View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18704_low_70 (Length: 240)

Name: NF18704_low_70
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18704_low_70
NF18704_low_70
[»] scaffold0879 (2 HSPs)
scaffold0879 (70-193)||(638-761)
scaffold0879 (7-59)||(550-602)
[»] chr4 (8 HSPs)
chr4 (70-193)||(24466373-24466496)
chr4 (66-193)||(23107965-23108092)
chr4 (7-59)||(24466285-24466337)
chr4 (70-137)||(4413515-4413582)
chr4 (7-59)||(4413618-4413670)
chr4 (66-188)||(28319344-28319466)
chr4 (7-55)||(28319260-28319308)
chr4 (7-48)||(23107877-23107918)
[»] chr5 (8 HSPs)
chr5 (66-188)||(16746594-16746716)
chr5 (66-193)||(31895901-31896028)
chr5 (7-59)||(19947872-19947924)
chr5 (66-141)||(16746475-16746550)
chr5 (70-193)||(19947713-19947836)
chr5 (7-56)||(16746391-16746440)
chr5 (7-44)||(31896062-31896099)
chr5 (99-188)||(29126093-29126182)
[»] chr1 (12 HSPs)
chr1 (66-137)||(11619979-11620050)
chr1 (66-193)||(16584918-16585045)
chr1 (66-185)||(42010023-42010142)
chr1 (66-139)||(25785810-25785883)
chr1 (7-59)||(1161403-1161455)
chr1 (66-137)||(8084048-8084119)
chr1 (7-59)||(16584834-16584886)
chr1 (15-55)||(8084155-8084195)
chr1 (7-59)||(11620082-11620134)
chr1 (7-59)||(18461273-18461325)
chr1 (15-59)||(25785915-25785959)
chr1 (66-193)||(1161487-1161613)
[»] chr2 (8 HSPs)
chr2 (66-193)||(31111418-31111545)
chr2 (7-59)||(36009323-36009375)
chr2 (66-193)||(13852323-13852450)
chr2 (6-59)||(13852238-13852291)
chr2 (23-59)||(4638318-4638354)
chr2 (7-59)||(31111577-31111629)
chr2 (97-143)||(36009224-36009270)
chr2 (66-139)||(4638213-4638286)
[»] chr8 (9 HSPs)
chr8 (66-136)||(17722474-17722544)
chr8 (7-59)||(7956310-7956362)
chr8 (7-59)||(44223297-44223349)
chr8 (66-139)||(44223381-44223454)
chr8 (7-59)||(17722390-17722442)
chr8 (7-59)||(35948991-35949043)
chr8 (66-193)||(35948832-35948959)
chr8 (66-139)||(7956394-7956467)
chr8 (66-139)||(3767710-3767783)
[»] chr7 (8 HSPs)
chr7 (6-59)||(7995109-7995162)
chr7 (7-59)||(46993412-46993464)
chr7 (7-48)||(7352340-7352381)
chr7 (66-139)||(7352423-7352496)
chr7 (66-138)||(7995005-7995077)
chr7 (66-132)||(39695148-39695214)
chr7 (17-59)||(39695246-39695288)
chr7 (66-143)||(46993303-46993380)
[»] scaffold0565 (2 HSPs)
scaffold0565 (8-59)||(1815-1866)
scaffold0565 (66-143)||(1898-1975)
[»] chr3 (2 HSPs)
chr3 (7-59)||(46655679-46655731)
chr3 (66-137)||(46655576-46655647)


Alignment Details
Target: scaffold0879 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 638 - 761
Alignment:
Q  70 caaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgattttgt 169  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||  ||| ||| | ||| |||||||| ||| ||    
T  638 caaactagatcggtttcaattggttcggatcggtttcaaaccgaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgt 737  T
Q  170 tgatttagtccgaaccactcacac 193  Q
    || ||||||| |||||||| ||||    
T  738 tggtttagtctgaaccacttacac 761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0879; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 550 - 602
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  550 gataatattagtaaaataaggagtgtggttatcatcggattggttcatcggtt 602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 4e-28; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 70 - 193
Target Start/End: Original strand, 24466373 - 24466496
Alignment:
Q  70 caaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgattttgt 169  Q
    ||||||||||||||||||||| ||||||||||||||||||  ||||||||||||||| |||||||||||  ||| ||| | ||| |||||||| ||| ||    
T  24466373 caaactagatcggtttcaattggttcggatcggtttcaaaccgaaccaaacaagatcagatattttttcagtttggtctggtttggactatcggtttcgt 24466472  T
Q  170 tgatttagtccgaaccactcacac 193  Q
    || ||||||| |||||||| ||||    
T  24466473 tggtttagtctgaaccacttacac 24466496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 23107965 - 23108092
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||   ||||||||||| |||||||||||| |  ||| || || ||| |||| ||| ||    
T  23107965 aaaccaaactagatcggtttcgattggttcggatcggtttcaaaccaaaccaaacaaggtcggatatttttcctgtttggttcggtttggactttcggtt 23108064  T
Q  166 ttgttgatttagtccgaaccactcacac 193  Q
    | |||| ||| |||||||||||| ||||    
T  23108065 tcgttggttttgtccgaaccacttacac 23108092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 24466285 - 24466337
