View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_14 (Length: 497)
Name: NF18704_low_14
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 453
Target Start/End: Original strand, 6474691 - 6475128
Alignment:
| Q |
16 |
tcagcagtttccatgtctttatacggtatcaataggagactttgtcaccaaaagagctcccacaaggtagaagcattaacatgtatttctggctggcagt |
115 |
Q |
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| T |
6474691 |
tcagcagtttccatgtctttatacggtatcaacaggagactttgtcaccaaaagagctcccacaaggtagaagcattaacatgtatttctggctggcagt |
6474790 |
T |
|
| Q |
116 |
gttcaattgatattcaaacatcatgcctccacttgttaattgcacccataatcctcttcaaaccaatgctagccatcttttcttgagtgagagagattga |
215 |
Q |
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| T |
6474791 |
gttcaattgatattcaaacatcatgcctccacttgttaattgcacccataatcctcttcaaaccaatgctagccatcttttcttgagtgagagagattga |
6474890 |
T |
|
| Q |
216 |
gattggaatttggatttggatttgaaggtcacaatagtgaaattatttttgagcgatcatttattgatttagatttaccgcaattgcaaaaccctcacta |
315 |
Q |
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| T |
6474891 |
gattggaatttggatttggatttgaaggtcacaatagtgaaattatttttgagcgatcatttattgatttagatttactgcaattgcaaaaccctcacta |
6474990 |
T |
|
| Q |
316 |
actacaatcaacacatttctggccattgaatggaaatcagaacttatattttgactatgtcaatttgtgatttgaaatttataaacttaaaatttaagtg |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6474991 |
actacaaccaacacatttctggccattgaatggaaatcagaacttatattttaactatgtcaatttgtgatttgaaatttataaacttaaaatttaagtg |
6475090 |
T |
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| Q |
416 |
gtttgatcttaatctaatttcctagatatagaccgtag |
453 |
Q |
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| T |
6475091 |
gtttgatcttaatccaatttcttagatatagacggtag |
6475128 |
T |
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