View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_low_30 (Length: 388)

Name: NF18704_low_30
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_low_30
NF18704_low_30
[»] chr6 (7 HSPs)
chr6 (223-375)||(30714811-30714963)
chr6 (223-329)||(30733147-30733254)
chr6 (70-142)||(30714654-30714728)
chr6 (94-140)||(11785354-11785401)
chr6 (93-140)||(9954546-9954594)
chr6 (104-140)||(18272354-18272390)
chr6 (223-267)||(32853033-32853077)
[»] chr2 (9 HSPs)
chr2 (268-374)||(27760066-27760172)
chr2 (226-267)||(22195761-22195802)
chr2 (223-269)||(3091879-3091925)
chr2 (93-138)||(6365184-6365230)
chr2 (223-261)||(21490796-21490834)
chr2 (84-140)||(4738597-4738654)
chr2 (92-140)||(36909868-36909917)
chr2 (94-142)||(43994036-43994085)
chr2 (83-126)||(22353203-22353247)
[»] chr7 (9 HSPs)
chr7 (94-141)||(38096463-38096511)
chr7 (90-140)||(19426575-19426626)
chr7 (94-140)||(41966331-41966378)
chr7 (223-269)||(37351877-37351923)
chr7 (223-269)||(43445545-43445591)
chr7 (91-141)||(6110001-6110053)
chr7 (94-141)||(25940656-25940704)
chr7 (89-140)||(33212036-33212088)
chr7 (223-267)||(44894363-44894407)
[»] chr1 (6 HSPs)
chr1 (93-140)||(39669804-39669852)
chr1 (223-269)||(37843322-37843368)
chr1 (223-269)||(45740431-45740477)
chr1 (92-140)||(31427982-31428031)
chr1 (223-267)||(2362507-2362551)
chr1 (92-120)||(23369145-23369173)
[»] chr8 (9 HSPs)
chr8 (102-141)||(43873715-43873754)
chr8 (223-269)||(5502500-5502546)
chr8 (223-268)||(1179514-1179559)
chr8 (95-131)||(20896028-20896064)
chr8 (223-269)||(295684-295730)
chr8 (223-269)||(27776299-27776345)
chr8 (93-140)||(38504168-38504216)
chr8 (94-141)||(39021467-39021515)
chr8 (89-140)||(45101390-45101442)
[»] chr5 (3 HSPs)
chr5 (94-140)||(38500942-38500989)
chr5 (101-138)||(24463258-24463295)
chr5 (93-140)||(2050925-2050973)
[»] chr4 (14 HSPs)
chr4 (91-140)||(10994177-10994227)
chr4 (93-141)||(38133978-38134027)
chr4 (226-267)||(38952830-38952871)
chr4 (223-268)||(44166047-44166092)
chr4 (93-138)||(12074178-12074224)
chr4 (102-140)||(45548809-45548847)
chr4 (223-256)||(18500025-18500058)
chr4 (223-268)||(32713984-32714029)
chr4 (102-138)||(169529-169565)
chr4 (96-140)||(6239382-6239426)
chr4 (93-140)||(40409191-40409239)
chr4 (94-133)||(43168746-43168786)
chr4 (223-271)||(47471938-47471986)
chr4 (93-140)||(47998592-47998640)
[»] chr3 (9 HSPs)
chr3 (94-140)||(108430-108477)
chr3 (94-140)||(5398917-5398964)
chr3 (93-140)||(14992072-14992119)
chr3 (94-140)||(35376576-35376623)
chr3 (94-140)||(47849671-47849718)
chr3 (94-140)||(53932416-53932463)
chr3 (102-140)||(20893267-20893305)
chr3 (223-269)||(52727335-52727381)
chr3 (89-140)||(51464297-51464349)
[»] scaffold0026 (1 HSPs)
scaffold0026 (223-268)||(113763-113808)
[»] scaffold0032 (1 HSPs)
scaffold0032 (93-140)||(17434-17482)


Alignment Details
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 223 - 375
Target Start/End: Original strand, 30714811 - 30714963
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactcttgtaaatatacagtgcaatatgttgatgagagttggactaaatcagagaaagaa 322  Q
    ||||||||||| ||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30714811 ttgtcacaaaagttatctcaaatgattgttcaaatatcactactcttgtaaatatacagtccaatatgttgatgagagttggactaaatcagagaaagaa 30714910  T
Q  323 gagagagtatttaagacatatatggacctcaaatacatgaaaaattaggccct 375  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30714911 gagagagtatttaagacatatatggacctcaaatacatgaaaaattaggccct 30714963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 223 - 329
Target Start/End: Original strand, 30733147 - 30733254
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactcttgtaaatatacagtgcaatatgttgatgagagttggactaaatcagagaaaga- 321  Q
    ||||||||||| || ||||||||  |||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| |||| ||||||||| |||     
T  30733147 ttgtcacaaaagttgtctcaaatggttgtttaaatatcactactcgtgtaaatatacagtccaatatgttgacgagagttagactgaatcagagagagag 30733246  T
Q  322 agagagag 329  Q
    ||||||||    
T  30733247 agagagag 30733254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 30714654 - 30714728
Alignment:
Q  70 tatattgtgttttt-atttctaaatagagaaat-atatttgtacaaccattttgtgacagttttttgacaactca 142  Q
    |||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  30714654 tatattgtgttttttatttctaaatagagaaatgatatttgtacaatcattttgtgacagctttttgacaactca 30714728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 11785354 - 11785401
