View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_low_7 (Length: 589)

Name: NF18704_low_7
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_low_7
NF18704_low_7
[»] chr6 (13 HSPs)
chr6 (16-575)||(6954167-6954726)
chr6 (16-574)||(6921002-6921556)
chr6 (16-478)||(6942609-6943077)
chr6 (124-574)||(6934989-6935424)
chr6 (248-574)||(6947760-6948086)
chr6 (133-291)||(6947597-6947755)
chr6 (370-494)||(20770594-20770718)
chr6 (370-427)||(17369675-17369732)
chr6 (506-574)||(6943092-6943160)
chr6 (138-239)||(20770819-20770920)
chr6 (368-486)||(24254426-24254544)
chr6 (120-243)||(17369850-17369973)
chr6 (30-107)||(6947493-6947572)
[»] chr7 (51 HSPs)
chr7 (30-574)||(1985617-1986161)
chr7 (120-291)||(15571650-15571821)
chr7 (356-486)||(19344563-19344693)
chr7 (120-279)||(14076803-14076962)
chr7 (120-279)||(14386831-14386990)
chr7 (118-264)||(13416661-13416807)
chr7 (370-491)||(18514789-18514910)
chr7 (370-439)||(14076677-14076746)
chr7 (370-439)||(14386705-14386774)
chr7 (370-491)||(15571897-15572018)
chr7 (370-558)||(13416913-13417113)
chr7 (370-454)||(660849-660933)
chr7 (370-466)||(22100465-22100561)
chr7 (367-481)||(22028585-22028699)
chr7 (370-456)||(22063624-22063710)
chr7 (370-466)||(19604465-19604561)
chr7 (388-476)||(22080830-22080918)
chr7 (367-486)||(19351068-19351187)
chr7 (370-444)||(20352089-20352163)
chr7 (375-445)||(22021385-22021455)
chr7 (391-456)||(9807806-9807871)
chr7 (367-439)||(19325984-19326056)
chr7 (388-476)||(22070073-22070161)
chr7 (370-438)||(29454105-29454173)
chr7 (370-438)||(29881256-29881324)
chr7 (17-68)||(18514468-18514519)
chr7 (506-573)||(18514946-18515013)
chr7 (386-445)||(20338917-20338976)
chr7 (372-483)||(36260208-36260319)
chr7 (370-476)||(6864809-6864914)
chr7 (203-285)||(19344422-19344504)
chr7 (370-432)||(29874517-29874579)
chr7 (370-438)||(12819918-12819986)
chr7 (384-480)||(15443922-15444018)
chr7 (370-438)||(29106814-29106882)
chr7 (384-444)||(29445672-29445732)
chr7 (370-438)||(29867236-29867304)
chr7 (370-438)||(29899374-29899442)
chr7 (515-574)||(14076559-14076618)
chr7 (515-574)||(14386587-14386646)
chr7 (367-442)||(19357906-19357981)
chr7 (370-444)||(20374505-20374579)
chr7 (372-438)||(36263053-36263119)
chr7 (370-439)||(20058059-20058128)
chr7 (370-442)||(18952907-18952979)
chr7 (370-442)||(18982954-18983026)
chr7 (370-442)||(18997600-18997672)
chr7 (217-285)||(19374897-19374964)
chr7 (391-427)||(20133340-20133376)
chr7 (391-427)||(20140841-20140877)
chr7 (370-438)||(29859454-29859522)
[»] scaffold0354 (2 HSPs)
scaffold0354 (16-279)||(7619-7875)
scaffold0354 (372-427)||(7474-7529)
[»] chr4 (16 HSPs)
chr4 (370-481)||(53774797-53774908)
chr4 (370-481)||(8443456-8443567)
chr4 (370-444)||(11970984-11971058)
chr4 (370-445)||(3565737-3565812)
chr4 (370-476)||(11981685-11981791)
chr4 (370-444)||(3557720-3557794)
chr4 (370-476)||(3560960-3561066)
chr4 (406-481)||(10475164-10475239)
chr4 (383-481)||(10464226-10464324)
chr4 (372-445)||(837769-837842)
chr4 (358-414)||(53790577-53790633)
chr4 (372-415)||(19359160-19359203)
chr4 (370-444)||(6372439-6372513)
chr4 (370-427)||(6392835-6392892)
chr4 (384-432)||(1686301-1686349)
chr4 (373-481)||(8447659-8447767)
[»] chr2 (9 HSPs)
chr2 (370-491)||(14514847-14514968)
chr2 (372-439)||(20975557-20975624)
chr2 (367-444)||(18908808-18908885)
chr2 (367-444)||(18920764-18920841)
chr2 (367-443)||(18913556-18913632)
chr2 (383-438)||(25698507-25698562)
chr2 (370-443)||(554471-554544)
chr2 (528-573)||(14514748-14514793)
chr2 (370-440)||(25377072-25377142)
[»] chr5 (9 HSPs)
chr5 (367-453)||(29597551-29597637)
chr5 (367-481)||(29647633-29647747)
chr5 (374-490)||(18964836-18964952)
chr5 (367-445)||(29642352-29642430)
chr5 (386-444)||(24330917-24330975)
chr5 (205-285)||(29597419-29597499)
chr5 (513-574)||(18964978-18965039)
chr5 (387-436)||(23086784-23086833)
chr5 (205-285)||(29647809-29647889)
[»] chr1 (8 HSPs)
chr1 (370-438)||(4570927-4570995)
chr1 (370-439)||(50645487-50645556)
chr1 (370-438)||(10218985-10219053)
chr1 (370-438)||(39379063-39379131)
chr1 (384-466)||(15961200-15961282)
chr1 (386-444)||(21855401-21855459)
chr1 (370-435)||(4014967-4015032)
chr1 (370-427)||(4016774-4016831)
[»] scaffold0867 (1 HSPs)
scaffold0867 (370-466)||(4671-4767)
[»] chr3 (4 HSPs)
chr3 (370-432)||(3625740-3625802)
chr3 (370-440)||(25901281-25901351)
chr3 (370-440)||(25915299-25915369)
chr3 (387-443)||(3837904-3837960)
[»] chr8 (6 HSPs)
chr8 (404-444)||(42846461-42846501)
chr8 (370-436)||(29390288-29390354)
chr8 (384-454)||(11339435-11339505)
chr8 (384-454)||(11345117-11345187)
chr8 (370-444)||(27618485-27618559)
chr8 (384-436)||(11338592-11338644)
[»] scaffold0267 (1 HSPs)
scaffold0267 (387-443)||(13385-13441)


Alignment Details
Target: chr6 (Bit Score: 496; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 16 - 575
Target Start/End: Original strand, 6954167 - 6954726
Alignment:
Q  16 aatataatcaaatcaaaaccatggtatgaaaataatcacaaaatacattgtaccatagacaagctagcacaaattcaaacaagtaaatcatcagnnnnnn 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |          
T  6954167 aatataatcaaatcaaaaccatggtatgaaaataatcacaaaatacattgtaccatagacaagctaacacaaattcaaacaagtaaatcatcggaaaaaa 6954266  T
Q  116 nncatactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattattt 215  Q
      ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||    
T  6954267 aacatactttcaagaagtcgataccaagctttcaacatatcccttggcagcggaccaccaaattttattggtacttttaattctcgttgctctattattt 6954366  T
Q  216 ttcaaattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaaaacacagtggcttcaatcgaggacaaagaa 315  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  6954367 tttaaattatagagaattgcttggtctagtaaattgattgcaaatatcaatgtatcaccatccttagaaaaacacagtggcatcaatcgaggacaaagaa 6954466  T
Q  316 ataatgaattgttattgaactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattc 415  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954467 ataatgaatcgttattgaactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattc 6954566  T
Q  416 cttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttca 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954567 cttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttca 6954666  T
Q  516 tcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatg 575  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6954667 tcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagatg 6954726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 16 - 574
Target Start/End: Original strand, 6921002 - 6921556
Alignment:
Q  16 aatataatcaaatcaaaaccatggtatgaaaataatcacaaaatacattgtaccatagacaagctagcacaaattcaaacaagtaaatcatcagnnnnnn 115  Q
    ||||||||||||||||||||||| |||   ||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |          
T  6921002 aatataatcaaatcaaaaccatgatat---aattatcacaaaatacattgtaccatacacaagctaacacaaattcaaacaagtaaatcatc-gaacaaa 6921097  T
Q  116 nncatactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattattt 215  Q
      | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||| |||  || |||||||||||| |    
T  6921098 aacttactttcaagaagtcgataccaagctttcaacatatcccttggcagtgaaccacaaaattttattggtactttcaattatctttgctctattatct 6921197  T
Q  216 ttcaaattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaaaacacagtggcttcaatcgaggacaaagaa 315  Q
