View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_37 (Length: 333)
Name: NF18704_low_37
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_37 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 93 - 318
Target Start/End: Original strand, 3641452 - 3641677
Alignment:
| Q |
93 |
atttcacttatttatcttcatgattccaccagtacattctaggtccttgatcgcggcattgtctaaggttgctnnnnnnntctttacaatgtcagcgtac |
192 |
Q |
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| T |
3641452 |
atttcacttatttatcttcatgattccaccagtacattctgggtccttgatcgcggcattgtctaaggttgctaaaaaaatctttacaatgtcagcgtac |
3641551 |
T |
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| Q |
193 |
atgctttacaaatatatctaattacaaatataaatatctatacaataagatatgtgggtaaaaaatgttaccgaaactgcttgctgtgcagtaacttctg |
292 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3641552 |
atgcttgacaaatatatctaattacaaatataaatatctatacaataagatatgtgggtaaaaaatgttaccgaaactgcttgctgtgcagtaacttctg |
3641651 |
T |
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| Q |
293 |
ctttttgatccttagtggtttatctt |
318 |
Q |
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| T |
3641652 |
ctttttgatccttagtggtttatctt |
3641677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 3641314 - 3641400
Alignment:
| Q |
7 |
gaagcaaaggaaaaatgcatagttcaaaaagttgtgcaacttcatccacacaaaagctgccaatacattacagaaaattacagaaaa |
93 |
Q |
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| T |
3641314 |
gaagcaaaggaaaaatgcatagttcaaaaagttgtgcaacttcatccacacaacagctgccaatacattacagaaaattacagaaaa |
3641400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 3645834 - 3645898
Alignment:
| Q |
248 |
gggtaaaaaatgttaccgaaactgcttgctgtgcagtaacttctgctttttgatccttagtggtt |
312 |
Q |
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| T |
3645834 |
gggtaaaaagtgttaccgaaactgtttgctgtgcggtaacctctgcttcttgatccttggtggtt |
3645898 |
T |
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