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  11785354 agagaaatgatatttgtacaaccattttgtgacaattttttgacaact 11785401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 9954546 - 9954594
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  9954546 tagagaaatgatatttgtacaaccaatttgtgacaactttttgacaact 9954594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 18272354 - 18272390
Alignment:
Q  104 atttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  18272354 atttgtacaaccattttgtgacaatttttagacaact 18272390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 32853077 - 32853033
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactc 267  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||    
T  32853077 ttgtcacaaaaattgtatcaaatagttgttcaaatatcactactc 32853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 27760066 - 27760172
Alignment:
Q  268 ttgtaaatatacagtgcaatatgttgatgagagttggactaaatcagagaaagaagagagagtatttaagacatatatggacctcaaatacatgaaaaat 367  Q
    ||||||||||| ||| ||||| ||||  ||||||||||||||||   ||||| || ||||| |||| | |||||||||| ||||||||| ||||| | ||    
T  27760066 ttgtaaatatatagttcaataagttgcagagagttggactaaattgtagaaataaaagagaatattgaggacatatatgaacctcaaattcatgatacat 27760165  T
Q  368 taggccc 374  Q
    |||||||    
T  27760166 taggccc 27760172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 22195761 - 22195802
Alignment:
Q  226 tcacaaaaattatctcaaataattgtttaaatatcactactc 267  Q
    |||||||||||||||||||||||| || ||||||||||||||    
T  22195761 tcacaaaaattatctcaaataattattcaaatatcactactc 22195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 3091879 - 3091925
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    ||||||||||| || | ||||||||||||| ||||||||||||||||    
T  3091879 ttgtcacaaaagttgtatcaaataattgttcaaatatcactactctt 3091925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 138
Target Start/End: Original strand, 6365184 - 6365230
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaa 138  Q
    ||||||||| ||||||||||||||| ||||||||| |||||||||||    
T  6365184 tagagaaatgatatttgtacaaccactttgtgacaattttttgacaa 6365230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 21490796 - 21490834
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatca 261  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  21490796 ttgtaacaaaaattatctcaaataattgttcaaatatca 21490834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 140
Target Start/End: Complemental strand, 4738654 - 4738597
Alignment:
Q  84 atttctaaatagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||| |||| |||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  4738654 atttataaaaagagaaatgatatttgtacaaccactttgtgacaactttttgacaact 4738597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 36909917 - 36909868
Alignment:
Q  92 atagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||||| |||||||||||||||||||||||||  |||| |||||||    
T  36909917 atagagaaatgatatttgtacaaccattttgtgacaacttttggacaact 36909868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 43994085 - 43994036
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaactca 142  Q
    |||||||| ||| ||||||||||||||| ||||| |||||||||||||||    
T  43994085 agagaaatgatagttgtacaaccattttatgacaattttttgacaactca 43994036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 22353247 - 22353203
Alignment:
Q  83 tatttctaaatagagaaat-atatttgtacaaccattttgtgaca 126  Q
    |||||| |||||||||||| |||||||||||| ||||||||||||    
T  22353247 tatttccaaatagagaaatgatatttgtacaatcattttgtgaca 22353203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 38096511 - 38096463
Alignment:
Q  94 agagaaata-tatttgtacaaccattttgtgacagttttttgacaactc 141  Q
    ||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  38096511 agagaaataatatttgtacaaccattttgtgacaattttttgacaactc 38096463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 140
Target Start/End: Original strand, 19426575 - 19426626
Alignment:
Q  90 aaatagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||||||| |||||||||||||||||||||||||  ||||||||||||    
T  19426575 aaatagagaaatgatatttgtacaaccattttgtgacaactttttgacaact 19426626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 41966331 - 41966378
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  41966331 agagaaatgatatttgtacaaccactttgtgacaattttttgacaact 41966378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 37351923 - 37351877
