View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_low_47 (Length: 280)

Name: NF18704_low_47
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_low_47
NF18704_low_47
[»] chr6 (4 HSPs)
chr6 (10-280)||(28611998-28612267)
chr6 (13-245)||(11931953-11932186)
chr6 (234-278)||(21937282-21937326)
chr6 (234-278)||(24509276-24509320)
[»] chr1 (12 HSPs)
chr1 (10-274)||(49053789-49054055)
chr1 (10-274)||(49061369-49061635)
chr1 (228-280)||(44524460-44524512)
chr1 (13-190)||(42263370-42263548)
chr1 (228-280)||(48366493-48366545)
chr1 (228-278)||(21432107-21432157)
chr1 (228-278)||(29681303-29681353)
chr1 (228-278)||(35624729-35624779)
chr1 (13-127)||(50059492-50059606)
chr1 (17-128)||(52282015-52282128)
chr1 (13-105)||(17458409-17458501)
chr1 (233-277)||(19310562-19310606)
[»] chr3 (7 HSPs)
chr3 (10-280)||(52653769-52654041)
chr3 (10-260)||(33709825-33710077)
chr3 (17-274)||(40574172-40574428)
chr3 (71-123)||(23686089-23686141)
chr3 (71-123)||(24058326-24058378)
chr3 (38-127)||(31362247-31362336)
chr3 (195-280)||(16729868-16729954)
[»] chr7 (7 HSPs)
chr7 (88-277)||(12239475-12239667)
chr7 (194-280)||(37469057-37469144)
chr7 (228-278)||(5436972-5437022)
chr7 (154-277)||(24871526-24871648)
chr7 (17-128)||(34091475-34091586)
chr7 (204-269)||(1840839-1840905)
chr7 (233-277)||(23757023-23757067)
[»] chr8 (4 HSPs)
chr8 (10-266)||(12729386-12729644)
chr8 (155-278)||(28695970-28696094)
chr8 (71-280)||(44729133-44729349)
chr8 (234-278)||(25953607-25953651)
[»] chr5 (5 HSPs)
chr5 (88-280)||(9851294-9851487)
chr5 (10-274)||(29006480-29006746)
chr5 (173-280)||(36203216-36203324)
chr5 (234-280)||(2022669-2022715)
chr5 (234-275)||(43378152-43378193)
[»] chr2 (2 HSPs)
chr2 (13-277)||(14218739-14219004)
chr2 (23-266)||(34680971-34681211)
[»] chr4 (12 HSPs)
chr4 (89-271)||(48779718-48779902)
chr4 (13-277)||(20251408-20251674)
chr4 (228-280)||(32429726-32429778)
chr4 (228-278)||(3415594-3415644)
chr4 (10-151)||(24391830-24391970)
chr4 (228-278)||(3425142-3425192)
chr4 (234-278)||(18670553-18670597)
chr4 (228-279)||(18736870-18736921)
chr4 (161-280)||(24129178-24129298)
chr4 (13-212)||(47077960-47078154)
chr4 (228-278)||(18716198-18716248)
chr4 (233-278)||(30020297-30020342)
[»] scaffold0007 (1 HSPs)
scaffold0007 (16-274)||(217750-217999)


Alignment Details
Target: chr6 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 10 - 280
Target Start/End: Complemental strand, 28612267 - 28611998
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  28612267 attatactaaatcattctttcttatctctagtgcacgaggggaattgacagaacattgttttgtatactaccattgaacgatatgcttggtgtgaatgta 28612168  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaag 208  Q
    ||||||||||||||||||||||||||  ||||||||||||||| |||||||| ||||||||| |||||||||||||||||||| ||||||||||||||||    
T  28612167 caagtcacgtcaaggattccattgtattctgaaggggattcgccgatataccattttacatactgttgacataactggtggggaaaaatcgaacctaaag 28612068  T
Q  209 gttatgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    |||||||||||  ||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||    
T  28612067 gttatgtgttc--cacacactttaaaatttatgtgcacacttcatcatgttcatattcatcatcttcttgat 28611998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 245
Target Start/End: Original strand, 11931953 - 11932186
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    |||||| |||||||||| || | ||||||||||||| | | |||||||||  || || | || ||||||| ||  |||||  ||||||||||||   |||    
T  11931953 atactatatcattctttcttttatctagtgcacgagagaatttgacagaattttattctataaactaccattgt-cgataaacttggtgtgaataagcaa 11932051  T
Q  113 gtcacgtcaaggattccattgta-cctgaaggggattcgctgatata-cccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggt 210  Q
    ||||| ||||||||| ||| ||| |||||||||| ||||||| |||| ||||||| |||   |||| ||||||| |||||||  |||| |||||||||||    
T  11932052 gtcacatcaaggatttcatcgtatcctgaagggg-ttcgctggtataacccttttgcatccggttggcataactagtgggggcgaatcaaacctaaaggt 11932150  T
Q  211 ta-tgtgttccacacacactttagaatttatgtgca 245  Q
