View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_16 (Length: 494)
Name: NF18704_low_16
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 148 - 483
Target Start/End: Original strand, 42070525 - 42070860
Alignment:
| Q |
148 |
gctataggtcatggaagcttagaaagaaagggtactttgttttctaggacacttttgtggtcacacgcatgtctgtttcggtcccattcttcttagcttt |
247 |
Q |
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| T |
42070525 |
gctataggtcatggaagcttagaaagaaagggtactttgttttctaggacacttttgtggtcacacgcatgtctgtttcggtcccattcttcttagcttt |
42070624 |
T |
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| Q |
248 |
tcattttatctaattttatatacgatacaccttttgtgtgtatgataatttttcaattgttttctatatagtttaagaatttaattttagaaaaacccta |
347 |
Q |
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| T |
42070625 |
tcattttatctaattttatatacgatacaccttttgtgtgtatgataatttttcaattgttttccatatagtttaagaatttaattttagaaaaacccta |
42070724 |
T |
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| Q |
348 |
ttcaaacatttgatgatatataggtgcaccaccactaccaaggccataaaaccacgacaagtctcatttagtggagtttatgatgacatcaatcccacca |
447 |
Q |
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| T |
42070725 |
ttcaaacatttgatgatatataggtgcaccaccactaccaaggccataaaaccacgacaagtctcatttagtggagtttatgatgacatcaatcccacca |
42070824 |
T |
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| Q |
448 |
tgtcatgacgtcttttctttcaatcttagtgcctat |
483 |
Q |
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| T |
42070825 |
tgtcatgacgtcttttctttcaatcttagtgcctat |
42070860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 17 - 93
Target Start/End: Original strand, 42070393 - 42070469
Alignment:
| Q |
17 |
aataaggtcagtcactagacactgttttcttttctttctgcaatgttactattaacttgcttcggcatggaaccccc |
93 |
Q |
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| T |
42070393 |
aataaggtcagtcactagacactgttttcttttctttctgcaatgttactattaacttgcttcggcatggaaccccc |
42070469 |
T |
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