View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_12 (Length: 517)
Name: NF18704_low_12
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 6 - 507
Target Start/End: Complemental strand, 7110654 - 7110189
Alignment:
| Q |
6 |
atgattgatttgtttatatggtagattgtagatttgcaaatcatatcctttttctcatttaaaatccaaaagctg---attcttctttcctcatttatgc |
102 |
Q |
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| T |
7110654 |
atgattgatttgtatatatggtagattgtggatttgcaaatcatatcctttttctcattcaaaatcggaaagctgctgattcttctttcctcatttatg- |
7110556 |
T |
|
| Q |
103 |
acatttatatcacaaatgggaaataattcaatttcttaaaacaatatttattcttgctgaccaaaatgnnnnnnngtcattgaacaaatcccattttcat |
202 |
Q |
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| T |
7110555 |
------------------ggaaataattcaattttttgaaacaatatttattcttgctgaccaaaatgaaaatat-tcaatgaacaaatcccattttcat |
7110475 |
T |
|
| Q |
203 |
gtgtataaattaagattgatgtaagtcttgcagacatgagtatacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaat |
302 |
Q |
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| T |
7110474 |
gtgtataaattaagattgatgtaagtcttgtagacatgagtataca----acaatggcaatt------------atcttaaagttttcaatactcttaat |
7110391 |
T |
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| Q |
303 |
catactatttgcattcacgg---ctagagagactatagctattattaacaataacgtgcaggctccaactctaccaatcttgcttcgccatacaacagtt |
399 |
Q |
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| T |
7110390 |
catactacttgcattcgcggtggctagagagactgtagcta------acaataaggtgcaggctccaactctaccaatcttgcttcgccatacaacagtt |
7110297 |
T |
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| Q |
400 |
tatattatcaatatggtgaaggctccaaatccaacacccttgactcttcgttgccaatctaaagatgacgatcttgaagaacaaacaatccattataaaa |
499 |
Q |
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| T |
7110296 |
tatattatcaataaggtgaaggctccaaatccaacacccttgactcttcgttgccaatctaaagatgacgatcttgaagaacatacaatccattataaaa |
7110197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 206 - 341
Target Start/End: Complemental strand, 7116582 - 7116451
Alignment:
| Q |
206 |
tataaattaagattgatgtaagtcttgcagacatgagtatacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcat |
305 |
Q |
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|||||||||||||||| |||| ||||| || ||| | | ||||||||||||||| ||||||||| ||||||| |||| ||||||||||| ||||||| |
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| T |
7116582 |
tataaattaagattgaggtaaatcttgtaggcat---tgtgcatacaacaatggcagttccaagtt-aattaccataaaattttcaatactactaatcat |
7116487 |
T |
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| Q |
306 |
actatttgcattcacggctagagagactatagctat |
341 |
Q |
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| T |
7116486 |
actagttgcattcgtggctagagagactatagctat |
7116451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 17374106 - 17374010
Alignment:
| Q |
247 |
catacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcattcacggctagagagactatagctatta |
343 |
Q |
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| T |
17374106 |
catacaacaatggcagttccaagtacaattaccttcaaattttcgatactcctaatcatactattctcatttgaagctagagaaactatagctatta |
17374010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 206 - 342
Target Start/End: Original strand, 31117675 - 31117808
Alignment:
| Q |
206 |
tataaattaagattgatgtaagtcttgcagacatgagtatacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcat |
305 |
Q |
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|||||||||||||||||||| |||||| || ||| | | |||||||||||||||||||||||| |||| |||||||| | ||||||||| ||||||| |
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| T |
31117675 |
tataaattaagattgatgtatgtcttgtaggcat---tgtgcatacaacaatggcaattccaagtgcaatcaccttaaaatcatcaatactcctaatcat |
31117771 |
T |
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| Q |
306 |
actatttgcattcacggctagagagactatagctatt |
342 |
Q |
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| T |
31117772 |
gctacttgcatttgaggctagagagactatcgctatt |
31117808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 6606533 - 6606641
Alignment:
| Q |
206 |
tataaattaagattgatgtaagtcttgcagacatgagtatacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcat |
305 |
Q |
| |
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|||||||||| |||| || ||||||||||| ||| | | ||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |
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| T |
6606533 |
tataaattaatattgttgcaagtcttgcaggcat---tgtgcatacaacaatggcagttccaagttcaattaccttaaaattttcaatactcataatcac |
6606629 |
T |
|
| Q |
306 |
actatttgcatt |
317 |
Q |
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|||| ||||||| |
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| T |
6606630 |
actacttgcatt |
6606641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 247 - 341
Target Start/End: Original strand, 6631704 - 6631798
Alignment:
| Q |
247 |
catacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcattcacggctagagagactatagctat |
341 |
Q |
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| T |
6631704 |
catacaacaatgacagttccaaattcaattagcttaaaattttcaatactcataatcatactacttgcatttgaggctagtgatactatagctat |
6631798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 244 - 317
Target Start/End: Original strand, 6615652 - 6615728
Alignment:
| Q |
244 |
atacatacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatca---tactatttgcatt |
317 |
Q |
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|
|||||||||||||||| | || ||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||| |
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| T |
6615652 |
atacatacaacaatggaagttacaagtccaattaccttaaaattttcaatattcttaatcatggtactatttgcatt |
6615728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 438 - 471
Target Start/End: Original strand, 9036816 - 9036849
Alignment:
| Q |
438 |
cttgactcttcgttgccaatctaaagatgacgat |
471 |
Q |
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| T |
9036816 |
cttgactcttcgttgccaatctaaagatgacgat |
9036849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 339
Target Start/End: Original strand, 6613025 - 6613116
Alignment:
| Q |
248 |
atacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcattcacggctagagagactatagct |
339 |
Q |
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||||||||||| ||| ||||||| |||||| |||||| | |||||||||| ||| | |||| ||||||| ||| ||||||||||||||| |
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| T |
6613025 |
atacaacaatgacaactccaagtacaattatcttaaaatgttcaatactcctaactacactacttgcatttgaggccagagagactatagct |
6613116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 247 - 343
Target Start/End: Complemental strand, 596508 - 596412
Alignment:
| Q |
247 |
catacaacaatggcaattccaagttcaattaccttaaagttttcaatactcttaatcatactatttgcattcacggctagagagactatagctatta |
343 |
Q |
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||||||||||||||| |||||||| |||||||||| || || || |||||| ||||||||||||| |||| |||||||| ||||||||||||| |
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| T |
596508 |
catacaacaatggcagttccaagtacaattaccttcaaattatcgatactcctaatcatactattctcatttgaagctagagaaactatagctatta |
596412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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