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24466285 gataatattagtaaaataaggagtgtggttatcatcggattggttcatcggtt 24466337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 4413582 - 4413515
Alignment:
Q  70 caaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatatttttt 137  Q
    ||||||||||||||||| ||| |||||||||||||| |||  ||||||||||||||||||||||||||    
T  4413582 caaactagatcggtttcgattggttcggatcggttttaaaccgaaccaaacaagatcggatatttttt 4413515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 4413670 - 4413618
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  4413670 gataatactagtaaaataaggagtgtgattatcatcggattggtttatcggtt 4413618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 28319344 - 28319466
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    |||||||| || |||| |||  ||| ||||||| ||||||||||  |||||||||||  || |||||||||||| ||| || ||||||||||| ||||||    
T  28319344 aaaccaaattaaatcgattttgattggttcggaacggtttcaaaccgaaccaaacaatgtcagatattttttcggtttggttcgatttagactttcgatt 28319443  T
Q  166 ttgttgatttagtccgaaccact 188  Q
    | |||| ||| | ||||| ||||    
T  28319444 tcgttggttttgcccgaatcact 28319466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 55
Target Start/End: Original strand, 28319260 - 28319308
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatc 55  Q
    ||||||| |||||||||||||||||||||||||||| ||||| ||||||    
T  28319260 gataatattagtaaaataaggagtgtggttatcatcagattgattcatc 28319308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 23107877 - 23107918
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattg 48  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  23107877 gataatattagtaaaataaggagtatggttatcatcggattg 23107918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 66 - 188
Target Start/End: Original strand, 16746594 - 16746716
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||  |||||||||||| | ||||||||||||||||| || || |||||||| ||| ||    
T  16746594 aaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaacaaggttggatattttttcgatttggttcggtttagactttcggtt 16746693  T
Q  166 ttgttgatttagtccgaaccact 188  Q
    | |||| ||| ||||||||||||    
T  16746694 tcgttggttttgtccgaaccact 16746716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 31896028 - 31895901
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    ||||||||||||||||||||  ||| |||| |||||||||||||  |||||||||||| ||||||||||||||| ||| || |  ||| |||| ||||||    
T  31896028 aaaccaaactagatcggtttggattggttcagatcggtttcaaaccgaaccaaacaaggtcggatattttttcggtttggttcagtttggactttcgatt 31895929  T
Q  166 ttgttgatttagtccgaaccactcacac 193  Q
    |||||| ||| |||||||||||| ||||    
T  31895928 ttgttggttttgtccgaaccacttacac 31895901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 19947924 - 19947872
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19947924 gataatattagtaaaataaggagtgtggttatcatcggattggttcatcggtt 19947872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 16746475 - 16746550
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgat 141  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||||  |||||||||||| | |||||||||||||||    
T  16746475 aaaccaaactagatcggtttcgattggtttggatcggtttcaaaccgaaccaaacaaggttggatattttttcgat 16746550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 193
Target Start/End: Complemental strand, 19947836 - 19947713
Alignment:
Q  70 caaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgattttgt 169  Q
    |||| |||||| | ||| ||| ||| |||||||||||||| ||||||||||||  ||||||||||||||| ||| || || ||| |||| |||  || ||    
T  19947836 caaagtagatcagattcgattggtttggatcggtttcaaactgaaccaaacaatgtcggatattttttcggtttggttcggtttggactttcggattcgt 19947737  T
Q  170 tgatttagtccgaaccactcacac 193  Q
    |||||| |||||||||||| ||||    
T  19947736 tgattttgtccgaaccacttacac 19947713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 16746391 - 16746440
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcg 56  Q
    ||||||| ||||||||||||||||| ||||||||||||||||||||||||    
T  16746391 gataatattagtaaaataaggagtgaggttatcatcggattggttcatcg 16746440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 31896099 - 31896062
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcgg 44  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  31896099 gataatattagtaaaataaggagtgtggttatcatcgg 31896062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 188