    ||| |||||||||||||||| |||||| ||| |||||| |||||||||||||||||||||||||  |||||||||| |||  |||||||||  | | |||    
T  6921198 ttccaattatagagaattgcctggtctggtatattgatagcaaatatcaatgtatcaccattctcggaaaaacacattggtgtcaatcgagagcgatgaa 6921297  T
Q  316 ataatgaattgttattgaactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattc 415  Q
    |||||||||  ||||  ||||||| | |||||||||  ||||||||| ||| | ||||||||||||  ||||||||||||||||||||||||||||||||    
T  6921298 ataatgaatcattatataactccttagttttaaaattgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattc 6921397  T
Q  416 cttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttca 515  Q
    |||||||||||| ||||||||||||||||| ||  |||||||||| ||| |||||||||||||||||||||||||||||| | ||     ||||||||||    
T  6921398 cttcatttgccagataacaaaatgggttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttca 6921497  T
Q  516 tcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagat 574  Q
    ||||||||||| ||||||||||| ||||||||||||||||||| || ||||||||||||    
T  6921498 tcacaacatcgagggagcaacaattgtgtatatgtctctgtccccaaatcaagtgagat 6921556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 16 - 478
Target Start/End: Original strand, 6942609 - 6943077
Alignment:
Q  16 aatataatcaaatcaaaaccatggtatgaaaataatcacaaaatacattgtaccatagacaagctagcacaaattcaaac-------aagtaaatcatca 108  Q
    |||||| | |||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||| ||||||||||||        | | |||| ||||    
T  6942609 aatatattaaaatcaaaaccatgatatggaaataatcacaaaatacattctaccatacacaagctaacacaaattcaaaaccatgatatggaaataatca 6942708  T
Q  109 gnnnnnnnncatactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctct 208  Q
             | |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||    
T  6942709 -aacaaaaacttactttcaagaagttgataccaagctttcaacatatcccttggcagtggaccaccaaattttattggtacttttaattctctttgctct 6942807  T
Q  209 attatttttcaaattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaaaacacagtggcttcaatcgagga 308  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||| | ||    
T  6942808 attatctttcaaattatagagaattgcttggtctagtaaattgattgcaaatatcaatgtatcaccattctcagaaaaacacaatggcctcaatccaaga 6942907  T
Q  309 caaagaaataatgaattgttattgaactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactc 408  Q
    | |  |||||||||||  |||| |||||||||| |||||||||| ||||||||| | | | | ||||||||||  ||||| ||| |||||||||||||||    
T  6942908 cgataaaataatgaatcattatagaactcctgaattttaaaatcgtttagaagatttgtatatctaattttaaggaattgcgtctaagattcttcaactc 6943007  T
Q  409 caaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccat 478  Q
    ||||||||||||||||| |||||||||||| |||||| || ||||||||||| ||| |||||||||||||    
T  6943008 caaattccttcatttgctaaataacaaaataggttttcttaaaatcataagaaaaatagaggcaatccat 6943077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 124 - 574
Target Start/End: Original strand, 6934989 - 6935424
Alignment:
Q  124 ttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattatttttcaaatt 223  Q
    ||||||||||||||||||| ||||||||||| ||||||||| || ||||| || |||||  | |||||||||| ||| ||||| |||||| | || ||||    
T  6934989 ttcaagaagtcgataccaaactttcaacatatcccttggcactgaaccacaaatttttaccgttacttttaattctctttgctgtattatctctccaatt 6935088  T
Q  224 atagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaaaacacagtggcttcaatcgaggacaaagaaataatgaa 323  Q
    |||||||| |||||||||| ||| |||||||||||||||||||||||||||||| |||||||| |||| |||  |||||||||||  |                
T  6935089 atagagaaatgcttggtctggtagattgattgcaaatatcaatgtatcaccattattagaaaagcacaatggaatcaatcgaggagga------------ 6935176  T
Q  324 ttgttattgaactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcattt 423  Q
       | || |  ||| ||| |||||||||||| | ||||| | | | ||||||||||||  |||| |||||||||||||| ||||||||||||||||||||    
T  6935177 ---taataggtctcgtgagttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcattt 6935273  T
Q  424 gccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaaca 523  Q
    ||||||||||| |||||||||| || ||||||||||| ||| ||||||||||||||||| |||||||||| | |   ||   ||||||||||||||||||    
T  6935274 gccaaataacataatgggttttcttaaaatcataagaaaaatagaggcaatccatcaatccagaaagagtaggaaagccatgtagctcttcatcacaaca 6935373  T
Q  524 tcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagat 574  Q
    ||| ||||||||||| | |||| |||||||||||| || ||||||||||||    
T  6935374 tcgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagat 6935424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 248 - 574
Target Start/End: Original strand, 6947760 - 6948086
Alignment:
Q  248 attgattgcaaatatcaatgtatcaccattcttagaaaaacacagtggcttcaatcgaggacaaagaaataatgaattgttattgaactcctgactttta 347  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||  ||||| |||||  |  | |   || |   ||||  ||||| ||| |||||    
T  6947760 attgattgtaaatatcaatgtatcaccattgttagaaaaacacagtggaatcaattgaggaggataataggttggaccattatgaaactcatgaatttta 6947859  T
Q  348 aaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgt 447  Q
    | ||||||| ||||| ||  | ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |    
T  6947860 atatcttttggaagattcacataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggttttct 6947959  T
Q  448 tgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaacaactgtgtata 547  Q
    |||||||||  || ||||| |||||||||||||| ||||||||||||| | || |   ||||||||||||||||||||| |||||||||||| |||||||    
T  6947960 tgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaacatcatgtagctcttcatcacaacatcgagggagcaacaaccgtgtata 6948059  T
Q  548 tgtctctgtcctcatatcaagtgagat 574  Q
    | ||||||||| || ||||||||||||    
T  6948060 tctctctgtccccaaatcaagtgagat 6948086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 133 - 291
Target Start/End: Original strand, 6947597 - 6947755
Alignment:
Q  133 tcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattatttttcaaattatagagaat 232  Q
    ||||| |||||||||||||||| || |||||| || ||||| ||||||| |||||||||||||| ||| || ||||||||| | || ||||||||||||     
T  6947597 tcgatgccaagctttcaacatatccattggcactgaaccacaaaattttgttggtacttttaattctctttactctattatctctccaattatagagaaa 6947696  T
Q  233 tgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaaaacaca 291  Q
    |||||||||| ||| | |||||| ||||||||||||||||||||  |||| ||||||||    
T  6947697 tgcttggtctggtagagtgattgtaaatatcaatgtatcaccatcgttaggaaaacaca 6947755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 370 - 494
Target Start/End: Complemental strand, 20770718 - 20770594
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    ||||||||||||  |||||| |||| || ||||||| ||||||||||||||||||||| ||||||||||  ||||| || | ||||| ||| ||||| |     
T  20770718 aactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaaat 20770619  T
Q  470 gcaatccatcaatacagaaagagtt 494  Q
     ||||||||||| ||| ||||||||    
T  20770618 acaatccatcaacacacaaagagtt 20770594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 17369732 - 17369675
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgcca 427  Q
    ||||||||||||  |||||||||||||| |||||||||||||||||||||||||||||    
T  17369732 aactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 506 - 574
Target Start/End: Original strand, 6943092 - 6943160
Alignment:
Q  506 tagctcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagat 574  Q
    ||||||||||||||||||| | ||||||||||| | ||||||||||||||||| || ||||||||||||    
