View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_61 (Length: 246)
Name: NF18704_low_61
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_61 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 4 - 206
Target Start/End: Complemental strand, 26465587 - 26465385
Alignment:
| Q |
4 |
ggagcagcacagagcatgtaaaagcaatgatagtttctctctgggtcagaaacttggcaaacacgtgatctttcaaggaggttcatacggattgcagctc |
103 |
Q |
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| T |
26465587 |
ggagctgcacaaagcatgtaaaagcaatgatagtttctctccgggtcagaaacttggcaaacacgagatctttcaaggaggtacgtacggatcgcagctc |
26465488 |
T |
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| Q |
104 |
cagaaatcttcccattcttgtcaaattgaatttcaacaaacttaccaaaacgactgccaaaaaatccaataattttgtaagacaaactcaaatggaaatt |
203 |
Q |
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| T |
26465487 |
cagaaatcttcccattcttgtcaaattgaatttcaacaaacttaccaaaacgactgccaaaaaattcaataattttgtaaaacaaattcaaatggaaatt |
26465388 |
T |
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| Q |
204 |
atg |
206 |
Q |
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||| |
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| T |
26465387 |
atg |
26465385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 29902522 - 29902624
Alignment:
| Q |
58 |
tggcaaacacgtgatctttcaaggaggttcatacggattgcagctccagaaa-tcttcccattcttgtcaaattgaatttcaacaaacttaccaaaacga |
156 |
Q |
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| T |
29902522 |
tggcaaacacgtgatctttccagcaggtaagttctgatagcagctccagaaattcttccc-ttctggtcaaattgaatctccacaaacttaccaaaacga |
29902620 |
T |
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| Q |
157 |
ctgc |
160 |
Q |
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|||| |
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| T |
29902621 |
ctgc |
29902624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 13858223 - 13858289
Alignment:
| Q |
7 |
gcagcacagagcatgtaaaagcaatgatagtttctctctgggtcagaaacttggcaaacacgtgatc |
73 |
Q |
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| T |
13858223 |
gcagcacaaagcatataaaagcaatgataatttctctcaggatcagaaacttgacaaacacgtgatc |
13858289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 3952545 - 3952509
Alignment:
| Q |
124 |
tcaaattgaatttcaacaaacttaccaaaacgactgc |
160 |
Q |
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| T |
3952545 |
tcaaactgaatttcaacaaacttcccaaaacgactgc |
3952509 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 43 - 160
Target Start/End: Complemental strand, 47694342 - 47694225
Alignment:
| Q |
43 |
tctgggtcagaaacttggcaaacacgtgatctttcaaggaggttcatacggattgcagctccagaaatcttcccattcttgtcaaattgaatttcaacaa |
142 |
Q |
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| T |
47694342 |
tctgggtcattaacttggcaaacccgtgatctctcaagaaggtacgtacgaatggctgcgcctgagattcttccactcttatcaaattggatctcaacaa |
47694243 |
T |
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| Q |
143 |
acttaccaaaacgactgc |
160 |
Q |
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| T |
47694242 |
acttaccaaaacgactgc |
47694225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 39806552 - 39806482
Alignment:
| Q |
7 |
gcagcacagagcatgtaaaagcaatgatagtttctctctgggtcagaaacttggcaaacacgtgatctttc |
77 |
Q |
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||||||||||||||||| || |||||||| |||||||| || || || | |||||||||||||||||||| |
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| T |
39806552 |
gcagcacagagcatgtagaaacaatgataatttctctcaggatctgacagctggcaaacacgtgatctttc |
39806482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 160
Target Start/End: Original strand, 52154454 - 52154511
Alignment:
| Q |
103 |
ccagaaatcttcccattcttgtcaaattgaatttcaacaaacttaccaaaacgactgc |
160 |
Q |
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||||||||| | || || ||||||||||| || |||||||| |||||||||||||||| |
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| T |
52154454 |
ccagaaatccttcccttgttgtcaaattgtatctcaacaaatttaccaaaacgactgc |
52154511 |
T |
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