View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_2 (Length: 765)
Name: NF18704_low_2
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 683; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 16 - 747
Target Start/End: Original strand, 6915865 - 6916592
Alignment:
| Q |
16 |
atcatttctggaatgggagaactacacttagatatttatgttaaatgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaact |
115 |
Q |
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| T |
6915865 |
atcatttctggaatgggagaactacacttagatatttatgttaaacgcattaagatggagtatggggttgatgctacagttggaaagccccgggtaaact |
6915964 |
T |
|
| Q |
116 |
tcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaaggacaatatggacgagtgattggatatattgaacc |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6915965 |
tcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggagggcaaggacaatatggacgagtgattggatatattgaacc |
6916064 |
T |
|
| Q |
216 |
acttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaa |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916065 |
acttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgagaaaggttttaaa |
6916164 |
T |
|
| Q |
316 |
gaagctgccaactctggtgccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttg |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6916165 |
gaagctgccaactctggtgccttgattggacatccagttcaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttg |
6916264 |
T |
|
| Q |
416 |
cctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaac |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
6916265 |
cctttaagttggcttctatctatgcttttagagagtgttacacagcttccagaccagttatattagaacctgttatgc----tgaactgaaagtaccaac |
6916360 |
T |
|
| Q |
516 |
agaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgtc |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||| |
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| T |
6916361 |
agaatttcagggagctgttgctggtgacctcaacaagagaaaaggtgtgattgttggcaatgttcaggacgaagattattctgtcattacagctcatgtg |
6916460 |
T |
|
| Q |
616 |
cctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctc |
715 |
Q |
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| T |
6916461 |
cctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctc |
6916560 |
T |
|
| Q |
716 |
atgatgtacagacccgattgataaacacatac |
747 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
6916561 |
atgatgtacagacccgattgataaacacatac |
6916592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 107; Significance: 3e-53; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 81 - 203
Target Start/End: Complemental strand, 15039391 - 15039269
Alignment:
| Q |
81 |
ggttgatgctacagttggaaagccccgggtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatctggaggacaa |
180 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |
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| T |
15039391 |
ggttgatgctacagttggaaagccccgtgtaaacttcagagaaactgttactcaacgtgctgattttgattatttacataagaagcaatccggagggcaa |
15039292 |
T |
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| Q |
181 |
ggacaatatggacgagtgattgg |
203 |
Q |
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|||||||||||||| |||||||| |
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| T |
15039291 |
ggacaatatggacgggtgattgg |
15039269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 205 - 329
Target Start/End: Complemental strand, 15038438 - 15038314
Alignment:
| Q |
205 |
tatattgaaccacttcctgctgggtcaggaactaagtttgaatttgacaacatgcttgttggtcaagctattccatcgaattttttccctgcaattgaga |
304 |
Q |
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|||||||||||||| ||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
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| T |
15038438 |
tatattgaaccactccctgctgggtcagaaactaagtttgaatttgaaaacatgcttgttggtcaagctattccatcaaattttttcgctgcaattgaga |
15038339 |
T |
|
| Q |
305 |
aaggttttaaagaagctgccaactc |
329 |
Q |
| |
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||||||||| ||||||||||||||| |
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| T |
15038338 |
aaggttttatagaagctgccaactc |
15038314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 335 - 447
Target Start/End: Complemental strand, 15038167 - 15038055
Alignment:
| Q |
335 |
ccttgattggacatccagttgaaaatctccgagttgtcttgacagatggtgctgctcatgatgttgattccagtgaacttgcctttaagttggcttctat |
434 |
Q |
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|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||| |
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| T |
15038167 |
ccttaattggacatcccgttgaaaatctccgagttgtcttgacagatggtgctgctcatgctgttgattccagtgagcttgcctttaagatggcttctat |
15038068 |
T |
|
| Q |
435 |
ctatgcttttaga |
447 |
Q |
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||||||||||||| |
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| T |
15038067 |
ctatgcttttaga |
15038055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 449 - 552
Target Start/End: Complemental strand, 15037928 - 15037825
Alignment:
| Q |
449 |
agtgttacacagcttccagaccagttatattagaacctgttatgcttgttgaactgaaagtaccaacagaatttcagggagctgttgctggtgacctcaa |
548 |
Q |
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|||||||||| |||||||||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| |
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| T |
15037928 |
agtgttacactgcttccagaccaactatattagagcctgttatgcttgttgagctaaaagtaccaaatgaatttcagggagctgttgctggtgacctcaa |
15037829 |
T |
|
| Q |
549 |
caag |
552 |
Q |
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|||| |
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| T |
15037828 |
caag |
15037825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 664 - 747
Target Start/End: Complemental strand, 15036049 - 15035966
Alignment:
| Q |
664 |
cagggaaagggtgaattcacaatggaatataaggaacattcacgtgtttctcatgatgtacagacccgattgataaacacatac |
747 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||| ||||| |
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| T |
15036049 |
cagggaaagggtgaatttacaatggaatataaggaacattcacctgtttctcatgatgtacagacccaattggtaaacgcatac |
15035966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 613 - 667
Target Start/End: Complemental strand, 15036192 - 15036138
Alignment:
| Q |
613 |
gtccctcttaacaatatgtttgggtattctacggctattcgttcgatgacacagg |
667 |
Q |
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| T |
15036192 |
gtccctcttaacaatatgtttgggtactctacagctcttcgttcgatgacacagg |
15036138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 552 - 614
Target Start/End: Complemental strand, 15037738 - 15037676
Alignment:
| Q |
552 |
gagaaaaggtgtgattgttggcaatgatcaggatgaagatgattctgtcataacagctcatgt |
614 |
Q |
| |
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|||||| ||| |||||||||||||||||||||||| |||||| |||||||| | ||||||||| |
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| T |
15037738 |
gagaaagggtatgattgttggcaatgatcaggatggagatgactctgtcattatagctcatgt |
15037676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 15039971 - 15039923
Alignment:
| Q |
19 |
atttctggaatgggagaactacacttagatatttatgttaaatgcatta |
67 |
Q |
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|||||||||||||||||||| ||||||||||| |||||| || |||||| |
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| T |
15039971 |
atttctggaatgggagaactgcacttagatatctatgttgaacgcatta |
15039923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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