T  6943092 tagctcttcatcacaacattgagggagcaacaattttgtatatgtctctgtccccaaatcaagtgagat 6943160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 239
Target Start/End: Complemental strand, 20770920 - 20770819
Alignment:
Q  138 accaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattatttttcaaattatagagaattgctt 237  Q
    ||||| |||||||||||| |||| ||| |  |||||||||||| || |||||||| ||| ||| ||  |||||||| ||||||||||||||| |||||||    
T  20770920 accaaactttcaacataatccttagcactataccaccaaatttcataggtactttcaattctctttagtctattatctttcaaattatagaggattgctt 20770821  T
Q  238 gg 239  Q
    ||    
T  20770820 gg 20770819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 368 - 486
Target Start/End: Original strand, 24254426 - 24254544
Alignment:
Q  368 aaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacag 467  Q
    |||||| ||||| || |||||||||||||||| ||| ||||||||||||  ||| ||||| ||||||||||| ||| | |||| ||  | ||| |||||     
T  24254426 aaaactgattttgatgaattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctcttgatatagtgagaaaaacaa 24254525  T
Q  468 aggcaatccatcaatacag 486  Q
    ||||| |||||||| ||||    
T  24254526 aggcagtccatcaacacag 24254544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 120 - 243
Target Start/End: Complemental strand, 17369973 - 17369850
Alignment:
Q  120 tactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattatttttca 219  Q
    ||||||||| |||| |||||||||||||||||||| ||||||| ||    |||   |||| ||| |||| ||| |||  || || ||||||||||| ||     
T  17369973 tactttcaacaagtagataccaagctttcaacatagcccttggaagccttccaaataattctataggtattttcaattttctttactctattatttctcc 17369874  T
Q  220 aattatagagaattgcttggtctc 243  Q
    |||||||||||||| |||||||||    
T  17369873 aattatagagaatttcttggtctc 17369850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 30 - 107
Target Start/End: Original strand, 6947493 - 6947572
Alignment:
Q  30 aaaaccatggtatgaaaataatcacaaaatacattgtac--catagacaagctagcacaaattcaaacaagtaaatcatc 107  Q
    ||||||||| | |||||||||||||| |||| |||||||  |||| | || ||| | ||||| |||||||||||||||||    
T  6947493 aaaaccatgatttgaaaataatcacacaatatattgtacatcatacataaactaactcaaatacaaacaagtaaatcatc 6947572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 51)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 30 - 574
Target Start/End: Original strand, 1985617 - 1986161
Alignment:
Q  30 aaaaccatggtatgaaaataatcacaaaatacattgtac-catagacaagctagcacaaattcaaacaagtaaatcatcagnnnnnnnncatactttcaa 128  Q
    ||||||||| | |||||||||||||| |||| ||||||  |||| |||| ||| ||||||||||||||||||||||||| |        | ||| |||||    
T  1985617 aaaaccatgatttgaaaataatcacacaatatattgtatacatacacaaactaacacaaattcaaacaagtaaatcatc-gaagagaaacttaccttcaa 1985715  T
Q  129 gaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattatttttcaaattataga 228  Q
    ||| ||||||||||||||||||| || ||||||||| || ||||| ||||| |||||||||||||||| ||   | ||||||||| | ||  ||||||||    
T  1985716 gaaatcgataccaagctttcaacgtatcccttggcactgaaccacaaaattctattggtacttttaattctttctactctattatctctcctattataga 1985815  T
Q  229 gaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaaaacacagtggcttcaatcgaggacaaagaaataatgaattgtt 328  Q
    ||| ||||||||||  |  ||||||||||||||||||||||||||||||||  |||||| ||| |||  |||||||||||  |  | |   || |   ||    
T  1985816 gaaatgcttggtctgttggattgattgcaaatatcaatgtatcaccattctcggaaaaatacaatggagtcaatcgaggaggataataggttggaccatt 1985915  T
Q  329 attgaactcctgacttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaa 428  Q
    ||||||| | ||| |||||| ||||| ||||||| ||  | |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  1985916 attgaacccatgaattttaatatcttctagaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaa 1986015  T
Q  429 ataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcggg 528  Q
    | ||||||||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||| | ||||   ||| |||||||||||| |||| |    
T  1986016 agaacaaaatgggttttcttgaaatcataagaaaaatagaggcaatccatcaacacagaaagagttggaacaccatgtagatcttcatcacaatatcgag 1986115  T
Q  529 ggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagat 574  Q
    |||||||||||||||||||| ||||||||| || ||||||||||||    
T  1986116 ggagcaacaactgtgtatatctctctgtccccaaatcaagtgagat 1986161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 120 - 291
Target Start/End: Original strand, 15571650 - 15571821
Alignment:
Q  120 tactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattatttttca 219  Q
    |||||||| |||||||||||||||||||||||||| ||| ||||| ||||||| |  ||||| ||| |||||||||| ||| || ||||||||| | ||     
T  15571650 tactttcaggaagtcgataccaagctttcaacatatcccctggcattggaccaacggatttttttgttacttttaattctctttactctattatatctcc 15571749  T
Q  220 aattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaaaacaca 291  Q
    ||||||| | |||| |||||||||    |||||||||||||||||  |||||||| |||| ||||| |||||    
T  15571750 aattataaacaattacttggtctctacgattgattgcaaatatcacagtatcaccgttctcagaaacacaca 15571821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 356 - 486
Target Start/End: Original strand, 19344563 - 19344693
Alignment:
Q  356 tagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatca 455  Q
    ||||||| || |||||||||||||||  |||||||||||||||| |||||||||||||||| |||| ||||| ||||||||||| || || |||| ||      
T  19344563 tagaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattg 19344662  T
Q  456 taagataaacagaggcaatccatcaatacag 486  Q
    | ||| ||||| ||||| |||||||||||||    
T  19344663 tgagaaaaacaaaggcagtccatcaatacag 19344693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 14076962 - 14076803
Alignment:
Q  120 tactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattatttttca 219  Q
    ||||||| | ||||||||||||||||||||||||||  ||||| |    ||||| ||||| |||||||| ||||||| ||| || ||||||||| | ||     
T  14076962 tactttctaaaagtcgataccaagctttcaacataattcttggaatgcaaccacaaaattctattggtatttttaattctctttactctattatctctcc 14076863  T
Q  220 aattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattct 279  Q
    ||||||||| ||||||||||| || | |||||||| | |||||||||||| |||| ||||    
T  14076862 aattatagataattgcttggtttcctgaattgattcccaatatcaatgtaccacctttct 14076803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 120 - 279
Target Start/End: Complemental strand, 14386990 - 14386831
Alignment:
Q  120 tactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattatttttca 219  Q
    ||||||| | ||||||||||||||||||||||||||  ||||| |    ||||| ||||| |||||||| ||||||| ||| || ||||||||| | ||     
T  14386990 tactttctaaaagtcgataccaagctttcaacataattcttggaatgcaaccacaaaattctattggtatttttaattctctttactctattatctctcc 14386891  T
Q  220 aattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattct 279  Q
    ||||||||| ||||||||||| || | |||||||| | |||||||||||| |||| ||||    
T  14386890 aattatagataattgcttggtttcctgaattgattcccaatatcaatgtaccacctttct 14386831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 13416661 - 13416807
Alignment:
Q  118 catactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattattttt 217  Q
    |||||||||  |||||||||||||||||||||||||| ||||||||   | |||||||||||| ||||| ||||||||| ||| || ||||||||| | |    
T  13416661 catactttcttgaagtcgataccaagctttcaacatatcccttggcgtcgaaccaccaaatttgattgggacttttaattctctttactctattatctct 13416760  T
Q  218 caaattatagagaattgcttggtctcgtaaattgattgcaaatatca 264  Q
    |  ||| ||| ||||| |||||||| |   |||||||||||||||||    
