View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_21 (Length: 426)
Name: NF18704_low_21
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 104 - 217
Target Start/End: Original strand, 11665461 - 11665574
Alignment:
| Q |
104 |
aggtactcattgcactgctgtaatagcaccattctttcttaatcaggataaacaccagctgaatactcactttacagggagcttggacaaaagggattgc |
203 |
Q |
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| T |
11665461 |
aggtcctcattgcactgctgtaatagcaccatcctttcttaatcaggataaacaccagctgaatactcactttacagggagctttgacaaaagggattgc |
11665560 |
T |
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| Q |
204 |
aagctatctagtcg |
217 |
Q |
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| T |
11665561 |
aagctatctagtcg |
11665574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Original strand, 11663807 - 11663854
Alignment:
| Q |
14 |
atcaacacttgaaagatctgaagattacaacatatcatagcctttcaa |
61 |
Q |
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| T |
11663807 |
atcaacacttgaaagatctgaagattacaacatgtcatagcctttcaa |
11663854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Original strand, 11664809 - 11664854
Alignment:
| Q |
58 |
tcaaaaaattagcaaagacaattaaaataggatgggaacatacaat |
103 |
Q |
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| T |
11664809 |
tcaaaaaattagcaaagacaattaaaatagaatgggaacatacaat |
11664854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 119 - 217
Target Start/End: Complemental strand, 21693299 - 21693201
Alignment:
| Q |
119 |
tgctgtaatagcaccattctttcttaatcaggataaacaccagctgaatactcactttacagggagcttggacaaaagggattgcaagctatctagtcg |
217 |
Q |
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| T |
21693299 |
tgctgtaatagcaccattctttcttaatcagggtaaacaacagctgaatactcactttacagggagctttgacaaaagggattgcaagctatctagtcg |
21693201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 243 - 310
Target Start/End: Complemental strand, 21709041 - 21708974
Alignment:
| Q |
243 |
acatcctaatgagattgtcaaggaaaacgagtttgagtatttgcaattgcggaagcatgacctggttc |
310 |
Q |
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| T |
21709041 |
acatcctaatgagattgtcaaggaaaacgagtttgagtatttgcaattgcggaagcatgacctggttc |
21708974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 232 - 382
Target Start/End: Original strand, 21713441 - 21713589
Alignment:
| Q |
232 |
gtattcgggacacatcctaatgagattgtcaaggaaaacgagtttgagtatttgcaattgcggaagcatgacctggttctggtatattggtgagatgaac |
331 |
Q |
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| T |
21713441 |
gtattcaggacacatcccaatgagattgtcaagagaactgagtttgagaacttccagttgagaaagcatggtgtggttcagg--tattggtgagatgaat |
21713538 |
T |
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| Q |
332 |
tatgtctatcatcacattcaccaaatatatatttcagctcaggagcttttg |
382 |
Q |
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| T |
21713539 |
gatgttcatgatcacattcaccaaatatatatttcagctcatgaccttttg |
21713589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 61
Target Start/End: Complemental strand, 21695072 - 21695025
Alignment:
| Q |
14 |
atcaacacttgaaagatctgaagattacaacatatcatagcctttcaa |
61 |
Q |
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| T |
21695072 |
atcaacacttgaaagatctgaagattacaacatatcatagcttttcaa |
21695025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 58 - 103
Target Start/End: Complemental strand, 21693962 - 21693917
Alignment:
| Q |
58 |
tcaaaaaattagcaaagacaattaaaataggatgggaacatacaat |
103 |
Q |
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| T |
21693962 |
tcaaaaaattagcaaagacagttaaaataggatgggaacatacaat |
21693917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 232 - 375
Target Start/End: Complemental strand, 21706089 - 21705949
Alignment:
| Q |
232 |
gtattcgggacacatcctaatgagattgtcaaggaaaacgagtttgagtatttgcaattgcggaagcatgacctggttctggtatattggtgagatgaac |
331 |
Q |
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|||||||||||| |||| ||| | ||||| |||||| |||| ||||||| || || ||| |||||||||| ||||| |||||| | |||||| ||| |
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| T |
21706089 |
gtattcgggacatatcccaataa-attgtgaaggaattcgagattgagtactttcagttgaggaagcatgatgtggttgtggtattt--gtgagaagaat |
21705993 |
T |
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| Q |
332 |
tatgtctatcatcacattcaccaaatatatatttcagctcagga |
375 |
Q |
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| T |
21705992 |
gatgttcatgatcacattcaccaaatatatatttcagctcagga |
21705949 |
T |
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