View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_29 (Length: 390)
Name: NF18704_low_29
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Complemental strand, 36281235 - 36280876
Alignment:
| Q |
14 |
caatattcatatagcagtaaaatatatacttatacttacatctaggacatttgaaattatttgaacatggaagcatcccctgtctttcaagaatcaagga |
113 |
Q |
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| T |
36281235 |
caatattcatatagcagtaaaatatatacttatacttacatctaggacatttgaaattatttgaacatggaagcatcccctgtctttcaagaatcaagga |
36281136 |
T |
|
| Q |
114 |
aaacggtgaatcagtgatatcactaattgaactccaattttcaacatactttactcaaataattagaacaaaggaaaacttcaaatattgggtcttacaa |
213 |
Q |
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| T |
36281135 |
aaacggtgaatcagtgatatcactagttgaactccaattttcaacatactttactcaaataattagaacaaaggaaaaattcaaatattgggtcttacaa |
36281036 |
T |
|
| Q |
214 |
tgcattggtccctgaggagctccggaacaagtttaggtttaagttcctgattaagttaatcaaggtgaaataatcatcagttttacaacaacatcaaact |
313 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
36281035 |
tgcattggtccctaaggagctccggaacaagtttaggtttaagttcctgattcagttaatcaaggtgaaataatcatcagttttacaacaacgtcaaact |
36280936 |
T |
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| Q |
314 |
tgaaaacactgaggaataacaataatgttatttatacaccattttcattacactgtattt |
373 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36280935 |
tgaaaacactgaggaataacaataatgttatttatacaccattttcattacactgtattt |
36280876 |
T |
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