    || ||||| | |||||  ||||  ||||||||||||    
T  11932151 tagtgtgtccaacacatgctttgaaatttatgtgca 11932186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 21937326 - 21937282
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||||||||||| |||||||||| |||||||||||||||||||||    
T  21937326 aatttatgtgcacacttcatcatattcatcttcatcatcttcttg 21937282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 24509276 - 24509320
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    ||||||| |||| ||||||||||  ||||||||||||||||||||    
T  24509276 aatttatttgcaaacttcatcatactcatcttcatcatcttcttg 24509320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 5e-59; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 49053789 - 49054055
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| |  ||||||||||||||||| ||||| |||||| || ||||||| ||||||| ||  |||||||||||||||||||||     
T  49053789 attatactaaatcattctttctcttctctagtgcacgagggaaattggcagaactttattttgtaaactaccattg-tcgatatgcttggtgtgaatgtg 49053887  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctgatat-acccttttacatattgttgacataactggtgggggaaaatcgaacctaaa 207  Q
    |||||||||||||||||| ||||||| |||||||||||||||| | ||| |||||||| |||   ||||  ||||||||||||||  |||||||||||||    
T  49053888 caagtcacgtcaaggatttcattgtatcctgaaggggattcgccggtataacccttttgcatccagttggtataactggtgggggcgaatcgaacctaaa 49053987  T
Q  208 ggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatctt 274  Q
    ||||| ||| | |||||||| | || ||||||||||| | |||||||||||||||||||| |||||||    
T  49053988 ggttagtgtttcccacacacgcattggaatttatgtgtacacttcatcatgttcatcttcttcatctt 49054055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 49061369 - 49061635
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| || ||||||||||||||||| |||||||| ||| || || |||| ||||||| ||  ||||||| |||||||||||||     
T  49061369 attatactaaatcattctttcttttctctagtgcacgagggaaattgacaaaactttattctgtaaactaccattgt-cgatatgtttggtgtgaatgtg 49061467  T
Q  110 caagtcacgtcaaggattccattgtac-ctgaaggggattcgctgatata-cccttttacatattgttgacataactggtgggggaaaatcgaacctaaa 207  Q
    ||| ||||||||||||||||||||||  ||||||||||||||  | |||| ||||||| ||| | |||| |||||||||||||||  |||||||||||||    
T  49061468 caaatcacgtcaaggattccattgtattctgaaggggattcgtcggtataacccttttgcatctagttggcataactggtgggggcgaatcgaacctaaa 49061567  T
Q  208 ggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatctt 274  Q
    |  || ||| | |||||||| |||||||||||||||||| |||||||||||||||||||| |||||||    
T  49061568 gactagtgtttcccacacacgctttagaatttatgtgcacacttcatcatgttcatcttcttcatctt 49061635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 44524460 - 44524512
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  44524460 ctttggaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 44524512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 42263548 - 42263370
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    |||||| |||||||||| || ||||||||||||||| | ||| |||| ||| |||||||||| | || || ||  ||||| |||| || ||||||| |||    
T  42263548 atactatatcattctttcttttctctagtgcacgagagaaatcgacaaaactttgttttgtaaattaacattgttcgatacgcttagtatgaatgtgcaa 42263449  T
Q  113 gtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtggg 190  Q
    |||| ||||| ||||  |  ||| |||||||||||||| | | |||||| |||| ||| |||||||||||| |||||||    
T  42263448 gtcatgtcaaagattttaaagtatcctgaaggggattcaccgttataccattttgcattttgttgacataattggtggg 42263370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 48366493 - 48366545
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||||    
T  48366493 ctttcgaatttatttgcacacttcatcatgttcatcttcatcatcttcttgat 48366545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 21432107 - 21432157
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||| ||||||||||||| |||||| |||||||||||||||||||||||||    
T  21432107 ctttggaatttatgtgcacacttcagcatgttcatcttcatcatcttcttg 21432157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 29681353 - 29681303
