View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_3 (Length: 747)
Name: NF18704_low_3
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 623; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 623; E-Value: 0
Query Start/End: Original strand, 18 - 736
Target Start/End: Complemental strand, 2066779 - 2066061
Alignment:
| Q |
18 |
gttgcttactgcgtaatggtatttggtcctcccttcttgctcttattaatcctactgttagttttgttttggttgagtttgcttttttccaatatctaga |
117 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
2066779 |
gttgcttactgcgtaatggtatttggccctcccttcttgctcttattaatcttactgttagttttgctttggttgagtttgcttttttccaatatctaga |
2066680 |
T |
|
| Q |
118 |
tggctgaccaacaaaagcaaatttttggggtgactttgtgaagtatttggaagcactgaaataataaggtttggaacaatattattgaatctgtttcaaa |
217 |
Q |
| |
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|||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||| ||||| || |
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| T |
2066679 |
tggccgaccaacaaaagcaaatttttggggtgattttgtgaagtatttggaagcactaaaataataaggtttggaacaatatcattaaatttgttttaat |
2066580 |
T |
|
| Q |
218 |
gatttgtgaactgacaaacactcttttaaatagttgggtcaatgtcaaacttatcaagacccacgttcttaatcggactcatcaacctgagacggatgct |
317 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2066579 |
gatttgtgaactgacgaacactcttttaaatagttgagtcaatgtcaaacttatcaagacccacgttcttaatcggactcatcaacctgagacggatgct |
2066480 |
T |
|
| Q |
318 |
tgacacaaaccaaatgcagatcactataaatgtaatgtggatgctctttctctcatgcgttaaacaaagttggtcttggtatgtgcattcaggatgatga |
417 |
Q |
| |
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||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2066479 |
tgacacaaaccaaatgcaggtcgctataaatgtaatgtggatgctctttctctcatgcgttaaacaaagttggtcttggtatgtgcattcaggatgatga |
2066380 |
T |
|
| Q |
418 |
ggatcgttttgtgttggcttaaagagaggggttatcattgttacttgatgttgatttaggagagacactcaaacaagtgtctgctcttcaatggatatat |
517 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
2066379 |
ggatcgttttgtgttggcttaaagagagtgattatcattgttacttgatgttgatttaggagagacactcaaacaagtatatgctcttcaatggatatat |
2066280 |
T |
|
| Q |
518 |
gaccttcagctaaccaatgtggattttgagatgaactcaaagatgttggtacacagtatatatggtgatacactcagtgtcttagattttcatcaattat |
617 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| |
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| T |
2066279 |
gatcttcagctaaccaatgtggattttgagatgaactcaaagatgttggtacacagtatatatgatcatacattcagtgtcttagattttcatcaattat |
2066180 |
T |
|
| Q |
618 |
taatgtttgtcggcgcatactttcttctgatttagcaacctctgataccagatttattagaagacaaaatcaatgaagaaactcagagtttagctaggat |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2066179 |
taatgtttgtcggcgcatactttcttctgatttagcaacctctgatgccagatttattagaagacaaaatcaatgaagaaactcagagtttagctaggat |
2066080 |
T |
|
| Q |
718 |
aactccaagtcatgatgat |
736 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
2066079 |
aactccaagtcatgatgat |
2066061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 457 - 660
Target Start/End: Original strand, 43233918 - 43234121
Alignment:
| Q |
457 |
gttacttgatgttgatttaggagagacactcaaacaagtgtctgctcttcaatggatatatgaccttcagctaaccaatgtggattttgagatgaactca |
556 |
Q |
| |
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|||||||| ||||| ||| |||||| |||||| || |||||||||||||||| ||| ||| | || |||| ||||||||||| ||||||| ||||| |
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| T |
43233918 |
gttacttgttgttggtttgggagaggcactcagactgttgtctgctcttcaatgaatacatggcttttagctggtcaatgtggattgtgagatggactca |
43234017 |
T |
|
| Q |
557 |
aagatgttggtacacagtatatatggtgatacactcagtgtcttagatttt-catcaattattaatgtttgtcggcgcatactttcttctgatttagcaa |
655 |
Q |
| |
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||| || | ||| | |||| |||||| ||||| || ||||| | ||||| | ||||||||| ||| ||||||| | |||||| |||||||||| || |
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| T |
43234018 |
aaggtggttgtagcccgtatctatggtcatacattcgttgtctcatattttgcttcaattatt-atgattgtcggtacctactttattctgatttaaaaa |
43234116 |
T |
|
| Q |
656 |
cctct |
660 |
Q |
| |
|
||||| |
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|
| T |
43234117 |
cctct |
43234121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 342 - 559
Target Start/End: Complemental strand, 15077183 - 15076965
Alignment:
| Q |
342 |
tataaatgtaatgtgga-tgctctttctctcatgcgttaaacaaagttggtcttggtatgtgcattcaggatgatgaggatcgttttgtgttggcttaaa |
440 |
Q |
| |
|
||||||||||||||| | | |||||||||||||| ||||||||||||||| ||| |||| | |||| |||||||| | |||||||||||||||| || |
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|
| T |
15077183 |
tataaatgtaatgtgaacttctctttctctcatgtgttaaacaaagttggcctttgtatatatattcgagatgatgaaggtcgttttgtgttggctgaag |
15077084 |
T |
|
| Q |
441 |
gagaggggttatcattgttacttgatgttgatttaggagagacactcaaacaagtgtctgctcttcaatggatatatgaccttcagctaaccaatgtgga |
540 |
Q |
| |
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||| | ||||||||||||||||||||||||| |||||| |||||| || | | ||||||||| ||| | |||||||||||| || |||||| | |