Target Start/End: Complemental strand, 29126182 - 29126093
Alignment:
Q  99 tcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgattttgttgatttagtccgaaccact 188  Q
    ||||||||||| ||| |||||||| |||||||| ||||||| ||| || || |||| | | || |||| |||| ||| ||||||||||||    
T  29126182 tcggtttcaaactgacccaaacaaaatcggatactttttcggtttggttcggtttaaattctccatttcgttggttttgtccgaaccact 29126093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 11620050 - 11619979
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatatttttt 137  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  11620050 aaaccaaactagatcggtttcgattagtttggatcggtttcaaactgaaccaaacaagatcggatatttttt 11619979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 16584918 - 16585045
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    |||||||||||||||||| || ||| ||||||||||||||||||  |||||||||||| | ||||||||||||| ||| || || ||| |||| ||| ||    
T  16584918 aaaccaaactagatcggtatcgattggttcggatcggtttcaaaccgaaccaaacaaggttggatattttttcgttttggttcggtttggactttcggtt 16585017  T
Q  166 ttgttgatttagtccgaaccactcacac 193  Q
    | |||| ||| |||||||||||| ||||    
T  16585018 tcgttggttttgtccgaaccacttacac 16585045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 66 - 185
Target Start/End: Original strand, 42010023 - 42010142
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||  |||||||||||  ||||||||||||||| ||| ||||  ||| |||||||| ||    
T  42010023 aaactaaactagatcggtttcaattggtttggatcggtttcaaaccgaaccaaacaatgtcggatattttttcggtttggtccagtttggactatcggtt 42010122  T
Q  166 ttgttgatttagtccgaacc 185  Q
    | |||| |||| ||||||||    
T  42010123 tcgttggtttaatccgaacc 42010142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 25785883 - 25785810
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcg 139  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||  |||||||||||| |||||||||||||||    
T  25785883 aaaccaaactatatcggtttcgattggttcggatcggtttcaaaccgaaccaaacaaggtcggatattttttcg 25785810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 1161403 - 1161455
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1161403 gataatattagtaaaataaggagtgtggttatcatcggattggttcatcggtt 1161455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 8084119 - 8084048
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatatttttt 137  Q
    ||||||||||||||||||||| ||| |||||||| |||||||||   ||||||||||| |||||||||||||    
T  8084119 aaaccaaactagatcggtttcgattggttcggattggtttcaaaccaaaccaaacaaggtcggatatttttt 8084048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 16584834 - 16584886
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||||||||||||    
T  16584834 gataatattagtaaaataaggagtttggttatcatcagattggttcatcggtt 16584886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 8084195 - 8084155
Alignment:
Q  15 tagtaaaataaggagtgtggttatcatcggattggttcatc 55  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  8084195 tagtaaaataaggagtgtggttatcatcggattgattcatc 8084155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 11620134 - 11620082
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||| ||||||  ||||||||||||||||||||||||    
T  11620134 gataatattagtaaaataagtagtgtgagtatcatcggattggttcatcggtt 11620082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 18461325 - 18461273
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| || |||| ||| |||||||||||||||||||||||||||||||||    
T  18461325 gataatattaataaattaatgagtgtggttatcatcggattggttcatcggtt 18461273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Complemental strand, 25785959 - 25785915
Alignment:
Q  15 tagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||||||| || ||||||||||||||||||||||||||||||    
T  25785959 tagtaaaataaagaatgtggttatcatcggattggttcatcggtt 25785915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 1161487 - 1161613
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    ||||||||||||||||||||| ||| | | |||| |||||||||  |||||||| ||| ||||||| ||||||| ||| || || |||| ||| | ||||    
T  1161487 aaaccaaactagatcggtttcgattggcttggattggtttcaaaccgaaccaaataaggtcggata-tttttcggtttggttcggtttaaacttttgatt 1161585  T
Q  166 ttgttgatttagtccgaaccactcacac 193  Q
    | |||| || |||| |||||||| ||||    