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  29681353 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttg 29681303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 35624779 - 35624729
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||| ||||||||||||| ||||| | || |||||||||||||||||||||    
T  35624779 ctttggaatttatgtgcacacttcgtaatattcatcttcatcatcttcttg 35624729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 127
Target Start/End: Original strand, 50059492 - 50059606
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    ||||| ||||||||||| || ||||||||||||||| | |||| ||||||| || || | || |||| || ||| ||||| | | | ||||||| || ||    
T  50059492 atactgaatcattctttattttctctagtgcacgagagaaatttacagaactttattctataaactatcattgatcgatacgttggatgtgaatttataa 50059591  T
Q  113 gtcacgtcaaggatt 127  Q
    |||||||| ||||||    
T  50059592 gtcacgtccaggatt 50059606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 52282128 - 52282015
Alignment:
Q  17 taaatcattcttttttatctctagtgcacgagggg--aattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagt 114  Q
    ||||||||||||| || ||||||||||| ||| |   |||||||| ||| || || |||| ||||||| ||| ||||  ||||||||||||| | |||||    
T  52282128 taaatcattctttcttttctctagtgcatgagagagaaattgacataactttattctgtaaactaccattgatcgatgcgcttggtgtgaatatgcaagt 52282029  T
Q  115 cacgtcaaggattc 128  Q
    || ||||| |||||    
T  52282028 catgtcaaagattc 52282015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 17458409 - 17458501
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaa 105  Q
    |||||||||||||||||  | |||||||||||||||  |||| || | ||| || ||||||| |||| || ||| ||||| ||||||| ||||    
T  17458409 atactaaatcattctttcatttctctagtgcacgagatgaatagagataactttattttgtaaactatcattgatcgatacgcttggtttgaa 17458501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 19310606 - 19310562
Alignment:
Q  233 gaatttatgtgcatacttcatcatgttcatcttcatcatcttctt 277  Q
    ||||||||||||| |||||||||| | |||||| |||||||||||    
T  19310606 gaatttatgtgcacacttcatcatatacatctttatcatcttctt 19310562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 114; Significance: 7e-58; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 10 - 280
Target Start/End: Original strand, 52653769 - 52654041
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||  || ||||||||||||||||  |||||||||||| || || |||| ||||||| ||  |||||  |||| |||||||||     
T  52653769 attatactaaatcattcttacttttctctagtgcacgaggaaaattgacagaactttattctgtaaactaccattgt-cgatacacttgatgtgaatgtg 52653867  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctgatataccc-ttttacatattgttgacataactggtgggggaaaatcgaacctaaa 207  Q
    |||||||||||||||||||||||||| |||||||||||||||| | |||| || |||| |||   |||| ||||||||||| |||  ||| |||||||||    
T  52653868 caagtcacgtcaaggattccattgtatcctgaaggggattcgccggtataaccattttgcatccggttggcataactggtgagggcgaattgaacctaaa 52653967  T
Q  208 ggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    ||||| ||||| |||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||||||    
T  52653968 ggttagtgtgtcccacacacgctttggaatttatgtgcacacttcatcatgttcattttcatcatcttcttgat 52654041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 260
Target Start/End: Original strand, 33709825 - 33710077
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| || |||||||||||| || | | |||||||||| || || |||| ||||||| ||  ||||| |||||||||||||||     
T  33709825 attatactaaatcattctttcttttctctagtgcaccagagaatttgacagaactttattctgtaaactaccattg-tcgatacgcttggtgtgaatgtg 33709923  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctg--atatacccttttacatattgttgacataactggtgggggaaaatcgaacctaa 206  Q
    ||||||||||||||||||| || ||| ||| ||||||||| || |  |||||||||||| |||   ||||||||||||||||| ||  |||||| |||||    
T  33709924 caagtcacgtcaaggattctatcgtatcctaaaggggattagccggtatatacccttttgcatccggttgacataactggtggaggtgaatcgatcctaa 33710023  T
Q  207 aggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttc 260  Q
    |||||| ||||| |||||||| |||| ||||||| ||||| ||||||||||||||    
T  33710024 aggttagtgtgtcccacacacgctttggaattta-gtgcacacttcatcatgttc 33710077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 274
