View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_low_35 (Length: 348)
Name: NF18704_low_35
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_35 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 331
Target Start/End: Original strand, 6880170 - 6880488
Alignment:
| Q |
15 |
atgaactcaatatagacaaagaaagtggatgaatactttcaaggattataacttcattctacaataacac--cattagagagctaatgcaatgaggcatg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
6880170 |
atgaactcaatatagacaaagaaagtggatgaatactttcaaggaatttaacttcattctacaataacacaccattagagagctaatgcaatgaggcatg |
6880269 |
T |
|
| Q |
113 |
ctcttattcaacaaaggattcttgcatcctctggctaagcaataagttgttcttgaaaaagtttcattatctggaattagatgtagaattttcatcagaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6880270 |
ctcttattcaacaaaggattcttgcatcctctggctaagcaataagttgttcttgaaaaagtttcattatctggaattagatgtagaattttcatcagaa |
6880369 |
T |
|
| Q |
213 |
ttcaggagaattaagattagaatgatcattatttctaatggattaattgagaatatccagaaccatcattttgattataaacttctacaagaaaagaggc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6880370 |
ttcaggagaattaagattagaatgatcattatttctaatggattaattgagaatatccagaaccatcattttgattataaacttctacaagaaaagaggc |
6880469 |
T |
|
| Q |
313 |
agttaattgtggaaaggaa |
331 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
6880470 |
aattaattgtggaaaggaa |
6880488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University