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    ||||||||||| |||| |||||| |||||| ||||||||||||||||    
T  37351923 ttgtcacaaaagttatatcaaatgattgttcaaatatcactactctt 37351877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 43445545 - 43445591
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    |||||||||||||| | |||||| |||||| ||||||||||||||||    
T  43445545 ttgtcacaaaaattgtatcaaatgattgttcaaatatcactactctt 43445591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Complemental strand, 6110053 - 6110001
Alignment:
Q  91 aatagagaaat-atatttgtacaaccattttgtgacagttttt-tgacaactc 141  Q
    ||||||||||| ||| ||||||||||||||||||||| ||||| |||||||||    
T  6110053 aatagagaaatgataattgtacaaccattttgtgacaatttttgtgacaactc 6110001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 25940704 - 25940656
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaactc 141  Q
    |||||||| ||||||||||||||||||||| ||| ||||| ||||||||    
T  25940704 agagaaatgatatttgtacaaccattttgtaacaatttttagacaactc 25940656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 33212036 - 33212088
Alignment:
Q  89 taaatagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||| ||||||| ||||||||||||||||||| | ||| |||||||||||||    
T  33212036 taaattgagaaatgatatttgtacaaccattttctaacaattttttgacaact 33212088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 44894407 - 44894363
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactc 267  Q
    |||||||||||||||||||||||   |||| ||||||||||||||    
T  44894407 ttgtcacaaaaattatctcaaatggatgttcaaatatcactactc 44894363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 39669804 - 39669852
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  39669804 tagagaaatgatatttgtacaaccattttgtgacaattttttgacaact 39669852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 37843368 - 37843322
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    |||||||| ||||||| ||||||| ||||| ||||||||||||||||    
T  37843368 ttgtcacacaaattatatcaaatagttgttcaaatatcactactctt 37843322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 45740477 - 45740431
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    |||||| ||||||||| |||||| |||||| ||||||||||||||||    
T  45740477 ttgtcataaaaattatttcaaatgattgttcaaatatcactactctt 45740431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 31428031 - 31427982
Alignment:
Q  92 atagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||||| ||||||||||||||| ||||||||| ||| |||||||||    
T  31428031 atagagaaatgatatttgtacaaccactttgtgacaatttcttgacaact 31427982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 267
Target Start/End: Original strand, 2362507 - 2362551
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactc 267  Q
    |||||||||||||| | ||||||| ||||| ||||||||||||||    
T  2362507 ttgtcacaaaaattgtatcaaatagttgttcaaatatcactactc 2362551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 120
Target Start/End: Original strand, 23369145 - 23369173
Alignment:
Q  92 atagagaaatatatttgtacaaccatttt 120  Q
    |||||||||||||||||||||||||||||    
T  23369145 atagagaaatatatttgtacaaccatttt 23369173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 43873754 - 43873715
Alignment:
Q  102 atatttgtacaaccattttgtgacagttttttgacaactc 141  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  43873754 atatttgtacaaccattttgtgacaattttttgacaactc 43873715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 5502500 - 5502546
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    |||||||||||||||| |||||| |||||| ||||||||||||||||    
T  5502500 ttgtcacaaaaattatatcaaatgattgttcaaatatcactactctt 5502546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 1179514 - 1179559
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactct 268  Q
    ||||||||||| |||| ||||||| |||||||||||||||||||||    
T  1179514 ttgtcacaaaagttatatcaaatagttgtttaaatatcactactct 1179559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 131
Target Start/End: Complemental strand, 20896064 - 20896028
Alignment:
Q  95 gagaaatatatttgtacaaccattttgtgacagtttt 131  Q
    |||||||||||||||||||||||||||||||| ||||    
T  20896064 gagaaatatatttgtacaaccattttgtgacaatttt 20896028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 295684 - 295730
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    ||||||||||| |||||||||||| ||||| ||||| ||||||||||    