T  1161586 tcgttggttcagtctgaaccacttacac 1161613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 31111545 - 31111418
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    ||||||||||||||||||||||||| |||| |||| ||||||||  |||||||||||| ||||||||||||||| ||| || | |||| || | ||| ||    
T  31111545 aaaccaaactagatcggtttcaattggttcagatcagtttcaaaccgaaccaaacaaggtcggatattttttcggtttggttcaatttggattttcggtt 31111446  T
Q  166 ttgttgatttagtccgaaccactcacac 193  Q
    | |||||||| |||  ||||||| ||||    
T  31111445 tcgttgattttgtctaaaccacttacac 31111418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 36009375 - 36009323
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  36009375 gataatattagtaaaataaggagtgtggttatcatcggattgattcatcggtt 36009323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 66 - 193
Target Start/End: Original strand, 13852323 - 13852450
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    ||||||||||||||||||||  ||| ||| ||||||||||||||  ||| |||||||  || |||||||||| |||||  | | |||| |||| ||||||    
T  13852323 aaaccaaactagatcggttttgattggtttggatcggtttcaaaccgaatcaaacaaagtcagatatttttttgatttgattcaatttggactttcgatt 13852422  T
Q  166 ttgttgatttagtccgaaccactcacac 193  Q
    | |||| ||| |||||||| ||| ||||    
T  13852423 tcgttggttttgtccgaactacttacac 13852450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 13852238 - 13852291
Alignment:
Q  6 agataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    |||||||| || ||||||||||||||||||||||| | ||||||||||||||||    
T  13852238 agataatattaataaaataaggagtgtggttatcaacagattggttcatcggtt 13852291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 4638354 - 4638318
Alignment:
Q  23 taaggagtgtggttatcatcggattggttcatcggtt 59  Q
    |||||||||||||||||||||||||||||||||||||    
T  4638354 taaggagtgtggttatcatcggattggttcatcggtt 4638318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 31111629 - 31111577
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||| ||||||||||||| | |||||||| |||||||    
T  31111629 gataatattagtaaaataagaagtgtggttatcaccagattggtttatcggtt 31111577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 143
Target Start/End: Complemental strand, 36009270 - 36009224
Alignment:
Q  97 gatcggtttcaaattgaaccaaacaagatcggatattttttcgattt 143  Q
    |||||||||||||  |||| |||||||||||||||||||||| ||||    
T  36009270 gatcggtttcaaaccgaactaaacaagatcggatattttttcaattt 36009224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 139
Target Start/End: Complemental strand, 4638286 - 4638213
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcg 139  Q
    ||||||||||| ||| || |  ||| |||||||||| |||||||  ||||| |||||| |||||||||||||||    
T  4638286 aaaccaaactaaatcagtattgattggttcggatcgatttcaaaccgaaccgaacaaggtcggatattttttcg 4638213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 136
Target Start/End: Original strand, 17722474 - 17722544
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttt 136  Q
    ||||||||||||||||||||| |||||||||||| |||||||||  |||||||||||| | ||||||||||    
T  17722474 aaaccaaactagatcggtttcgattagttcggattggtttcaaaccgaaccaaacaaggttggatattttt 17722544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 7956310 - 7956362
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  7956310 gataatattagtaaaataaggagtatggttatcatcggattggttcatcggtt 7956362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 44223297 - 44223349
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  44223297 gataatatttgtaaaataaggagtgtggttatcatcggattggttcatcggtt 44223349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 44223381 - 44223454
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcg 139  Q
    |||||||||||||| |||||| ||| |||| ||||||||| ||| ||||||||||||||||  |||||||||||    
T  44223381 aaaccaaactagattggtttcgattggttcagatcggttttaaactgaaccaaacaagatcatatattttttcg 44223454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Original strand, 17722390 - 17722442
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| ||||||| ||| |||||||||||||||||||||||||||||||||    
T  17722390 gataatattagtaaagtaatgagtgtggttatcatcggattggttcatcggtt 17722442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 35949043 - 35948991
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||||| ||| ||||||||||||||||||||||||||    
T  35949043 gataatattagtaaaataaggaatgttgttatcatcggattggttcatcggtt 35948991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 193