T  13416761 cctattgtagtgaattacttggtctagacgattgattgcaaatatca 13416807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 370 - 491
Target Start/End: Original strand, 18514789 - 18514910
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    ||||||||||||  |||||||||||||| | ||||||||||||||| | ||||| ||| ||||  |||||| |||| |||||||||||||| ||||| |     
T  18514789 aactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatcataagaaaaacacat 18514888  T
Q  470 gcaatccatcaatacagaaaga 491  Q
    ||||||||| || |||||||||    
T  18514889 gcaatccattaaaacagaaaga 18514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 14076746 - 14076677
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatg 439  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14076746 aactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 439
Target Start/End: Complemental strand, 14386774 - 14386705
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatg 439  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||| |||||    
T  14386774 aactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 491
Target Start/End: Original strand, 15571897 - 15572018
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    |||||||||||   ||||||  |||||| |||||||||||||| ||| |||||||||| || ||||||||||||   |||||||||||||| ||||| ||    
T  15571897 aactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatcataagaaaaacaaag 15571996  T
Q  470 gcaatccatcaatacagaaaga 491  Q
     |||||||| || |||||||||    
T  15571997 acaatccataaacacagaaaga 15572018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 370 - 558
Target Start/End: Original strand, 13416913 - 13417113
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    ||||||||||||  |||| |  |||||| ||||||||||||||||||||||||||||| || | ||||| |||||| || ||||||||||| ||||| ||    
T  13416913 aactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaaag 13417012  T
Q  470 gcaatccatcaatacagaaagagt------------tgcagcaccggttagctcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtc 557  Q
     |||||  |||| | |||||||||            || || | ||  ||||||||| ||||||||||| || ||||||||||||||||||||||| |||    
T  13417013 acaatcattcaacatagaaagagtaggaggaagtattggaggatcgcgtagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtctcagtc 13417112  T
Q  558 c 558  Q
    |    
T  13417113 c 13417113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 454
Target Start/End: Original strand, 660849 - 660933
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatc 454  Q
    ||||||||||||  |||||||||||||| |||||||||| |||||||||||| ||||| ||||||||| | ||||  ||||||||    
T  660849 aactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaacgagtttgtttgaaatc 660933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 466
Target Start/End: Complemental strand, 22100561 - 22100465
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaaca 466  Q
    |||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| |||||||||| ||| |||||    
T  22100561 aactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaaca 22100465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 367 - 481
Target Start/End: Complemental strand, 22028699 - 22028585
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaaca 466  Q
    |||||||||| ||||  |||||||||||||| |||||||||||| | ||| |||||| ||| ||||||||||||||||  ||||   | | ||| |||||    
T  22028699 gaaaactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaaca 22028600  T
Q  467 gaggcaatccatcaa 481  Q
     ||||||||||||||    
T  22028599 aaggcaatccatcaa 22028585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 456
Target Start/End: Complemental strand, 22063710 - 22063624
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcat 456  Q
    |||||||||| |  || ||||||||||| |||| || ||||||||||||||||||||| ||||||||||| ||||  ||||||||||    
T  22063710 aactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagtttgtttgaaatcat 22063624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 370 - 466
Target Start/End: Original strand, 19604465 - 19604561
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaaca 466  Q
    ||||||||||||  ||||||||||| || ||||||||||||||||||||||| ||||| |||| ||| || ||||| |  ||||||| ||| |||||    
T  19604465 aactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaaca 19604561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 388 - 476
Target Start/End: Complemental strand, 22080918 - 22080830
Alignment:
Q  388 gagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatcc 476  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||  |||||||||| ||| ||||| || ||||||    
T  22080918 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtttgtttgaaatcatgagaaaaacaaagacaatcc 22080830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 367 - 486
Target Start/End: Original strand, 19351068 - 19351187
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaaca 466  Q
    ||||||||||||| |  ||| |||||||||| || ||||||||||||||| |||| ||||| | ||||||||||||  | |||| ||  | ||| |||||    
T  19351068 gaaaactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggtccttttgagattgtgagaaaaaca 19351167  T
Q  467 gaggcaatccatcaatacag 486  Q
     || ||||||||||||||||    
T  19351168 tagacaatccatcaatacag 19351187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 20352163 - 20352089
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    ||||||||||||  | ||||||||| || ||||||||||||||||||||||||| ||| || |||||||| ||||    
T  20352163 aactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 375 - 445
Target Start/End: Complemental strand, 22021455 - 22021385
Alignment:
Q  375 attttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtttt 445  Q
    |||||||  ||||||||||||||||||||||||||| | ||| |||| ||||| ||||| |||||||||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggtttt 22021385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 391 - 456
Target Start/End: Complemental strand, 9807871 - 9807806
Alignment:
Q  391 tccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcat 456  Q
    ||||||| ||||||||||||||||||||||| ||||| ||||| |||| |||||| || |||||||    
T  9807871 tccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttcttcaaatcat 9807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 367 - 439
Target Start/End: Original strand, 19325984 - 19326056
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatg 439  Q
    ||||||| ||||| || |||||||||||||||| ||| ||||||||||||  ||| ||||| |||||||||||    
T  19325984 gaaaactgattttgatgaattgagtccaagattgttctactccaaattccgacatatgccatataacaaaatg 19326056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 476
Target Start/End: Complemental strand, 22070161 - 22070073
Alignment:
Q  388 gagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatcc 476  Q
    |||||||||| |||| ||||||||||| |||||||||||| |||| |||||| |||   |||||||||| ||| ||||| || ||||||    
T  22070161 gagtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttcgtttgaaatcatgagaaaaacaaagacaatcc 22070073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 29454105 - 29454173
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    ||||||||||||  |||||||||||||| |||||||||||||||| | ||||  |||| ||||||||||    
T  29454105 aactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 29881324 - 29881256
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    |||||||| |||  |||||||||||||| |||||||| ||||||| |||||||||||||| || |||||    
