View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_low_46 (Length: 284)

Name: NF18704_low_46
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_low_46
NF18704_low_46
[»] chr5 (4 HSPs)
chr5 (13-282)||(28532438-28532707)
chr5 (146-201)||(29021558-29021613)
chr5 (149-202)||(28673512-28673565)
chr5 (59-104)||(41900804-41900849)
[»] chr6 (2 HSPs)
chr6 (65-257)||(6588466-6588655)
chr6 (144-255)||(6416827-6416938)
[»] chr3 (5 HSPs)
chr3 (144-255)||(13469859-13469970)
chr3 (144-266)||(51763574-51763696)
chr3 (72-105)||(514011-514044)
chr3 (149-194)||(513925-513970)
chr3 (65-101)||(51763736-51763772)
[»] chr1 (2 HSPs)
chr1 (155-266)||(19467621-19467732)
chr1 (65-105)||(19467779-19467819)
[»] chr4 (6 HSPs)
chr4 (155-255)||(21833493-21833593)
chr4 (65-104)||(1601186-1601225)
chr4 (62-105)||(53761152-53761195)
chr4 (154-243)||(532589-532681)
chr4 (72-106)||(21833639-21833673)
chr4 (144-242)||(53761012-53761110)
[»] chr7 (1 HSPs)
chr7 (155-249)||(10615459-10615553)
[»] chr8 (2 HSPs)
chr8 (149-202)||(18314876-18314929)
chr8 (65-105)||(18314970-18315010)


Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 13 - 282
Target Start/End: Original strand, 28532438 - 28532707
Alignment:
Q  13 aatatgtgaagtcatgaatggaggacgtgatattgaatacgatgataatgagaaagacatcaatgttggtctctcacggagagcagaagcaatgactgca 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  28532438 aatatgtgaagtcatgaatggaggacgtgatattgaatacgatgataacgagaaagacatcaatgtcggtctctcacggagagcagaagcaatgcctgca 28532537  T
Q  113 tcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaag 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28532538 tcggttaataattgcttataaccatcaatgttgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaag 28532637  T
Q  213 aaagattaaccttgcggagtttgagaagtgaaagtgagagagcctctatcccattgttataactacgagt 282  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  28532638 aaagattaaccttgcggagtttgtgaagtgaaagtgagagagcctctaccccattgttataactacgagt 28532707  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 146 - 201
Target Start/End: Original strand, 29021558 - 29021613
Alignment:
Q  146 acttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgat 201  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| ||||||    
T  29021558 acttcttcgagaagcttacagttgtttataaagtggaaaagtgattggtcgttgat 29021613  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 28673565 - 28673512
Alignment:
Q  149 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 202  Q
    |||| |||||||||||||||| | | ||| |||||||||||||||| |||||||    
T  28673565 tcttcgagaagcttacagttgtttatcaaatggaaaagtgattggtcgttgatg 28673512  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 41900849 - 41900804
Alignment:
Q  59 aatgagaaagacatcaatgttggtctctcacggagagcagaagcaa 104  Q
    ||||| |||||| |||||||||||||||  ||||||||||||||||    
T  41900849 aatgataaagacctcaatgttggtctctggcggagagcagaagcaa 41900804  T

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Target: chr6 (Bit Score: 91; Significance: 4e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 65 - 257
Target Start/End: Complemental strand, 6588655 - 6588466
Alignment:
Q  65 aaagacatcaatgttggtctctcacggagagcagaagcaatgactgcatcggttaataattgcttataaccatcaatgttgacttcttggagaagcttac 164  Q
    |||||| ||||| ||||||||||||||||||||||||||||| |||||| |||||||    |   | |||||   ||||||||||| |||||||||||||    
T  6588655 aaagacgtcaattttggtctctcacggagagcagaagcaatgcctgcattggttaattcacg---acaaccaaatatgttgacttcctggagaagcttac 6588559  T
Q  165 agttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagagcct 257  Q
    | ||| |||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||| |||||  |||||||||||||    
T  6588558 aattgttgaacaagtggaaaagcgattgattgttgatgggaaagtaagaaagattaaccttgcgaagtttgaaaagtgcgagtgagagagcct 6588466  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 144 - 255
Target Start/End: Original strand, 6416827 - 6416938
Alignment:
Q  144 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 243  Q
    ||||||||| ||||||||||||||||  ||| || |||||||| ||||||||||| |  |||||   |||||||||||| ||||||||||| | |||||     
T  6416827 tgacttcttcgagaagcttacagttgtggaataactggaaaagggattggttgtttacaggaaatctagaaagattaactttgcggagtttaaaaagtgc 6416926  T
Q  244 aagtgagagagc 255  Q
    |||||| |||||    
T  6416927 aagtgatagagc 6416938  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 255
Target Start/End: Complemental strand, 13469970 - 13469859
Alignment:
Q  144 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 243  Q
    ||||||||| ||||||||||||||||  ||| ||||||||||||||| ||||||| || |||||   |||||||||||||||||||||||| | |||||     
T  13469970 tgacttcttcgagaagcttacagttgtggaataagtggaaaagtgataggttgtttataggaaaactagaaagattaaccttgcggagtttaaaaagtgc 13469871  T
Q  244 aagtgagagagc 255  Q
    |||||| |||||    
T  13469870 aagtgatagagc 13469859  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 266
Target Start/End: Complemental strand, 51763696 - 51763574
Alignment:
Q  144 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtga 243  Q
    |||| ||||||||||||||||||||||  |  | ||||||||| ||||| ||||| |||||| ||  ||||| ||||||||| || ||||||| ||| |     
T  51763696 tgacatcttggagaagcttacagttgcatagaaggtggaaaagcgattgattgtttatgggacagccagaaaaattaaccttacgcagtttgaaaagagc 51763597  T
Q  244 aagtgagagagcctctatcccat 266  Q
    |||||| || || | ||||||||    
T  51763596 aagtgaaagtgcttgtatcccat 51763574  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 514044 - 514011
Alignment:
Q  72 tcaatgttggtctctcacggagagcagaagcaat 105  Q
    ||||||||||||||||||||||||||||||||||    
T  514044 tcaatgttggtctctcacggagagcagaagcaat 514011  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 513970 - 513925
Alignment:
Q  149 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggt 194  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  513970 tcttgaagaagcttacagtttttgaacaagtggaaaagcgattggt 513925  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 101
Target Start/End: Complemental strand, 51763772 - 51763736
Alignment:
Q  65 aaagacatcaatgttggtctctcacggagagcagaag 101  Q
    |||||| ||||||||||||| ||||||||||||||||    
T  51763772 aaagacgtcaatgttggtctttcacggagagcagaag 51763736  T