Target Start/End: Complemental strand, 40574428 - 40574172
Alignment:
Q  17 taaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtca 116  Q
    ||||||||||||| || ||||||||||||||| | |||||||||||| || || |||| |||| || |||  |||| |||| |||||||||| |||||||    
T  40574428 taaatcattctttcttttctctagtgcacgagagaaattgacagaactttattctgtaaactatcattgattgatacgcttcgtgtgaatgtgcaagtca 40574329  T
Q  117 cgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtta-tg 214  Q
    |||||| |||||||| ||| ||||||||  |||||||||||| || |||| |||    || |||| |||||||||||  |||| | | ||||||||| ||    
T  40574328 cgtcaaagattccatagtatcctgaaggtaattcgctgatatgccattttgcatccaattaacattactggtgggggtgaatcaagcttaaaggttagtg 40574229  T
Q  215 tgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatctt 274  Q
    ||| ||||| |||||| ||||||||||||||    || |||||||||| |||||||||||    
T  40574228 tgtcccacatacacttcagaatttatgtgca---ctcttcatgttcattttcatcatctt 40574172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 23686089 - 23686141
Alignment:
Q  71 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaag 123  Q
    |||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  23686089 tgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaag 23686141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 123
Target Start/End: Original strand, 24058326 - 24058378
Alignment:
Q  71 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaag 123  Q
    |||| ||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  24058326 tgtaaactaccaatgatcgatatgcttggtgtgaatgtccaaatcacgtcaag 24058378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 38 - 127
Target Start/End: Complemental strand, 31362336 - 31362247
Alignment:
Q  38 tagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggatt 127  Q
    ||||||||||||  |||||||||||| || ||||||| ||||| |  || ||||| | |||||||||||||| ||||  |||||||||||    
T  31362336 tagtgcacgaggaaaattgacagaactttattttgtaaactactatcgatcgatacgtttggtgtgaatgtataagttccgtcaaggatt 31362247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 280
Target Start/End: Original strand, 16729868 - 16729954
Alignment:
Q  195 aatcgaacctaaaggtt-atgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    ||||||||||| ||||| ||| ||  ||||||| ||||  |||| ||||||| |||| |||||||||||||||||| |||| |||||    
T  16729868 aatcgaacctagaggttgatgagtctcacacacgctttgaaattaatgtgcacactttatcatgttcatcttcatcttcttattgat 16729954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 88 - 277
Target Start/End: Complemental strand, 12239667 - 12239475
Alignment:
Q  88 cgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgtt-gacataactg 185  Q
    ||||| ||||||||||||||| |||||||||||||||||| ||| ||| |||||||||||||||| || |||||||||| |||   ||| ||||||||||    
T  12239667 cgatacgcttggtgtgaatgtgcaagtcacgtcaaggatttcatcgtatcctgaaggggattcgccgacatacccttttgcatccggtttgacataactg 12239568  T
Q  186 gtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttctt 277  Q
    |||||||  |||||||||||||||||| ||||| |||||||| ||||  |||||||||||| |||||||||| |||||| |||||||||||||    
T  12239567 gtgggggcgaatcgaacctaaaggttaatgtgtcccacacacgctttgaaatttatgtgcacacttcatcatattcatcatcatcatcttctt 12239475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 194 - 280
Target Start/End: Original strand, 37469057 - 37469144
Alignment:
Q  194 aaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    ||||| ||||||||||||| ||||| |||||||||||||  |||||||||||| | || |||||||||||||||||||||||||||||    
T  37469057 aaatcaaacctaaaggttagtgtgtcccacacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgat 37469144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 5436972 - 5437022
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||| |||||||| |||| ||||||||||||||||||||||||||||||||    
T  5436972 ctttggaatttatttgcacacttcatcatgttcatcttcatcatcttcttg 5437022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 154 - 277
Target Start/End: Original strand, 24871526 - 24871648
Alignment:
