View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_42 (Length: 308)
Name: NF18704_low_42
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_42 |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 15 - 191
Target Start/End: Original strand, 36527374 - 36527550
Alignment:
| Q |
15 |
gatgaatagcatcgaggcttgtactgttttgatatgatcatgtgaagatgcgagacaatgaagtgtcatttgtattgttttcttgagccacttgaagcat |
114 |
Q |
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| T |
36527374 |
gatgaatagcatcgaggcttgtactgttttgatatgatcatgtgaagatgccagacaatgaagtgtcatttgtattgttttcttgagccacttgaagcat |
36527473 |
T |
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| Q |
115 |
ggttattcttgttattggtgcgaattatgtactgactttgtctgtcattgactaatcaccgtcagaaaatccaattg |
191 |
Q |
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| T |
36527474 |
ggttattcttgttattggtgcgaattatgtactgactttgtctgtcattgactaatcaccgtcagaaaatccaattg |
36527550 |
T |
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Target: chr1; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 190 - 295
Target Start/End: Original strand, 36527595 - 36527700
Alignment:
| Q |
190 |
tgcgtccgttaaatggtgtcatcgactggacattccatttttgttttgctattattattgtgaaaaatgcaaagtaacacatactatttatatattttgc |
289 |
Q |
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| T |
36527595 |
tgcgttcgttaaatggtgtcatcgactggacattccatttttgttttgttattattattgtgaaaaatgcaaagtaacacatactatttatatattttgc |
36527694 |
T |
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| Q |
290 |
aataga |
295 |
Q |
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| T |
36527695 |
aataga |
36527700 |
T |
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