View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_low_49 (Length: 279)

Name: NF18704_low_49
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_low_49
NF18704_low_49
[»] chr3 (6 HSPs)
chr3 (116-200)||(6139058-6139142)
chr3 (116-200)||(6164373-6164457)
chr3 (116-200)||(13282953-13283042)
chr3 (19-86)||(6138399-6138466)
chr3 (19-86)||(13283948-13284015)
chr3 (82-117)||(13283261-13283296)


Alignment Details
Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 6139058 - 6139142
Alignment:
Q  116 tatatcttgagttgtttcattattaggcaatagatttcaagatttatgaagtgaaataatcaacaagacaggaagatggatgggg 200  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  6139058 tatatcttgagttgtttcattattaggccatagatttcaagatttataaattgaaataatcaacaagacaggaagatggatgggg 6139142  T

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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 116 - 200
Target Start/End: Original strand, 6164373 - 6164457
Alignment:
Q  116 tatatcttgagttgtttcattattaggcaatagatttcaagatttatgaagtgaaataatcaacaagacaggaagatggatgggg 200  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  6164373 tatatcttgagttgtttcattattaggccattgatttcaagatttatgaagtgaaataatcaacaagacaggaggatggatgggg 6164457  T

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Target: chr3; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 13283042 - 13282953
Alignment:
Q  116 tatatcttgagttgtttcattattaggcaatagatttcaagatttatgaagtgaaa-----taatcaacaagacaggaagatggatgggg 200  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||||||||||     |||||||||||||||||||||||||||||    
T  13283042 tatatcttgagttgttttattattaggccatagatttcaagatttatgaagtgaaatggagtaatcaacaagacaggaagatggatgggg 13282953  T

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Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 6138399 - 6138466
Alignment:
Q  19 ttacattgcatactccatcagaaaaattagaaaagtgatctcaaatgcaaattattttatcgaaactt 86  Q
    |||||||||||| |||||||||||||||| || ||||||| ||||| ||||||||||||| |||||||    
T  6138399 ttacattgcatagtccatcagaaaaattaaaatagtgatcacaaatacaaattattttattgaaactt 6138466  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 13284015 - 13283948
Alignment:
Q  19 ttacattgcatactccatcagaaaaattagaaaagtgatctcaaatgcaaattattttatcgaaactt 86  Q
    |||||||||||| |||||||||||||||| || ||||||| ||||| ||||||||||||| |||||||    
T  13284015 ttacattgcatagtccatcagaaaaattaaaatagtgatcacaaatacaaattattttattgaaactt 13283948  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 117
Target Start/End: Complemental strand, 13283296 - 13283261
Alignment:
Q  82 aacttgcattttcctttacagattaatccaaagtta 117  Q
    ||||||||||||||||| ||||||||||||||||||    
T  13283296 aacttgcattttcctttgcagattaatccaaagtta 13283261  T

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