Q  154 atatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttca 252  Q
    |||||||||||||||| |  ||| ||||||||| ||||   |||| ||| ||||||||| ||||||  |||||||||||| ||||||| ||||  ||| |    
T  24871526 atatacccttttacatgtgattggcataactggcggggacgaatcaaacgtaaaggttaatgtgtt--acacacactttaaaatttatatgcactcttta 24871623  T
Q  253 tcatgttcatcttcatcatcttctt 277  Q
    || | || |||||||||||||||||    
T  24871624 tcgtatttatcttcatcatcttctt 24871648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 34091586 - 34091475
Alignment:
Q  17 taaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtca 116  Q
    |||||||||| || || |||||| |||| ||| | |||||| ||||| ||  |||||| ||||||| | |   ||| | ||||||||||||| |||||||    
T  34091586 taaatcattcattcttttctctaatgcatgagagaaattgagagaactttactttgtaaactaccattaattcatacgattggtgtgaatgtgcaagtca 34091487  T
Q  117 cgtcaaggattc 128  Q
    ||||||||||||    
T  34091486 cgtcaaggattc 34091475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 269
Target Start/End: Original strand, 1840839 - 1840905
Alignment:
Q  204 taaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatc 269  Q
    ||||||||| ||| |||||||||||||||||| ||||||| ||   ||||||||||||||| |||||    
T  1840839 taaaggttagtgtattccacacacactttagattttatgtccacttttcatcatgttcatcatcatc 1840905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 23757067 - 23757023
Alignment:
Q  233 gaatttatgtgcatacttcatcatgttcatcttcatcatcttctt 277  Q
    |||||||||| ||  |||||||||||||||||||||||| |||||    
T  23757067 gaatttatgttcactcttcatcatgttcatcttcatcattttctt 23757023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 12729386 - 12729644
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||| ||||||| || ||||||||||||||| | |||||||||||| || ||  ||| ||||| | ||  |||||||||||||||||||||     
T  12729386 attatactaaataattctttcttttctctagtgcacgagagaaattgacagaactttattcagtaaactacaattgt-cgatatgcttggtgtgaatgtg 12729484  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgctgatat-acccttttacatattgttgacataactggtgggggaaaatcgaacctaaa 207  Q
    ||||||| |||||||||| ||| ||| ||||||||||| |||| | ||| |||||||| |||   |||| |||||||||||| ||  ||||| |||||||    
T  12729485 caagtcatgtcaaggatttcatcgtatcctgaaggggaatcgccggtataacccttttgcatccggttggcataactggtggaggcgaatcgtacctaaa 12729584  T
Q  208 ggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttc 266  Q
    ||||| ||||| |||||||| |||| ||||| ||||| |   ||||||||||||||||||    
T  12729585 ggttagtgtgtcccacacactctttggaattcatgtgtacttttcatcatgttcatcttc 12729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 278
Target Start/End: Complemental strand, 28696094 - 28695970
Alignment:
Q  155 tatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcat 253  Q
    ||||||||||| ||| | |||||||||||||||| |||  |||| |||||||| |||| ||||| |||||||| |||| ||||||||| |||| ||||||    
T  28696094 tatacccttttgcatctggttgacataactggtgagggcgaatcaaacctaaaagttagtgtgtcccacacacgctttggaatttatgcgcattcttcat 28695995  T
Q  254 catgttcatcttcatcatcttcttg 278  Q
    ||||||||| |||||||||||||||    
T  28695994 catgttcatattcatcatcttcttg 28695970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 280
Target Start/End: Original strand, 44729133 - 44729349
Alignment:
Q  71 tgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgata-tacccttttaca 168  Q
    |||| |||| || ||| ||||| ||||||| ||||||| ||||||||||||||||||||| |||| ||| |||||||||||| | || |||||| || ||    
T  44729133 tgtaaactatcattgatcgatacgcttggtatgaatgtgcaagtcacgtcaaggattccaatgtatcctaaaggggattcgccggtattaccctcttgca 44729232  T
Q  169 tattgttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttca----tcatgttcatc 263  Q
    |   |||| ||||||| |  ||||  ||| |||| ||||||||| ||| | |||||||| |||| |||||||||||||  |||||    ||||||||||     
T  44729233 tccggttggcataactcgcaggggtgaattgaacataaaggttagtgtatcccacacacgctttggaatttatgtgcactcttcatcattcatgttcatt 44729332  T
Q  264 ttcatcatcttcttgat 280  Q
    ||||| |||||||||||    
T  44729333 ttcattatcttcttgat 44729349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 25953607 - 25953651