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Target: chr1 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 155 - 266
Target Start/End: Complemental strand, 19467732 - 19467621
Alignment:
Q  155 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 254  Q
    ||||||||||| ||| | |||||||| ||||  |||| || | | |||||||||  |||||||||||||||||||||||||||||||| |||||| ||||    
T  19467732 agaagcttacaattgttaaacaagtgaaaaatcgatttgtcgctcatgggaaagccagaaagattaaccttgcggagtttgagaagtgcaagtgaaagag 19467633  T
Q  255 cctctatcccat 266  Q
    |||||| |||||    
T  19467632 cctctaccccat 19467621  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 19467819 - 19467779
Alignment:
Q  65 aaagacatcaatgttggtctctcacggagagcagaagcaat 105  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  19467819 aaagacctcaatgttggtctctcacggatagcagaagcaat 19467779  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 155 - 255
Target Start/End: Complemental strand, 21833593 - 21833493
Alignment:
Q  155 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtgagagag 254  Q
    ||||||||||| ||  | | |||||||||||| ||||| ||||| |||||||||  |||||||||||||||||||||||||| ||||| |||||| ||||    
T  21833593 agaagcttacaattctttagcaagtggaaaagagattgattgtttatgggaaagccagaaagattaaccttgcggagtttgataagtgcaagtgaaagag 21833494  T
Q  255 c 255  Q
    |    
T  21833493 c 21833493  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 65 - 104
Target Start/End: Original strand, 1601186 - 1601225
Alignment:
Q  65 aaagacatcaatgttggtctctcacggagagcagaagcaa 104  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  1601186 aaagacctcaatgttggtctctcacggagagcagaagcaa 1601225  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 105
Target Start/End: Complemental strand, 53761195 - 53761152
Alignment:
Q  62 gagaaagacatcaatgttggtctctcacggagagcagaagcaat 105  Q
    ||||||||| ||||||||||||| ||||||||||||||||||||    
T  53761195 gagaaagacgtcaatgttggtctttcacggagagcagaagcaat 53761152  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 532589 - 532681
Alignment:
Q  154 gagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg--ggaaag-gaagaaagattaaccttgcggagtttgagaagtga 243  Q
    |||||||||||| ||  |||||||||||||||| ||||||| |||||||  |  | | | |||||||||||||||||||||||||| ||||||    
T  532589 gagaagcttacaatttttgaacaagtggaaaagcgattggtcgttgatgtagtcatgagtagaaagattaaccttgcggagtttgaaaagtga 532681  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 106
Target Start/End: Complemental strand, 21833673 - 21833639
Alignment:
Q  72 tcaatgttggtctctcacggagagcagaagcaatg 106  Q
    ||||||||||||||||||||||||| |||||||||    
T  21833673 tcaatgttggtctctcacggagagctgaagcaatg 21833639  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 242
Target Start/End: Complemental strand, 53761110 - 53761012
Alignment:
Q  144 tgacttcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtg 242  Q
    |||| ||||| ||||| ||||| ||  | |||||||||||||||||||| | | | ||||  |||  ||||||||||||||| |||||||||| |||||    
T  53761110 tgacctcttgaagaagattacaattcttcaacaagtggaaaagtgattgttcgattatggttaagccagaaagattaaccttacggagtttgaaaagtg 53761012  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 155 - 249
Target Start/End: Original strand, 10615459 - 10615553
Alignment:
Q  155 agaagcttacagttgctgaacaagtggaaaagtgattggttgttgatgggaaaggaagaaagattaaccttgcggagtttgagaagtgaaagtga 249  Q
    |||||||||||||||  || |||||||| ||| ||||| ||||| ||| ||||   |||||||||||||||||||||||| | ||||||||||||    
T  10615459 agaagcttacagttgtcgagcaagtggagaagggattgattgtttatgagaaaactagaaagattaaccttgcggagtttaaaaagtgaaagtga 10615553  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 18314929 - 18314876
Alignment:
Q  149 tcttggagaagcttacagttgctgaacaagtggaaaagtgattggttgttgatg 202  Q
    |||| |||||||||||||||  |||||||||||||||| ||||| | |||||||    
T  18314929 tcttcgagaagcttacagttcttgaacaagtggaaaagcgattgatcgttgatg 18314876  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 18315010 - 18314970
Alignment:
Q  65 aaagacatcaatgttggtctctcacggagagcagaagcaat 105  Q
    |||||| |||| ||||||||||||||||||||| |||||||    
T  18315010 aaagacctcaaagttggtctctcacggagagcaaaagcaat 18314970  T

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