T  29881324 aactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaat 29881256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 18514468 - 18514519
Alignment:
Q  17 atataatcaaatcaaaaccatggtatgaaaataatcacaaaatacattgtac 68  Q
    |||||||||||||||||||||| |||||||||||| |||  |||||||||||    
T  18514468 atataatcaaatcaaaaccatgatatgaaaataatgacacgatacattgtac 18514519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 506 - 573
Target Start/End: Original strand, 18514946 - 18515013
Alignment:
Q  506 tagctcttcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgaga 573  Q
    |||||||| || |||| |||| |||||||| ||||||||||||||||||||| ||| |||||| ||||    
T  18514946 tagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgaga 18515013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 386 - 445
Target Start/End: Complemental strand, 20338976 - 20338917
Alignment:
Q  386 ttgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtttt 445  Q
    |||||||||||| ||||||||||| ||||||||||||| ||| || |||||||| |||||    
T  20338976 ttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagtttt 20338917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 372 - 483
Target Start/End: Complemental strand, 36260319 - 36260208
Alignment:
Q  372 ctaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggc 471  Q
    ||||||||||| | |||| ||||||| ||||||||||||||||| | ||| | ||| ||||||||||  ||||| ||| |||||| ||| || || || |    
T  36260319 ctaattttaataagttgaatccaagactcttcaactccaaattcttccatcttccatataacaaaatcagttttcttgtaatcattagaaaagcaaagac 36260220  T
Q  472 aatccatcaata 483  Q
    |||||| |||||    
T  36260219 aatccaacaata 36260208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 476
Target Start/End: Original strand, 6864809 - 6864914
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    ||||| ||||||  || ||||||||||| ||||||||||||||||||||||||  ||| || || ||||| ||||  |||||||||| ||| ||| ||||    
T  6864809 aactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttgtttgaaatcatgagaaaaatagag 6864907  T
Q  470 gcaatcc 476  Q
     ||||||    
T  6864908 acaatcc 6864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 19344422 - 19344504
Alignment:
Q  203 tgctctattatttttcaaattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaa 285  Q
    ||||||||| | | ||||||||||||||||||||||||||  || | || |||| |||| || |||||||||||| |||||||    
T  19344422 tgctctattgtctctcaaattatagagaattgcttggtcttttatagtgtttgccaatagcagtgtatcaccatttttagaaa 19344504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 29874579 - 29874517
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataa 432  Q
    ||||||||||||  ||| |||||||||| |||||||| ||||||| |||||||||||| ||||    
T  29874579 aactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 12819918 - 12819986
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    |||| |||||||  ||||||||||| |||| |||||||||||||||| |||| ||||| | ||||||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaat 12819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 480
Target Start/End: Complemental strand, 15444018 - 15443922
Alignment:
Q  384 aattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatca 480  Q
    |||||||||||||| |||||||||||| | |||||||| ||||| | ||||||    ||| | ||| |||||||||| ||||| || ||||||||||    
T  15444018 aattgagtccaagactcttcaactccatactccttcatatgccataaaacaaatccagttgtattggaatcataagaaaaacaaagacaatccatca 15443922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 29106882 - 29106814
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    ||||||||||||  | |||||||||||| |||||||| ||||||| |||||| ||||| | ||||||||    
T  29106882 aactaattttaaaaagttgagtccaagactcttcaaccccaaatttcttcatctgccatacaacaaaat 29106814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 384 - 444
Target Start/End: Original strand, 29445672 - 29445732
Alignment:
Q  384 aattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    |||||||||||||| |||||||| || ||||||||||| ||||| |||| ||||| |||||    
T  29445672 aattgagtccaagagtcttcaacccctaattccttcatctgccatataagaaaatcggttt 29445732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 29867304 - 29867236
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    |||||||| |||  |||||||||||||| |||||||| || |||| |||||||||||| |||| |||||    
T  29867304 aactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaat 29867236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 29899442 - 29899374
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    |||||||||| |  ||||||||||| || |||||||| ||||||| |||||| ||||| ||||||||||    
T  29899442 aactaatttttaaaaattgagtccaggactcttcaaccccaaatttcttcatctgccatataacaaaat 29899374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 14076618 - 14076559
Alignment:
Q  515 atcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagat 574  Q
    |||||||||| | ||||| ||||| |||||||||||||| |||| || ||||||||||||    
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagat 14076559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 574
Target Start/End: Complemental strand, 14386646 - 14386587
Alignment:
Q  515 atcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagat 574  Q
    |||||||||| | ||||| ||||| |||||||||||||| |||| || ||||||||||||    
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagat 14386587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 367 - 442
Target Start/End: Complemental strand, 19357981 - 19357906
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggt 442  Q
    ||||||||||||| |  |||||||||||||| |||| ||||||||||||| |||| | ||| | ||| ||||||||    
T  19357981 gaaaactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 20374505 - 20374579
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    ||||||||||||  | |||| |||| || ||| ||||||||||||||||||||| ||| || |||||||| ||||    
T  20374505 aactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 36263119 - 36263053
Alignment:
Q  372 ctaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    |||| |||||| | |||||||||||| ||||||||||||||||| | ||| | ||| ||||||||||    
T  36263119 ctaactttaatgagttgagtccaagactcttcaactccaaattcttccatcttccatataacaaaat 36263053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 20058059 - 20058128
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatg 439  Q
    ||||||||||||  ||||||  |||||| ||||||||||  ||||||| ||||| ||| |||||||||||    
T  20058059 aactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatg 20058128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 18952907 - 18952979
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggt 442  Q
    ||||||||||||  || |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18952907 aactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18952979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #46
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 18982954 - 18983026
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggt 442  Q
    ||||||||||||  || |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18982954 aactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18983026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #47
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 442
Target Start/End: Original strand, 18997600 - 18997672
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggt 442  Q
