View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_low_38 (Length: 333)
Name: NF18704_low_38
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_38 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 318
Target Start/End: Complemental strand, 10162043 - 10161743
Alignment:
| Q |
18 |
agatgctcccattactaaattcacagaattccttttgtgctatcatgaaatcaacgaattggtttgtgaagcatccttccatagaaggaacatcaatgat |
117 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10162043 |
agatgctcccattactgaattcacagaattccatttgtgcaatcatgaaatcaacgaattggtttgtgaagcatccttccatagaaggaacatcaatgat |
10161944 |
T |
|
| Q |
118 |
atgtgagctttcaattggagtttttcccattctctcccaaatggaagtgaaagctgtaaaagcacatgtgctgacaaacatgtaattctcaacattcgct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10161943 |
atgtgagctttcaattggagtttttcccattctctcccaaatggaagtgaaagctgtaaaagcacatgtgctgacaaacatgtaattctcaacattcgct |
10161844 |
T |
|
| Q |
218 |
atgtttttagcatcttgtaccactgatgccatatatgtgtcatgaataacaacgacccttttgaaaacagatgaaagtgattgcatgagttccgccacag |
317 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10161843 |
atgtttttagcatcttgtaccacagaagccatatatgtgtcatgaattacaacgacccttttgaaaacagatgaaagtgattgcatgagttccgccacag |
10161744 |
T |
|
| Q |
318 |
g |
318 |
Q |
| |
|
| |
|
|
| T |
10161743 |
g |
10161743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 81 - 321
Target Start/End: Complemental strand, 1608981 - 1608741
Alignment:
| Q |
81 |
ttgtgaagcatccttccatagaaggaacatcaatgatatgtgagctttcaattggagtttttcccattctctcccaaatggaagtgaaagctgtaaaagc |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| |||||||| | |||||||||||||||||||| || |||||| |
|
|
| T |
1608981 |
ttgtgaagcatccttccatagaaggaacatcaataatatgcgagctttcaaatggaggttttcccactttctcccaaatggaagtgaaaattgaaaaagc |
1608882 |
T |
|
| Q |
181 |
acatgtgctgacaaacatgtaattctcaacattcgctatgtttttagcatcttgtaccactgatgccatatatgtgtcatgaataacaacgacccttttg |
280 |
Q |
| |
|
|||||| || | |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||| ||||||||| ||| | |
|
|
| T |
1608881 |
acatgtactaagaaacgagtaattctcaacatttgctatgtttttagcatcttgtaccactgatgccattaaactatcatgaatcacaacgaccttttcg |
1608782 |
T |
|
| Q |
281 |
aaaacagatgaaagtgattgcatgagttccgccacaggttc |
321 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
1608781 |
aaaacagatgaaagtgaatgcatgagttctgccactggttc |
1608741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University