View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_22 (Length: 424)
Name: NF18704_low_22
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 9574684 - 9575077
Alignment:
| Q |
1 |
acttcagaagagatatttgatcttgtaaatgtcaggtattgcaaagatcaagcgaggttatgatattatgttggatcttcataggagtttcttgaagaac |
100 |
Q |
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| T |
9574684 |
acttcataagagatatttgatcttgtaaatgtcaggtactacaatgctcaagcgaggctatgatattatgttggatcttcataggggtttcatgaagaac |
9574783 |
T |
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| Q |
101 |
cactgagttttgcctttgtattcacatgtgtgggtgatgacttgccagcagacatacatgtgtgctcaataacttcctctgcatatttattttgagaaag |
200 |
Q |
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| T |
9574784 |
cactgagttttgcctttgtattcacatgtatgggtgatgacttgccagtagacatacatgtgtgctcaataacttcctctgcatatttattttgagaaag |
9574883 |
T |
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| Q |
201 |
aaaaataactggacggg--tgatgacttcacgaaaaattcaaagttaagcttagacataatcaattcataaagagagtcagaagaagcggcaagaataat |
298 |
Q |
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| T |
9574884 |
aaaaataactggacgggcctcaatccttcatggaaaattcaaagttaagcttagacataatcaattcataaagatagtcagaagaagcggcaagaatgat |
9574983 |
T |
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| Q |
299 |
ggcatccacatacaaaagaatatagacgatgtcattgacatgttgataaataaataaagagtggtcaaaataatttgagagaatcccattgtgg |
392 |
Q |
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| T |
9574984 |
gtcatccacatacaaaagaatatagacggtgtcattgccatgttgataaataaataaagagtggtcaaaataatttaagagaatcccattgtgg |
9575077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 424
Target Start/End: Original strand, 9575109 - 9575144
Alignment:
| Q |
389 |
gtggggtgcttgtataagtccatggagagaattttt |
424 |
Q |
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| T |
9575109 |
gtggggtgcttgtataagtccatggagagaattttt |
9575144 |
T |
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