    ||||||||||||  || |||||||| || |  |||||||||||||||||||| ||||| || | |||||||||    
T  18997600 aactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18997672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #48
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 217 - 285
Target Start/End: Complemental strand, 19374964 - 19374897
Alignment:
Q  217 tcaaattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaa 285  Q
    ||||||||||||||||||||||||||  || | || |||| |||| || |||||||||||| |||||||    
T  19374964 tcaaattatagagaattgcttggtct-ttatagtgtttgccaatagcagtgtatcaccatttttagaaa 19374897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #49
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 20133340 - 20133376
Alignment:
Q  391 tccaagattcttcaactccaaattccttcatttgcca 427  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  20133340 tccaagaatcttcaactccaaattctttcatttgcca 20133376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #50
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 20140841 - 20140877
Alignment:
Q  391 tccaagattcttcaactccaaattccttcatttgcca 427  Q
    ||||||| | |||||||||||||||||||||||||||    
T  20140841 tccaagaattttcaactccaaattccttcatttgcca 20140877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #51
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 29859522 - 29859454
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    ||||||||||||  ||| | |||||||| |||||||||||||||| |||||| | ||| ||||| ||||    
T  29859522 aactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaat 29859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 279
Target Start/End: Complemental strand, 7875 - 7619
Alignment:
Q  16 aatataatcaaatcaaaaccatggtatgaaaataatcacaaaatacattgtaccatagacaagctagcacaaattcaaacaagtaaatcatcagnnnnnn 115  Q
    ||||||||||||||||||||||  |||||||||||||||| || ||| |||||     |||| ||| || |||||||||||||||||| |||            
T  7875 aatataatcaaatcaaaaccataatatgaaaataatcacacaagacaatgtac-----acaaactaacaaaaattcaaacaagtaaatgatc--gagcaa 7783  T
Q  116 nncatactttcaagaagtcgataccaagctttcaacataacccttggcagtggaccaccaaattttattggtacttttaatcctcgttgctctattattt 215  Q
      ||||| |||||||||||| |||||||||||| ||||| ||||||||| || |||||  ||||| ||||||||||||||| ||  || ||||||||| |    
T  7782 aacataccttcaagaagtcggtaccaagctttctacatatcccttggcattgaaccacggaatttgattggtacttttaattctatttactctattatct 7683  T
Q  216 ttcaaattatagagaattgcttggtctcgta-aattgattgcaaatatcaatgtatcaccattct 279  Q
     |||||||||||| ||||||| ||||| |||  |||| |||||||||||||||||||||||||||    
T  7682 ctcaaattatagacaattgctaggtct-gtatgattggttgcaaatatcaatgtatcaccattct 7619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 427
Target Start/End: Complemental strand, 7529 - 7474
Alignment:
Q  372 ctaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgcca 427  Q
    ||||||||||  ||||||  |||||| || ||||||||||||||||||||||||||    
T  7529 ctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgcca 7474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 370 - 481
Target Start/End: Complemental strand, 53774908 - 53774797
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||  || ||||||||||| ||||| |     
T  53774908 aactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaaacaaat 53774809  T
Q  470 gcaatccatcaa 481  Q
     |||||||||||    
T  53774808 acaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 370 - 481
Target Start/End: Original strand, 8443456 - 8443567
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    ||||||||||||  |||||| ||||||| || | ||||||||| |||||||| |||||||||||| |||| ||| | |||||||||||||| ||||| ||    
T  8443456 aactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaaacaaag 8443555  T
Q  470 gcaatccatcaa 481  Q
     || ||||||||    
T  8443556 acagtccatcaa 8443567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 370 - 444
Target Start/End: Original strand, 11970984 - 11971058
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    |||||||| |||  |||||||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||    
T  11970984 aactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagttt 11971058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 370 - 445
Target Start/End: Complemental strand, 3565812 - 3565737
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtttt 445  Q
    ||||||||||||  |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| ||||||    
T  3565812 aactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggtttt 3565737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 370 - 476
Target Start/End: Original strand, 11981685 - 11981791
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttg-aaatcataagataaacaga 468  Q
    ||||||||||||  ||| ||||||| || ||||| ||||||||||||||||||||||| ||||||||||| | ||||||| ||||||| ||| ||||| |    
T  11981685 aactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgag-tttgttgaaaatcatgagaaaaacaaa 11981783  T
Q  469 ggcaatcc 476  Q
    | ||||||    
T  11981784 gacaatcc 11981791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 3557794 - 3557720
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    ||||||||||||  |||||||||||||| |||||||| |||||||||||||| ||||| |||| ||||| |||||    
T  3557794 aactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggttt 3557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 370 - 476
Target Start/End: Original strand, 3560960 - 3561066
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    ||||||||||||  |||||||||||||| |||||||| |||||||  ||||| |||||||||| ||||| |||||  ||| ||  |||||| ||||| ||    
T  3560960 aactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaataagaaaaacaaag 3561059  T
Q  470 gcaatcc 476  Q
    |||||||    
T  3561060 gcaatcc 3561066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 406 - 481
Target Start/End: Complemental strand, 10475239 - 10475164
Alignment:
Q  406 ctccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaa 481  Q
    ||||||| |||||||||||||| |||||||||||||| || | |||||||||| | ||||| || |||||||||||    
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10475164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 383 - 481
Target Start/End: Complemental strand, 10464324 - 10464226
Alignment:
Q  383 caattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaatccatcaa 481  Q
    ||||||| ||||||| || | | | ||||| |||||||||||||| |||||||||||||| || | |||||||||| | ||||| || |||||||||||    
T  10464324 caattgaatccaagactcctgatccccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10464226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 372 - 445
Target Start/End: Complemental strand, 837842 - 837769
Alignment:
Q  372 ctaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtttt 445  Q
    ||||||||||  |||||| ||||||| |||| ||| ||||| | |||||||||||| |||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggtttt 837769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 358 - 414
Target Start/End: Complemental strand, 53790633 - 53790577
Alignment:
Q  358 gaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaatt 414  Q
    ||||| || |||||||||||||||  |||||||||||||||| ||||| ||||||||    
T  53790633 gaagattctgaaaactaattttaagaaattgagtccaagattgttcaaatccaaatt 53790577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 372 - 415
