15 - 117
Target Start/End: Complemental strand, 14259327 - 14259225
Alignment:
| Q |
15 |
tatacatgataaaaacaacttcttctttcaaataaaatttgaacttgttgaaaggttcactaccaaccattgcatgtatcttgtgaccctgcaagcaaga |
114 |
Q |
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| T |
14259327 |
tatacatgataaaaacagcttcttctttcaaagaaaatttgaacttgttgaaaagttcactaccaaccattgcatgtatcttgtgaccctgcaagcaaga |
14259228 |
T |
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| Q |
115 |
tat |
117 |
Q |
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||| |
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| T |
14259227 |
tat |
14259225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 225 - 354
Target Start/End: Complemental strand, 46458970 - 46458840
Alignment:
| Q |
225 |
ggattgtagttgatttttcagagctatttgaatcagtagttgaccatagtctaacgattcttgcaaaaaagcaccac-ttactcttattgtcggtaatgc |
323 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
46458970 |
ggattgtagttgaattttcagagctatttgaatcagtagttgaccatagtctaacgattctggcaaaaaagcaccactttactcttattgtcggtaatgt |
46458871 |
T |
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| Q |
324 |
taataaaagagtcatagctaggagccattta |
354 |
Q |
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| T |
46458870 |
taataagagagtaatagttaggacccattta |
46458840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 359 - 420
Target Start/End: Complemental strand, 46457040 - 46456980
Alignment:
| Q |
359 |
ttttgataagaatgattgagtggcacaaactgattttgtgaatggcaaaacatcattgagca |
420 |
Q |
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| T |
46457040 |
ttttgataagaatgattgagtggcacaaa-ttattttgtgaatggcagagcatcattgagca |
46456980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 289 - 381
Target Start/End: Original strand, 29468750 - 29468841
Alignment:
| Q |
289 |
aaaaaagcaccacttactcttattgtcggtaatgctaataaaagagtcatagctaggagccatttaaaatttttgataagaatgattgagtgg |
381 |
Q |
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| T |
29468750 |
aaaaaaacaccatctactcttattgtcgttaatgttaataagagagtcatagctgggagccatttagaa-atttgataagaatgattgagtgg |
29468841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 18156741 - 18156673
Alignment:
| Q |
15 |
tatacatgataaaaacaacttcttctttcaaataaaatttgaacttgttgaaaggttcactaccaacca |
83 |
Q |
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||||||||||| | ||||| |||||||||||| ||| | |||||||||| |||||||| || ||||||| |
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| T |
18156741 |
tatacatgatatagacaacgtcttctttcaaagaaagtatgaacttgttaaaaggttcgcttccaacca |
18156673 |
T |
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