View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_low_1 (Length: 1556)
Name: NF18704_low_1
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_1 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 1333; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 1333; E-Value: 0
Query Start/End: Original strand, 16 - 1540
Target Start/End: Original strand, 6915865 - 6917393
Alignment:
| Q |
16 |
atcatttctggaatgggagaactacacttagatatttatgttaaatgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaact |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915865 |
atcatttctggaatgggagaactacacttagatatttatgttaaacgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaact |
6915964 |
T |
|
| Q |
116 |
tcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaaggacaatatggacgagtgattggatatattgaacc |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6915965 |
tcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggagggcaaggacaatatggacgagtgattggatatattgaacc |
6916064 |
T |
|
| Q |
216 |
acttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaa |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916065 |
acttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaa |
6916164 |
T |
|
| Q |
316 |
gaagctgccaactctggtgccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttg |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916165 |
gaagctgccaactctggtgccttgattggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttg |
6916264 |
T |
|
| Q |
416 |
cctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaac |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6916265 |
cctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgc----tgaactgaaagtaccaac |
6916360 |
T |
|
| Q |
516 |
agaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgtc |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||| |
|
|
| T |
6916361 |
agaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctcatgtg |
6916460 |
T |
|
| Q |
616 |
cctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctc |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916461 |
cctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctc |
6916560 |
T |
|
| Q |
716 |
atgatgtacagacccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaatttattgggggtagtt |
815 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
6916561 |
atgatgtacagacccgattgataaacacatacaagggcaataaggcagctgaatgatatggcctttcaagtacacggtcctaaattttttgggggtagtt |
6916660 |
T |
|
| Q |
816 |
atctagaaaaaagaattgtagttttggttcannnnnnngggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttgg |
915 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916661 |
atctggaaaaaagaattgtggttttggttcatttttttgggtcaacaaaattttgaaagcaaataaaaagtagctataattgtgatagtgtacaatttgg |
6916760 |
T |
|
| Q |
916 |
tgtcactccaatgtttttattgggaaacttgatttaatattaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttc |
1015 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916761 |
tgtcactccaatgtttttattgggaaacttgatttaacattaaatttatcatatatttgcgttttcttatattttagttgacacatacatgctcattttc |
6916860 |
T |
|
| Q |
1016 |
aattctatcatacattgttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaaatctgtgatgaggtgataatcatggcaggcttc |
1115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6916861 |
aattctatcatacattgttcagctagtttagatttttgttcacttatcaatgcacttctgactgtaaa--tgtgatgaggtgataatcatggcaggcttc |
6916958 |
T |
|
| Q |
1116 |
ttgtatattgttccggtctggccaaaagggcggccatatccaagtcctttcaacaatttggagttcattgattcattctgaattatcaccttcacaaagc |
1215 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6916959 |
ttgtatattgttccggtctggccaaaagggcgaccatatccaagtcctttcaacaatttggagttcattgattcattctgaattatcaccttcacaaagc |
6917058 |
T |
|
| Q |
1216 |
taaggtttagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcatt |
1315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6917059 |
taaggtctagaaacagtcacacagtgacagacgcagcaatgttcctctgaatctcaataggcagaagaactgttggaagaaaattcagtttagcatcatt |
6917158 |
T |
|
| Q |
1316 |
cacggcggcgacagtgaagtctccgttgaaccgccttcattagtcaaagct-------cgccattgacagcaccccgagtttcccatggacacgctcaga |
1408 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||| |
|
|
| T |
6917159 |
cacggcggcgacagtgaagtctccgccaaaccgccttcattagtcaaagctcgagcagcgccattgacagcacgccgagtttcccacagacacgctcaga |
6917258 |
T |
|
| Q |
1409 |
gattgatcctgaagccgcagcagtttgagacgagtccgctcccgtatctggcaatcagtttgagctgtgctgtgctcgtggaagcctagccgcccaggag |
1508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |
|
|
| T |
6917259 |
gattgatcctgaagccgcagcagtttgagacgagtctgctcccgtatctggcaaacagtttgagctgtgccatgctcgtggaagcgtagccacccaggag |
6917358 |
T |
|
| Q |
1509 |
a--ccgcccaagaatt-atctgaagccgtgttcgt |
1540 |
Q |
| |
|
| ||||||||||||| |||||||||||||||||| |
|
|
| T |
6917359 |
aggccgcccaagaattgatctgaagccgtgttcgt |
6917393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 1033 - 1121
Target Start/End: Original strand, 6890644 - 6890724
Alignment:
| Q |
1033 |
ttcagctagtttagatttttgttcacttatcaatgcacttccgactgtaaatctgtgatgaggtgataatcatggcaggcttcttgtat |
1121 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||| ||||| ||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
6890644 |
ttcagctagtttagattttggttcacttgtcaatgtacttctgactgta--------atgaggtgatattcatggcaggcttcttgtat |
6890724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 6e-53; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 6e-53
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 15039391 - 15039269
Alignment:
| Q |
81 |
ggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaa |
180 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
|
|
| T |
15039391 |
ggttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaa |
15039292 |
T |
|
| Q |
181 |
ggacaatatggacgagtgattgg |
203 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
15039291 |
ggacaatatggacgggtgattgg |
15039269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 2e-49
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
205 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
304 |
Q |
| |
|
|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
|
| Q |
305 |
aaggttttaaagaagctgccaactc |
329 |
Q |
| |
|
||||||||| ||||||||||||||| |
|
|
| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 1e-44
Query Start/End: Original strand, 335 - 447
Target Start/End: Complemental strand, 15038167 - 15038055
Alignment:
| Q |
335 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctat |
434 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctat |
15038068 |
T |
|
| Q |
435 |
ctatgcttttaga |
447 |
Q |
| |
|
||||||||||||| |
|
|
| T |
15038067 |
ctatgcttttaga |
15038055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 85; E-Value: 8e-40
Query Start/End: Original strand, 664 - 772
Target Start/End: Complemental strand, 15036049 - 15035941
Alignment:
| Q |
664 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatacaagggcaataaggcag |
763 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||| |
|
|
| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatacaagggcaataaggcac |
15035950 |
T |
|
| Q |
764 |
ctgaatgat |
772 |
Q |
| |
|
||||||||| |
|
|
| T |
15035949 |
ctgaatgat |
15035941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 72; E-Value: 5e-32
Query Start/End: Original strand, 449 - 552
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
449 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
548 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
|
| Q |
549 |
caag |
552 |
Q |
| |
|
|||| |
|
|
| T |
15037828 |
caag |
15037825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.00000000000001
Query Start/End: Original strand, 613 - 667
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
613 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
667 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |
|
|
| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 552 - 614
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
552 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
614 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||| |||||| |||||||| | ||||||||| |
|
|
| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 15039971 - 15039923
Alignment:
| Q |
19 |
atttctggaatgggagaactacacttagatatttatgttaaatgcatta |
67 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||| || |||||| |
|
|
| T |
15039971 |
atttctggaatgggagaactgcacttagatatctatgttgaacgcatta |
15039923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University