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||||||||||| |||||||||| ||||||||||| |||||||||    
T  25953607 aatttatgtgcacacttcatcatattcatcttcattatcttcttg 25953651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 88 - 280
Target Start/End: Complemental strand, 9851487 - 9851294
Alignment:
Q  88 cgatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgtacct-gaaggggattcgctgatatacccttttacatattgttgacataactgg 186  Q
    ||||| ||||||||||||||| ||| |||| | ||| ||||||| ||| || ||||||||||||| | ||||||||||| |||   |||| | |||||||    
T  9851487 cgatacgcttggtgtgaatgtgcaaatcacattaagtattccatcgtatcttgaaggggattcgccggtatacccttttgcattcggttggcttaactgg 9851388  T
Q  187 tgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    | ||| | ||| ||||||||| |||| ||||| |||||||| |||| ||||||||||||| | |||||||||||||||||||||||||| |||||    
T  9851387 taggg-agaattgaacctaaatgttagtgtgtcccacacacgctttggaatttatgtgcacaattcatcatgttcatcttcatcatctttttgat 9851294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 10 - 274
Target Start/End: Original strand, 29006480 - 29006746
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtaca-ctaccaatgaacgatatgcttggtgtgaatgt 108  Q
    ||||||||||||||||| || || | |||||||||||||   | |||||||||| || || |||| | ||| || ||| ||||| |||||||||||||||    
T  29006480 attatactaaatcattcattcttttttctagtgcacgagataagttgacagaactttattctgtaaaactaacattga-cgatacgcttggtgtgaatgt 29006578  T
Q  109 acaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatat-acccttttacatattgttgacataactggtgggggaaaatcgaacctaa 206  Q
      | |||| ||||||||||||||||||  |||||| ||||||||  |||| |||||||| ||| | ||||| | |||| || ||||  ||||||||||||    
T  29006579 gtatgtcatgtcaaggattccattgtattctgaagaggattcgccaatataacccttttgcatctggttgataaaactagt-ggggcgaatcgaacctaa 29006677  T
Q  207 aggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatctt 274  Q
    | |||| |||||  ||||||| ||||  ||||||||||||  ||||||||| |||||||| ||||||||    
T  29006678 aagttagtgtgtctcacacacgctttgaaatttatgtgcactcttcatcatattcatcttgatcatctt 29006746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 280
Target Start/End: Original strand, 36203216 - 36203324
Alignment:
Q  173 gttgacataactggtgggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcat 271  Q
    |||| ||||||||||||||   |||||||| ||||||||| ||||  |||||||| |  |  |||||||||||| | ||||| |||||||||||||||||    
T  36203216 gttggcataactggtggggacgaatcgaacttaaaggttagtgtggcccacacacgccatgaaatttatgtgcacaattcattatgttcatcttcatcat 36203315  T
Q  272 cttcttgat 280  Q
    |||||||||    
T  36203316 cttcttgat 36203324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 234 - 280
Target Start/End: Complemental strand, 2022715 - 2022669
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||    
T  2022715 aatttatgtgcacatttcatcatgttcatcttcatcatcttcttgat 2022669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 275
Target Start/End: Complemental strand, 43378193 - 43378152
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttc 275  Q
    |||||||||||| |||||||||| ||||||||||||||||||    
T  43378193 aatttatgtgcacacttcatcatattcatcttcatcatcttc 43378152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 13 - 277
Target Start/End: Complemental strand, 14219004 - 14218739
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    ||||||||||||||||| || ||||||||||||||||  |||||| ||||| || ||||||| |||| || |||  |||| | ||||||||||||||||     
T  14219004 atactaaatcattctttcttttctctagtgcacgaggaaaattgaaagaactttattttgtaaactatcattgatggatacgtttggtgtgaatgtacat 14218905  T
Q  113 gtcacgtcaaggattccattgtacct-gaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtt 211  Q
    |||| ||||  ||||| || ||| || ||||| |||||  |||||||| ||||| |||   ||||||||||||||||||   || ||||||||||| |||    
T  14218904 gtcaagtcagtgattctatagtatcttgaaggagattcattgatatactcttttgcatccagttgacataactggtgggacgaa-tcgaacctaaaagtt 14218806  T
Q  212 a-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttctt 277  Q
    | | |||   |||||||||||  ||||||||||||    |||||||||||| |||||||||||||||    