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| T |
15077083 |
tggagtagctatcattgttacttgatgttgatttgggagaggcactcagactgttttttgctcttcagtgggttcgtgaccttcagctgacaaatgtgca |
15076984 |
T |
|
| Q |
541 |
ttttgagatgaactcaaag |
559 |
Q |
| |
|
|||||||||| |||||||| |
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|
| T |
15076983 |
ttttgagatggactcaaag |
15076965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 610 - 656
Target Start/End: Complemental strand, 2806850 - 2806804
Alignment:
| Q |
610 |
tcaattattaatgtttgtcggcgcatactttcttctgatttagcaac |
656 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
2806850 |
tcaattattaatgattgtcggcgcttactttcttctgatttagcaac |
2806804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 610 - 684
Target Start/End: Complemental strand, 16349657 - 16349583
Alignment:
| Q |
610 |
tcaattattaatgtttgtcggcgcatactttcttctgatttagcaacctctgataccagatttattagaagacaa |
684 |
Q |
| |
|
||||||||||||| |||||||| |||||||| |||| |||| ||||||||||| |||||| |||| |||||| |
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| T |
16349657 |
tcaattattaatgattgtcggcacatactttattctaatttgacaacctctgatgttagatttgttaggagacaa |
16349583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 8e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 344 - 430
Target Start/End: Original strand, 28031180 - 28031267
Alignment:
| Q |
344 |
taaatgtaatgtggatg-ctctttctctcatgcgttaaacaaagttggtcttggtatgtgcattcaggatgatgaggatcgttttgtg |
430 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||||||||| |
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| T |
28031180 |
taaatataatgtggatgtctctttctctcatgcgttaaacaaagtcgaccttggtatgtgtattcgggatgatgaggatcgttttgtg |
28031267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 304 - 555
Target Start/End: Original strand, 28809341 - 28809592
Alignment:
| Q |
304 |
ctgagacggatgcttgacacaaaccaaatgcagatcactataaatgtaatgtggatg-ctctttctctcatgcgttaaacaaagttggtcttggtatgtg |
402 |
Q |
| |
|
||||||||| || || |||||||||| || | ||||||||||||||||||||||| |||||||||||||| ||| ||||||||| ||||||| || |
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|
| T |
28809341 |
ctgagacggttgactggcacaaaccaactgggggtcactataaatgtaatgtggatgattctttctctcatgcactaagcaaagttggcattggtatatg |
28809440 |
T |
|
| Q |
403 |
cattcaggatgatgaggatcgttttgtgttggcttaaagagaggggttatcattgttacttgatgttgatttaggagagacactcaaacaagtgtctgct |
502 |
Q |
| |
|
||| ||| ||||| | |||||||||||| ||| ||| |||| | || || ||||| ||||||||||| || ||||||||| || | |||||||| |
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|
| T |
28809441 |
tattagggaagatgatggtcgttttgtgttagctaaaacagagtagctagcaacattactcgatgttgatttgggggagacactc-gactattgtctgct |
28809539 |
T |
|
| Q |
503 |
cttcaatggatatatgaccttcagctaaccaatgtggattttgagatgaactc |
555 |
Q |
| |
|
||||| |||| | ||| ||||||| || |||||| ||||||| ||| |||| |
|
|
| T |
28809540 |
cttcagtggaaacgtgatcttcagccaattaatgtgaattttgaaatggactc |
28809592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 413 - 488
Target Start/End: Original strand, 27763941 - 27764016
Alignment:
| Q |
413 |
gatgaggatcgttttgtgttggcttaaagagaggggttatcattgttacttgatgttgatttaggagagacactca |
488 |
Q |
| |
|
||||||| ||||||||| |||||| ||| |||| | |||||||||||||||||||||||||||| ||||||||| |
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|
| T |
27763941 |
gatgagggtcgttttgtattggctaaaacagagtgactatcattgttacttgatgttgatttagggaagacactca |
27764016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 495 - 684
Target Start/End: Original strand, 34898897 - 34899087
Alignment:
| Q |
495 |
tgtctgctcttcaatggatatatgaccttcagctaaccaatgtggattttgagatgaactcaaagatgttggtacacagtatatatggtgatacactcag |
594 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||| ||| |||||| ||||| | ||||||||| | ||||| | ||||| |||||| ||| ||| |
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|
| T |
34898897 |
tgtctgctcatcaacggatacatgaccttcagctcgccattgtggaatttgaaacgaactcaaatgtagtggtagagagtatctatggtcgtacgctcga |
34898996 |
T |
|
| Q |
595 |
tgtcttagatttt-catcaattattaatgtttgtcggcgcatactttcttctgatttagcaacctctgataccagatttattagaagacaa |
684 |
Q |
| |
|
||||| ||||||| | ||||||||| ||| ||||||||| ||||||||| ||||||| |||| |||||| || |||||||| |||||| |
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|
| T |
34898997 |
tgtctcagattttgcttcaattattgatggttgtcggcgtctactttcttttgatttaacaacttctgatgttaggtttattaggagacaa |
34899087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 30797477 - 30797410
Alignment:
| Q |
129 |
caaaagcaaatttttggggtgactttgtgaagtatttggaagcactgaaataataaggtttggaacaa |
196 |
Q |
| |
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||||||||||||||| | |||||| | || |||||||||||||| |||| |||||||| |||||||| |
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|
| T |
30797477 |
caaaagcaaatttttagtgtgactctttggagtatttggaagcatcgaaacaataaggtatggaacaa |
30797410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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