T  295684 ttgtcacaaaagttatctcaaatagttgttcaaataacactactctt 295730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 27776299 - 27776345
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    ||||||| |||||| ||||||||||||| | ||||||||||||||||    
T  27776299 ttgtcaccaaaattgtctcaaataattgatcaaatatcactactctt 27776345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 38504168 - 38504216
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||| ||||||||||||||||||||  ||| |||||||||||||    
T  38504168 tagagaaatgatatttgtacaaccattttgctacaattttttgacaact 38504216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 141
Target Start/End: Complemental strand, 39021515 - 39021467
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaactc 141  Q
    |||||||| ||||||||||||||||||||||| |  |||||||||||||    
T  39021515 agagaaatgatatttgtacaaccattttgtgataactttttgacaactc 39021467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 45101390 - 45101442
Alignment:
Q  89 taaatagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||| |||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  45101390 taaaaagagaaatgatatttgtacaaccactttgtgacaactttttgacaact 45101442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 38500942 - 38500989
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  38500942 agagaaatgatatttgtacaaccattttgtgacaattttttgacaact 38500989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 24463295 - 24463258
Alignment:
Q  101 tatatttgtacaaccattttgtgacagttttttgacaa 138  Q
    |||||||||||||||||||||| ||| |||||||||||    
T  24463295 tatatttgtacaaccattttgtaacaattttttgacaa 24463258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 2050925 - 2050973
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| |||||||    
T  2050925 tagagaaatgatatttgtacaaccattttgtaacaatttttggacaact 2050973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 140
Target Start/End: Complemental strand, 10994227 - 10994177
Alignment:
Q  91 aatagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||||| ||||||||||||||||||||||||| | |||||||||||    
T  10994227 aatagagaaatgatatttgtacaaccattttgtgacaatcttttgacaact 10994177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 141
Target Start/End: Original strand, 38133978 - 38134027
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaactc 141  Q
    ||||||||| ||||||||||||||| ||||||||| ||||||||||||||    
T  38133978 tagagaaattatatttgtacaaccactttgtgacaattttttgacaactc 38134027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 226 - 267
Target Start/End: Original strand, 38952830 - 38952871
Alignment:
Q  226 tcacaaaaattatctcaaataattgtttaaatatcactactc 267  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
T  38952830 tcacaaaaattgtatcaaataattgtttaaatatcactactc 38952871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 44166047 - 44166092
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactct 268  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||    
T  44166047 ttgttacaaaaattatatcaaataattgtttaaatatcacaactct 44166092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 138
Target Start/End: Complemental strand, 12074224 - 12074178
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaa 138  Q
    ||||||||| ||||||||||||||||||| ||||| |||||||||||    
T  12074224 tagagaaatgatatttgtacaaccattttatgacaattttttgacaa 12074178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 45548847 - 45548809
Alignment:
Q  102 atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  45548847 atatttgtacaaccattttgtgataattttttgacaact 45548809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 18500025 - 18500058
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaa 256  Q
    |||||| |||||||||||||||||||||||||||    
T  18500025 ttgtcaaaaaaattatctcaaataattgtttaaa 18500058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 32713984 - 32714029
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactct 268  Q
    ||||||| |||||||||||||||  ||||| |||||||||||||||    
T  32713984 ttgtcaccaaaattatctcaaatcgttgttcaaatatcactactct 32714029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 102 - 138
Target Start/End: Complemental strand, 169565 - 169529
Alignment:
Q  102 atatttgtacaaccattttgtgacagttttttgacaa 138  Q
    |||||||||||||||||||||||||  ||||||||||    
T  169565 atatttgtacaaccattttgtgacaactttttgacaa 169529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 6239382 - 6239426
