View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_20 (Length: 427)
Name: NF18704_low_20
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 391; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 5 - 411
Target Start/End: Original strand, 29050431 - 29050837
Alignment:
| Q |
5 |
agcagcagagataagtgaatgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgc |
104 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29050431 |
agcagaagagataagtgaatgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgc |
29050530 |
T |
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| Q |
105 |
tcatgttgtaaaaagagtgaaaaaaggttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaacta |
204 |
Q |
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| T |
29050531 |
tcatgttgtaaaaagagtgaaaaaaggttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaacta |
29050630 |
T |
|
| Q |
205 |
tgttgtctctcaagttcacttaacgaatgtacatgaaacaactttggtccactgaaactagttgtatttgtatcattattacgacattcaatcattgatg |
304 |
Q |
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| T |
29050631 |
tgttgtctctcaagttcacttaacgaatgtacatgaaacaactttggtccactgaaagtagttgtatttgtatcattattacgacattcgatcattgatg |
29050730 |
T |
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| Q |
305 |
atgaaatgcacatgttcaatcatgtaactttatggataaaaagccttgtttgtgtaacaactttgtctacgaggaaattcctgtttaccataaagtagaa |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29050731 |
atgaaatgcacatgttcaatcatgtaactttatggataaaaagccttgtttgtgtaacaactttgtctgcgaggaaattcctgtttaccataaagtagaa |
29050830 |
T |
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| Q |
405 |
aatgctt |
411 |
Q |
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| T |
29050831 |
aatgctt |
29050837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 353
Target Start/End: Original strand, 29053627 - 29053964
Alignment:
| Q |
13 |
agataagtgaatgggaatgtgatgcacttgataaagatcaacacaccatgagttgactcttgttgacccacttggaaaaagaccagcattgctcatgttg |
112 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| | |||||| |||||||||||||||||||| |||||||||||| |||| ||||||||| |
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| T |
29053627 |
agataagtgaatgggaatttgatgcacttgataaagatcaactccccatgaattgactcttgttgacccactgggaaaaagaccaacattactcatgttg |
29053726 |
T |
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| Q |
113 |
taaaaagagtgaaaaaag-gttctgtgtatttggaaggattgtgacaatgtgttaatgtgcaactcagataccagacaacatatccttaactatgttgtc |
211 |
Q |
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||||||||||||||||| ||| |||||||| ||||||| ||||||| ||| | ||| |||||| |||||||||||| |||||||||||| |||||| |
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| T |
29053727 |
taaaaagagtgaaaaaaatgttatgtgtattaggaaggagtgtgacactgt----acgtgtaactcatataccagacaacttatccttaactaggttgtc |
29053822 |
T |
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| Q |
212 |
tctcaagttcacttaacgaatgtacatgaaacaactttggtccactgaaactagttgtatttgtatcattattacgacattcaatcattgatgatgaaat |
311 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||| | |||||||||||||||| |||| |
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| T |
29053823 |
tctcaagttcagttaacgaatgtacatgaaaccgttttggtccactaaaaggagttgtatttgtatcattattacggcgttcaatcattgatgattaaat |
29053922 |
T |
|
| Q |
312 |
gcacatgttcaatcatgtaactttatggataaaaagccttgt |
353 |
Q |
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||| ||||||| |||||||||| | |||||||||||||||| |
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| T |
29053923 |
gcagatgttcattcatgtaactctccggataaaaagccttgt |
29053964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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