View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_58 (Length: 250)
Name: NF18704_low_58
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 51846247 - 51846479
Alignment:
| Q |
1 |
tcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatcatcattcttgaaatcattacaggaaaattcccttctcaa |
100 |
Q |
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| T |
51846247 |
tcctgattacgttctttaccaacatgtttcacagaaaaccgatgtttattgtctcggaatcatcattcttgaaatcattacaggaaaattcccttctcaa |
51846346 |
T |
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| Q |
101 |
tatcacagtaatggtaaaggtggtacagatgttgttcaatgggtgttcacagcaatttctgagagaagagaagctgaattgattgatccagagttaacag |
200 |
Q |
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| T |
51846347 |
tatcacagtaatggtaaaggtggtactgatgttgttcaatgggtgttcacagcaatttctgagagaagagaagctgaattgattgatccagagttaacag |
51846446 |
T |
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| Q |
201 |
caaacaatcaagattcaattaatcatatgttgc |
233 |
Q |
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| T |
51846447 |
caaacaatcaagattcaattaatcatatgttgc |
51846479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 18627412 - 18627242
Alignment:
| Q |
27 |
tttcacagaaaaccgatgtttattgtctcggaatcatcattcttgaaatcattacaggaaaattcccttctcaatatcacagtaatggtaaaggtggtac |
126 |
Q |
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|||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||||||| || |
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| T |
18627412 |
tttcgcagaaagccgatgtttattgtctcggaatcatcattcttgaactcattacaggaaaattcccttctcagtatcatagtaacggtaaaggtggaac |
18627313 |
T |
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| Q |
127 |
agatgttgttcaatgggtgttcacagcaatttctgagagaagagaagctgaattgattgatccagagttaa |
197 |
Q |
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| T |
18627312 |
cgatgttgttcaatgggtcctcacagcaatttctgagagaagagaagctgaattgattgatcctgagttaa |
18627242 |
T |
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