T  14218805 agtttgtctaacacacacttttaaatttatgtgcacttgtcatcatgttcaccttcatcatcttctt 14218739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 266
Target Start/End: Complemental strand, 34681211 - 34680971
Alignment:
Q  23 attcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtcacgtcaa 122  Q
    ||||||| || ||||| ||| ||||| | |||||||| ||| || ||  ||| |||| || ||| ||||| ||||| ||||||||| |||||||     |    
T  34681211 attctttcttttctctggtgaacgagagaaattgacaaaactttattacgtaaactatcattgatcgatacgcttgatgtgaatgtgcaagtca-----a 34681117  T
Q  123 ggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggttatgtgttcca 221  Q
    | ||| ||| ||| ||||||  ||||||||| ||||| |||||| ||  | |||| |||||||| |||| | |||||||||||||| |||| |||| ||     
T  34681116 gaatttcatagtatcctgaaaaggattcgcttatatatccttttgcacctagttggcataactgatgggagcaaatcgaacctaaaagtta-gtgtaccc 34681018  T
Q  222 cacaca--ctttagaatttatgtgcatacttcatcatgttcatcttc 266  Q
    ||||||  ||||  |||| |||||||  |||||||||||||||||||    
T  34681017 cacacatgcttttaaattcatgtgcagtcttcatcatgttcatcttc 34680971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 65; Significance: 1e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 89 - 271
Target Start/End: Complemental strand, 48779902 - 48779718
Alignment:
Q  89 gatatgcttggtgtgaatgtacaagtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggt 187  Q
    |||||||||||||||||||| ||||||||||||| |||| ||| ||| |||||||||||||| | ||||||||||||| |||    ||| |||||||||     
T  48779902 gatatgcttggtgtgaatgtgcaagtcacgtcaatgatttcatagtatcctgaaggggattcaccgatatacccttttgcatccaattggcataactggc 48779803  T
Q  188 gggggaaaatcgaacctaaaggtta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcat 271  Q
     | ||  |||||||| ||||||||| ||| | |||||||| ||||  ||||||| |||| ||||||||||||||||||| |||||    
T  48779802 agaggcgaatcgaacataaaggttagtgtatcccacacacgctttgaaatttatatgcacacttcatcatgttcatctttatcat 48779718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 13 - 277
Target Start/End: Original strand, 20251408 - 20251674
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    ||||||||||||| ||| || ||| ||||||||||| | |||||||||||| || || |||| |||| || ||| |||||  |||| |||||||||||||    
T  20251408 atactaaatcattatttcttttctgtagtgcacgagagaaattgacagaactttattatgtaaactatcattgatcgatacacttgatgtgaatgtacaa 20251507  T
Q  113 gtcacgtcaaggattccattgta-cctgaa-ggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggt 210  Q
    | ||| |||| ||||| ||  || |||||| |||||||| |   ||||||| ||| |||   |||||||| ||| || |||| |||| ||| |||||  |    
T  20251508 ggcacatcaatgattcaatcatatcctgaagggggattcaccagtatacccctttgcatccggttgacattactagtaggggcaaatggaatctaaatat 20251607  T
Q  211 ta-tgtgttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatcttctt 277  Q
    || |||| || |||||| ||||  |||||||||| |  ||||||||||||||||||||||||||||||    
T  20251608 tagtgtg-tctacacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatcttctt 20251674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 228 - 280
Target Start/End: Original strand, 32429726 - 32429778
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttgat 280  Q
    |||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  32429726 ctttagaatttatgtgcacacttcatcatgttcatcttcatcatcatcttgat 32429778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 3415594 - 3415644
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  3415594 ctttggaatttatgtgcacacttcatcatgttcatcttcatcatcttcttg 3415644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 24391830 - 24391970
Alignment:
Q  10 attatactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgta 109  Q
    |||||||||||||||||||| || ||||||||||| ||| | |||||||| ||| || || |||| |||| || ||  ||||| | |||||||| ||||     
T  24391830 attatactaaatcattctttcttttctctagtgcatgagagaaattgacataactttattctgtaaactatcattg-tcgatacgtttggtgtg-atgtg 24391927  T
Q  110 caagtcacgtcaaggattccattgta-cctgaaggggattcgc 151  Q
    ||||||||  |||||||||||||||| | ||||||||||||||    
T  24391928 caagtcacaccaaggattccattgtatcttgaaggggattcgc 24391970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 228 - 278
