View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_low_28 (Length: 391)
Name: NF18704_low_28
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 159 - 378
Target Start/End: Complemental strand, 37870430 - 37870219
Alignment:
| Q |
159 |
ccaaaataggaacatgagaatggaaacgcaacaataa----taatgagaaaacgataatatcgtacatacataaaacggacgaaacaacggaaaagaaag |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37870430 |
ccaaaataggaacatgagaatggaaacgcaacaataaataataatgagaaaacgataatatcgtacatacataaaacgga------------aaagaaag |
37870343 |
T |
|
| Q |
255 |
atgagagaaaaacaaaagagtggattttgtgtaccaaggagagtaccgcgtctttggttttggaaggtttaggtccaggttttcggcgcatggtgcagga |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
|
|
| T |
37870342 |
atgagagaaaaacaaaagagtggattttgtgtaccaaggagagtaccgcgtctttggttttggaaggtttaggtccaggttttcggcccatggtgcagaa |
37870243 |
T |
|
| Q |
355 |
gaggaaagaaatgtacaacaccct |
378 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
37870242 |
gaggaaagaaaagtacaacaccct |
37870219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 37870565 - 37870455
Alignment:
| Q |
18 |
aatgcatgcaaccacaaaacgaaagctcttgtatttctcctaacattcgttcatgcaaacattgaaaatcagaaaaccctacctaaaccatagccctaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37870565 |
aatgcatgcaaccacaaaacgaaagctcttgtatttctcctaacattcgttcatgcaaacattgaaaatcagaaaaccctacctaaaccatagccctaaa |
37870466 |
T |
|
| Q |
118 |
catgatccatg |
128 |
Q |
| |
|
||||||||||| |
|
|
| T |
37870465 |
catgatccatg |
37870455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University