Alignment:
Q  96 agaaatatatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||||||||||||||||||||  | | |||||||||||||    
T  6239382 agaaatatatttgtacaaccattttgcaataattttttgacaact 6239426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Complemental strand, 40409239 - 40409191
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||| ||||||||||| | | |||||||||||||||||||||||    
T  40409239 tagagaaatgatatttgtacatctactttgtgacagttttttgacaact 40409191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 133
Target Start/End: Complemental strand, 43168786 - 43168746
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagtttttt 133  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  43168786 agagaaatgatatttgtacaaccattttgtgacaatttttt 43168746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 271
Target Start/End: Original strand, 47471938 - 47471986
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactcttgt 271  Q
    ||||||||||||||||  ||||||||| || ||||||||||| ||||||    
T  47471938 ttgtcacaaaaattattgcaaataattattcaaatatcactattcttgt 47471986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 47998592 - 47998640
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||| ||||||||||||||||||||| |||  ||||||||||||    
T  47998592 tagagaaatgatatttgtacaaccattttgtaacaactttttgacaact 47998640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 108430 - 108477
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  108430 agagaaatgatatttgtacaaccactttgtgacaattttttgacaact 108477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 5398917 - 5398964
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||||||    
T  5398917 agagaaatgatatttgtacaaccactttgtgacaattttttgacaact 5398964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 14992072 - 14992119
Alignment:
Q  93 tagagaaatatatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||||||||||||||||||||||||  ||| |||||||| ||||    
T  14992072 tagagaaatatatttgtacaaccattttgctacaattttttgataact 14992119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 35376623 - 35376576
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  35376623 agagaaatgatatttgtacaaccattttgtgacaatttttagacaact 35376576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Original strand, 47849671 - 47849718
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||| ||||||||||||||||||||||| | |||||||||||||    
T  47849671 agagaaatgatatttgtacaaccattttgtgataattttttgacaact 47849718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 140
Target Start/End: Complemental strand, 53932463 - 53932416
Alignment:
Q  94 agagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    |||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  53932463 agagaaatgatatttgtacaaccattttgtgacaatttttggacaact 53932416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 102 - 140
Target Start/End: Complemental strand, 20893305 - 20893267
Alignment:
Q  102 atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  20893305 atatttgtacaaccattttgtgataattttttgacaact 20893267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 269
Target Start/End: Complemental strand, 52727381 - 52727335
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactctt 269  Q
    |||||||||||||| | |||||||  |||||||||||||||||||||    
T  52727381 ttgtcacaaaaattgtttcaaatagatgtttaaatatcactactctt 52727335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Complemental strand, 51464349 - 51464297
Alignment:
Q  89 taaatagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||| ||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  51464349 taaattgagaaatgatatttgtacaaccactttgtgacaactttttgacaact 51464297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 113763 - 113808
Alignment:
Q  223 ttgtcacaaaaattatctcaaataattgtttaaatatcactactct 268  Q
    |||||||||||||| | |||||||  ||||||||||||||||||||    
T  113763 ttgtcacaaaaattgtttcaaatagatgtttaaatatcactactct 113808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 140
Target Start/End: Original strand, 17434 - 17482
Alignment:
Q  93 tagagaaat-atatttgtacaaccattttgtgacagttttttgacaact 140  Q
    ||||||||| ||||||||||||||||||||| ||| ||||| |||||||    
T  17434 tagagaaatgatatttgtacaaccattttgtcacaatttttagacaact 17482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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