Target Start/End: Original strand, 3425142 - 3425192
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||||    
T  3425142 ctttggaatttatgtgcacactttatcatgttcatcttcatcatcttcttg 3425192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Complemental strand, 18670597 - 18670553
Alignment:
Q  234 aatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||||||||||| ||||||||||||||||||| ||||||||||||    
T  18670597 aatttatgtgcacacttcatcatgttcatctttatcatcttcttg 18670553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 228 - 279
Target Start/End: Complemental strand, 18736921 - 18736870
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttga 279  Q
    |||| ||||||||||||| ||||||||| ||||||||| |||||||||||||    
T  18736921 ctttggaatttatgtgcacacttcatcaagttcatcttaatcatcttcttga 18736870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 280
Target Start/End: Complemental strand, 24129298 - 24129178
Alignment:
Q  161 cttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtt-atgtgttccacacacactttagaatttatgtgcatacttcatcatgtt 259  Q
    ||||||||| | |||| |||||||||||||||| |||| ||  ||||| || |||||| || ||||  |||| |||||||||||||   |||||||| ||    
T  24129298 cttttacatctggttggcataactggtgggggagaatcaaagttaaagattaatgtgtcccgcacatgctttggaatttatgtgcacttttcatcatatt 24129199  T
Q  260 catcttcatcatcttcttgat 280  Q
    |||| |||||  |||||||||    
T  24129198 catcatcatcgccttcttgat 24129178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 13 - 212
Target Start/End: Complemental strand, 47078154 - 47077960
Alignment:
Q  13 atactaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaa 112  Q
    ||||||||||||||||| || | | ||||| ||||| | |||||||||||| || || |||| |||| || ||| || |     |||||| |||||  ||    
T  47078154 atactaaatcattctttcttttttgtagtgtacgagagaaattgacagaactttattctgtaaactaacattgatcgtt-----tggtgtaaatgtgtaa 47078060  T
Q  113 gtcacgtcaaggattccattgta-cctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggtt 211  Q
    ||||||||||||||||||| ||| ||| ||||||||| | | | |||||||||| |||    ||||||||| |||||||| | ||| ||| |||||||||    
T  47078059 gtcacgtcaaggattccatggtatcctaaaggggatttg-tcaaatacccttttgcatccgattgacataattggtggggaagaatagaatctaaaggtt 47077961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 228 - 278
Target Start/End: Complemental strand, 18716248 - 18716198
Alignment:
Q  228 ctttagaatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||| |||||||||| || ||||||||| ||||||||| ||||||||||||    
T  18716248 ctttggaatttatgtacacacttcatcaagttcatcttaatcatcttcttg 18716198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 278
Target Start/End: Original strand, 30020297 - 30020342
Alignment:
Q  233 gaatttatgtgcatacttcatcatgttcatcttcatcatcttcttg 278  Q
    |||||||| |||| ||||||||||  ||||||||||||||||||||    
T  30020297 gaatttatatgcacacttcatcatagtcatcttcatcatcttcttg 30020342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 16 - 274
Target Start/End: Original strand, 217750 - 217999
Alignment:
Q  16 ctaaatcattcttttttatctctagtgcacgaggggaattgacagaacattgttttgtacactaccaatgaacgatatgcttggtgtgaatgtacaagtc 115  Q
    |||||| ||||||| || |||||||| |||||| | ||||| ||||||||| ||||||| ||||||| ||| |||||  |||||||||||||| ||||||    
T  217750 ctaaataattctttcttttctctagttcacgagagaaattggcagaacattattttgtaaactaccattgatcgatacacttggtgtgaatgtgcaagtc 217849  T
Q  116 acgtcaaggattccattgtacctgaaggggattcgctgatatacccttttacatattgttgacataactggtgggggaaaatcgaacctaaaggttatgt 215  Q
     | ||||||||| ||| |||         ||||||| | |||||||||||  ||   |||| |||| ||||||||||| |||||| |||||||||  | |    
T  217850 tcttcaaggatttcatcgta-------ttgattcgccggtatacccttttgtatcaggttggcatagctggtgggggagaatcgatcctaaaggtagttt 217942  T
Q  216 gttccacacacactttagaatttatgtgcatacttcatcatgttcatcttcatcatctt 274  Q
    ||  | |||||||||| |||||||||||||   ||||| ||||||||||||||||||||    
T  217943 gt--cccacacactttggaatttatgtgcactattcattatgttcatcttcatcatctt 217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University