View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_26 (Length: 393)
Name: NF18704_low_26
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 23 - 377
Target Start/End: Complemental strand, 20565957 - 20565601
Alignment:
| Q |
23 |
caaattgtgtttataagttacgagtcattaatgttctgattttgatgaggtaataaaagttgttatgtagcataccaaaagttagcgacggannnnnnnn |
122 |
Q |
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| T |
20565957 |
caaattgtgtttataagttacaagtcattaatgttctgattttga---ggtaataaaagttgttatgcagcataccaaaagttagggacggttttttttt |
20565861 |
T |
|
| Q |
123 |
nnn----aaagaaaaagttagcgacgattaacatgtcataatttactttttaaatgcacacgttaaagtatatattaatgtgattaacttgtcgtattac |
218 |
Q |
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|||||||||||||| |||| |||||||||||| |||| ||||||||||||||||||||||||||||||| ||| || |||||| ||| ||||| |
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| T |
20565860 |
ttttttgaaagaaaaagttagggacggttaacatgtcattattttctttttaaatgcacacgttaaagtatatattgatgggactaacttttcggattac |
20565761 |
T |
|
| Q |
219 |
tatcattagagtcattgacttcttaatag-tactttcgtcnnnnnnnnnnttataaataagtgacatgtacacatacagaacctacttagacactctttt |
317 |
Q |
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|||||||||||||||||| || ||||||| ||| |||||| ||||||||||||||||| |||||||| || |||||||||||||||||||| |
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| T |
20565760 |
tatcattagagtcattgaatttttaataggtacattcgtcaaaaaaaaaattataaataagtgacatatacacatatagtacctacttagacactctttt |
20565661 |
T |
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| Q |
318 |
tcgtttattatcattgtcaatgctttaaatgtagatttatggatgtgaatacgaggttaa |
377 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
20565660 |
tcgtttattatcattgtcaatgatttaaatgtagatttatggatgtgaatgcgaggttaa |
20565601 |
T |
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