View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_low_36 (Length: 333)
Name: NF18704_low_36
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_36 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 7191351 - 7191666
Alignment:
| Q |
11 |
catcaagaacgccattaatcaatagatttagaccttcaatgcaagcttctgagctgcaagagcttcagcctctagagttggttcccacaataatgtactc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7191351 |
catctagaacgccattaatcaatagatttagaccttcaatgcaagcttctgagctgcaagagcttcagcctctagagttggttcccacaataatgtactc |
7191450 |
T |
|
| Q |
111 |
tctgccaataatgctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaaaacagtagcgaaggtaaacaaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7191451 |
tctgccaataatgctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaaaacagtagcgaaggtaaacaaca |
7191550 |
T |
|
| Q |
211 |
tgtatatggtaacacttacagattattaatgaggaggtccagcattcgaactctgaatgttaacaatgacatggaattattgttggtgattgtgactcac |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7191551 |
tgtatatggtaacacttacagattattaatgaggaggtccagcattcgaactctgaatgttaacaatgacatggaattattgttggtgattgtgactcac |
7191650 |
T |
|
| Q |
311 |
cttttccattcttctc |
326 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
7191651 |
cttttccattcttctc |
7191666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 22 - 208
Target Start/End: Original strand, 7202593 - 7202779
Alignment:
| Q |
22 |
ccattaatcaatagatttagaccttcaatgcaagcttctgagctgcaagagcttcagcctctagagttggttcccacaataatgtactctctgccaataa |
121 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7202593 |
ccattaatcaatagatttagactttcaatgcaatcttctgagctgcaagagcttcagcctctagagttggttcccacaataatgtactctctgccaataa |
7202692 |
T |
|
| Q |
122 |
tgctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaaaacagtagcgaaggtaaacaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
7202693 |
ggctgttaccacatatggatccatgttcgaagccggacgcctgtcttccaagtaacctacaatcaaaacagaagcaaaggtaaacaa |
7202779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 29 - 187
Target Start/End: Original strand, 7197700 - 7197858
Alignment:
| Q |
29 |
tcaatagatttagaccttcaatgcaagcttctgagctgcaagagcttcagcctctagagttggttcccacaataatgtactctctgccaataatgctgtt |
128 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7197700 |
tcaatagatttagaccttcaatgcaagctactgagctgcaagaacttcggcctctagagtttgttcccacaataatgtactctctgccaataatgttgtt |
7197799 |
T |
|
| Q |
129 |
accacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaa |
187 |
Q |
| |
|
|||||||||||||||||||| ||| || | | |||||||| |||||||||| |||||| |
|
|
| T |
7197800 |
accacatatggatccatgttcgaaaccaggggcctgtcttccaagtaacctacaatcaa |
7197858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 26286866 - 26287056
Alignment:
| Q |
24 |
attaatcaatagatttagaccttcaatgcaagcttctgagctgcaaga-gcttcagcctctagagttggttcccacaataatgtactctctgccaataat |
122 |
Q |
| |
|
|||||| ||||| |||||||||||||||| || ||||||| | | | |||||| ||||||||||||||| |||||||| ||| |||||||||| |||| |
|
|
| T |
26286866 |
attaattaataggtttagaccttcaatgcgagtttctgagattcctggtgcttcaacctctagagttggtttccacaatactgttctctctgccagtaat |
26286965 |
T |
|
| Q |
123 |
gctgttaccacatatggatccatgtttgaagccggacgtctgtcttctaagtaacctataatcaaaacagtagcgaaggtaaacaacatgt |
213 |
Q |
| |
|
||||||||||||||||||||||||| ||||| | ||| | |||| || ||||||| |||||| ||||| | |||||||||||||||| |
|
|
| T |
26286966 |
gctgttaccacatatggatccatgtccgaagcagcacgcccaccttcaaattaacctacaatcaagacagtcggaaaggtaaacaacatgt |
26287056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University