Target Start/End: Complemental strand, 19359203 - 19359160
Alignment:
Q  372 ctaattttaatcaattgagtccaagattcttcaactccaaattc 415  Q
    ||||||||||| | |||||||||||| |||||||||||||||||    
T  19359203 ctaattttaataagttgagtccaagactcttcaactccaaattc 19359160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 6372513 - 6372439
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    |||||||||||   |||||| || |||| |||| ||||||| | |||||||||||||| |||| |||||||||||    
T  6372513 aactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggttt 6372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 6392892 - 6392835
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgcca 427  Q
    ||||||||||||  |||||| ||||||| || | ||||||||| ||||||||||||||    
T  6392892 aactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgcca 6392835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 432
Target Start/End: Original strand, 1686301 - 1686349
Alignment:
Q  384 aattgagtccaagattcttcaactccaaattccttcatttgccaaataa 432  Q
    |||||||||||||| || ||||| |||||||||||||| ||||| ||||    
T  1686301 aattgagtccaagactcgtcaacgccaaattccttcatctgccatataa 1686349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 373 - 481
Target Start/End: Original strand, 8447659 - 8447767
Alignment:
Q  373 taattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggca 472  Q
    |||||||||  |||||| ||||||| || | |||||| || |||||||| |||||||||| |  ||| ||| | ||||||||||| || ||||| || ||    
T  8447659 taattttaaataattgaatccaagactcatgaactccgaaatccttcatctgccaaataaaatgatgagttctcttgaaatcatatgaaaaacaaagaca 8447758  T
Q  473 atccatcaa 481  Q
     ||||||||    
T  8447759 gtccatcaa 8447767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 4e-24; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 370 - 491
Target Start/End: Complemental strand, 14514968 - 14514847
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagag 469  Q
    ||||||||||||  |||||||||||||| ||||||||||||||||| | ||||| ||| ||||||| ||||||||| |||||||||||||| ||||| |     
T  14514968 aactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatcataagaaaaacacat 14514869  T
Q  470 gcaatccatcaatacagaaaga 491  Q
    ||| ||| | || |||||||||    
T  14514868 gcagtcccttaacacagaaaga 14514847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 372 - 439
Target Start/End: Complemental strand, 20975624 - 20975557
Alignment:
Q  372 ctaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatg 439  Q
    |||| ||||| ||||||| ||||||| |||||||||||||||||| |||||||||| |||||||||||    
T  20975624 ctaaatttaaacaattgaatccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 18908808 - 18908885
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    ||||||||||||| |  |||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18908808 gaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 444
Target Start/End: Original strand, 18920764 - 18920841
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    ||||||||||||| |  |||||||||||||| |||| ||||||||||||| |||| | ||| ||||||||||||||||    
T  18920764 gaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18920841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 18913556 - 18913632
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtt 443  Q
    ||||||||||||| |  |||||||||||||| |||| ||||||||||||| |||| | ||| |||||||||||||||    
T  18913556 gaaaactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtt 18913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 25698562 - 25698507
Alignment:
Q  383 caattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    ||||| ||||||||| |||||||||||||||||  |||||||||| ||||||||||    
T  25698562 caatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 370 - 443
Target Start/End: Complemental strand, 554544 - 554471
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtt 443  Q
    ||||||||||||  |||||||||||||| |||| ||||||| ||||  |||||||||| |||| || |||||||    
T  554544 aactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggtt 554471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 528 - 573
Target Start/End: Complemental strand, 14514793 - 14514748
Alignment:
Q  528 gggagcaacaactgtgtatatgtctctgtcctcatatcaagtgaga 573  Q
    |||||||| ||||||||||||||||||||||||| |||||| ||||    
T  14514793 gggagcaagaactgtgtatatgtctctgtcctcaaatcaagcgaga 14514748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 440
Target Start/End: Complemental strand, 25377142 - 25377072
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgg 440  Q
    ||||||||||||  |||||| ||||||| |||| ||||||||| ||||||||   ||| ||||||||||||    
T  25377142 aactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 367 - 453
Target Start/End: Original strand, 29597551 - 29597637
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaat 453  Q
    |||||||||||||||  |||||||||||||||| |||||||||||||||  |||||||||| ||||||||||| ||||  |||||||    
T  29597551 gaaaactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaat 29597637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 367 - 481
Target Start/End: Complemental strand, 29647747 - 29647633
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaaca 466  Q
    |||||||||||||||  |||||||||||||||| ||||| |||||||||  |||||||||| ||||||||||| ||||| || | ||  | ||| |||||    
T  29647747 gaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaaca 29647648  T
Q  467 gaggcaatccatcaa 481  Q
     ||||||||||||||    
T  29647647 aaggcaatccatcaa 29647633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 374 - 490
Target Start/End: Original strand, 18964836 - 18964952
Alignment:
Q  374 aattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaacagaggcaa 473  Q
    ||||||||  |||||||||||||| ||||||||||||||||||||||||||||| ||||  ||||| ||||| |  | ||||| ||  ||||| ||||||    
T  18964836 aattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatgagtaaaacaaaggcaa 18964935  T
Q  474 tccatcaatacagaaag 490  Q
    | |||||||||| ||||    
T  18964936 ttcatcaatacacaaag 18964952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 367 - 445
Target Start/End: Complemental strand, 29642430 - 29642352
Alignment:
Q  367 gaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtttt 445  Q
    |||||||||||||||  |||||||||||||||| ||||| |||||||||  |||||||||| ||||| ||||| |||||    
T  29642430 gaaaactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagtttt 29642352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 24330917 - 24330975
Alignment:
Q  386 ttgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  24330917 ttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 24330975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 29597419 - 29597499
Alignment:
Q  205 ctctattatttttcaaattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaa 285  Q
    |||||||  ||||||||||||| |||||||||| || || || || | |||| ||||||||||| |||||||||| |||||    
T  29597419 ctctatttgttttcaaattataaagaattgctttgtgtcctacatagcttgcgaatatcaatgtttcaccattctcagaaa 29597499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 574
Target Start/End: Original strand, 18964978 - 18965039
Alignment:
Q  513 tcatcacaacatcgggggagcaacaactgtgtatatgtctctgtcctcatatcaagtgagat 574  Q
    |||||||||||| | ||||| |||||||||||| |||||||  ||| || ||||||||||||    
T  18964978 tcatcacaacatggagggagtaacaactgtgtaaatgtctccatccccagatcaagtgagat 18965039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 436
Target Start/End: Complemental strand, 23086833 - 23086784
Alignment:
Q  387 tgagtccaagattcttcaactccaaattccttcatttgccaaataacaaa 436  Q
    ||||||||||| |||| ||||||||| |||||||| ||||| ||||||||    
T  23086833 tgagtccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 205 - 285
Target Start/End: Complemental strand, 29647889 - 29647809
Alignment:
Q  205 ctctattatttttcaaattatagagaattgcttggtctcgtaaattgattgcaaatatcaatgtatcaccattcttagaaa 285  Q
    |||||||  ||||||||||||| |||||||||| || |  || || | |||| ||||||||||| |||||||||| |||||    
T  29647889 ctctatttgttttcaaattataaagaattgctttgtgtgctacatagcttgcgaatatcaatgtttcaccattctcagaaa 29647809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 4570995 - 4570927
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    |||||||||||| ||||||||||||||| |||||||| ||||||| |||||||||||| ||||||||||    
T  4570995 aactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 370 - 439
Target Start/End: Original strand, 50645487 - 50645556
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatg 439  Q
    ||||||||||||  |||||| ||||||| |||| ||||||||| |||||||||||||| |||||||||||    
T  50645487 aactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatg 50645556  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 438
Target Start/End: Complemental strand, 10219053 - 10218985
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    ||||||||||||  |||||||||||||| |||||||  ||||||| |||||||||||| | ||||||||    
T  10219053 aactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaat 10218985  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 438
Target Start/End: Original strand, 39379063 - 39379131
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaat 438  Q
    |||| |||||||  |||||||||||||| |||||||| |||||||||||||| ||||| |||| |||||    
T  39379063 aactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 466
Target Start/End: Complemental strand, 15961282 - 15961200
Alignment:
Q  384 aattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaaca 466  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||| ||||| | ||| ||||  ||||| |||| ||| |||||    
T  15961282 aattgagtccaagattcttcagctccaaatttcttcattttccatataaccatatgtgtttgtttgaagtcatgagaaaaaca 15961200  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 21855401 - 21855459
Alignment:
Q  386 ttgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    |||||||||||| |||||||| |||||||||||||| | ||| |||||||||| |||||    
T  21855401 ttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 21855459  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 370 - 435
Target Start/End: Original strand, 4014967 - 4015032
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaa 435  Q
    |||||| |||||  |||||||||||||| |||||||| ||||||| |||||| ||||| |||||||    
T  4014967 aactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 427
Target Start/End: Original strand, 4016774 - 4016831
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgcca 427  Q
    |||||| ||||| ||| |||||||| || |||||||||||||||| |||||| |||||    
T  4016774 aactaaatttaaacaactgagtccaggaatcttcaactccaaatttcttcatctgcca 4016831  T

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Target: scaffold0867 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 466
Target Start/End: Original strand, 4671 - 4767
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatcataagataaaca 466  Q
    |||||||||| |  || ||||||||||| |||| ||||||||||| |||||||||||| |||| |||||| ||||| |||||||||| ||| |||||    
T  4671 aactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaaca 4767  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 370 - 432
Target Start/End: Complemental strand, 3625802 - 3625740
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataa 432  Q
    ||||||||||||  |||||||||||||| |||||||| ||||||| |||||||||||| ||||    
T  3625802 aactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 25901281 - 25901351
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgg 440  Q
    |||||||||| | ||||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25901281 aactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25901351  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 440
Target Start/End: Original strand, 25915299 - 25915369
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgg 440  Q
    |||||||||| | ||||||| ||||||| |||| ||||| ||| |||||||||| ||| ||||||||||||    
T  25915299 aactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25915369  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 3837960 - 3837904
Alignment:
Q  387 tgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtt 443  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  3837960 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 3837904  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 404 - 444
Target Start/End: Original strand, 42846461 - 42846501
Alignment:
Q  404 aactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  42846461 aactccaaaatccttcatttgccaaataacaaaatgggttt 42846501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 370 - 436
Target Start/End: Complemental strand, 29390354 - 29390288
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaa 436  Q
    |||||| || || ||||| ||| |||||||||||||||||||||||| |||| ||||| ||||||||    
T  29390354 aactaaattgaaacaatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 11339435 - 11339505
Alignment:
Q  384 aattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatc 454  Q
    ||||||||||||||||||| || |||||| ||  |||||||||| |||||||| || ||||  ||||||||    
T  11339435 aattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaattgagtttccttgaaatc 11339505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 384 - 454
Target Start/End: Original strand, 11345117 - 11345187
Alignment:
Q  384 aattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttttgttgaaatc 454  Q
    ||||||||||||||||||| || |||||| || | ||||||||| |||||||| || ||||  ||||||||    
T  11345117 aattgagtccaagattcttgaaatccaaactcttccatttgccatataacaaattgagtttccttgaaatc 11345187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 444
Target Start/End: Complemental strand, 27618559 - 27618485
Alignment:
Q  370 aactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggttt 444  Q
    |||||| ||||| ||| ||||||||||| ||||||||||| | ||| | ||||| ||| ||||||||||| ||||    
T  27618559 aactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagttt 27618485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 436
Target Start/End: Original strand, 11338592 - 11338644
Alignment:
Q  384 aattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaa 436  Q
    ||||||| ||||||||||| || |||||| || ||||||||||| ||||||||    
T  11338592 aattgagaccaagattcttgaaatccaaactctttcatttgccatataacaaa 11338644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 387 - 443
Target Start/End: Complemental strand, 13441 - 13385
Alignment:
Q  387 tgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggtt 443  Q
    ||||||||||| |||| ||||||||| || ||||||| ||| | |||||||||||||    
T  13441 tgagtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 13385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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