Target Start/End: Complemental strand, 35948959 - 35948832
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattttgtccgatttagactatcgatt 165  Q
    |||||||||||||||| |||  | |  |||||||||||||||||  |||||||||||  ||||||||||||| | ||| || | |||| |||| ||| ||    
T  35948959 aaaccaaactagatcgattttgaatgattcggatcggtttcaaaccgaaccaaacaaagtcggatatttttttgttttggttcaatttggactttcgttt 35948860  T
Q  166 ttgttgatttagtccgaaccactcacac 193  Q
    | |||| ||| ||||||| |||| ||||    
T  35948859 tcgttggttttgtccgaaacacttacac 35948832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 7956394 - 7956467
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcg 139  Q
    ||||||||||||||||||||| ||| ||||| ||||||||||||   ||| || |||| ||| |||||||||||    
T  7956394 aaaccaaactagatcggtttcgattggttcgaatcggtttcaaaccaaacaaagcaaggtcgaatattttttcg 7956467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 3767710 - 3767783
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcg 139  Q
    ||||||||||||||||||||  ||| |||||| |||||||  ||  |||| ||||||| ||||||| |||||||    
T  3767710 aaaccaaactagatcggtttagattggttcggttcggttttgaaccgaactaaacaaggtcggatactttttcg 3767783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 7995162 - 7995109
Alignment:
Q  6 agataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    |||||||| |||||||||||||||||||||||| ||||||||||||||||||||    
T  7995162 agataatattagtaaaataaggagtgtggttattatcggattggttcatcggtt 7995109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 46993464 - 46993412
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||||    
T  46993464 gataatattagtaaaataaggagtgtggttatcatcggattggttaatcggtt 46993412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 7352340 - 7352381
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattg 48  Q
    ||||||| ||||||||||||||||||||||||||||||||||    
T  7352340 gataatattagtaaaataaggagtgtggttatcatcggattg 7352381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 7352423 - 7352496
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcg 139  Q
    ||||||||||||| ||||||| ||| ||||||||||||||||||   ||||||| ||  |||||||||||||||    
T  7352423 aaaccaaactagaccggtttcgattggttcggatcggtttcaaaccaaaccaaataaagtcggatattttttcg 7352496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 138
Target Start/End: Complemental strand, 7995077 - 7995005
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttc 138  Q
    ||||||||||||||||||||||||| |||||||||| |||  ||  |||||||||||| ||  ||||||||||    
T  7995077 aaaccaaactagatcggtttcaattggttcggatcgattttcaaccgaaccaaacaaggtcaaatattttttc 7995005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 132
Target Start/End: Complemental strand, 39695214 - 39695148
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatat 132  Q
    ||||||||||| ||| ||||| ||| |||| |||||||||||||  |||||||||||| ||||||||    
T  39695214 aaaccaaactatatcagtttcgattggttcagatcggtttcaaaccgaaccaaacaaggtcggatat 39695148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 59
Target Start/End: Complemental strand, 39695288 - 39695246
Alignment:
Q  17 gtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||||||||||| |||||||||| ||||||||||||||||    
T  39695288 gtaaaataaggagtgaggttatcatcagattggttcatcggtt 39695246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 46993380 - 46993303
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattt 143  Q
    ||||||||||||||| ||||| |||  ||||||||  |||||||  || ||||||||| ||| ||||||||| |||||    
T  46993380 aaaccaaactagatcagtttcgattgattcggatcaatttcaaaccgacccaaacaaggtcgaatattttttagattt 46993303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 8 - 59
Target Start/End: Original strand, 1815 - 1866
Alignment:
Q  8 ataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  1815 ataatattagtaaaataaggagtgttgttatcatcggattggttcatcggtt 1866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 143
Target Start/End: Original strand, 1898 - 1975
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatattttttcgattt 143  Q
    |||||||| |||||| ||||  ||| |||| ||||| |||||||  |||||||||||| |||||||||||||| ||||    
T  1898 aaaccaaagtagatcagttttgattggttccgatcgatttcaaaccgaaccaaacaaggtcggatattttttcaattt 1975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 7 - 59
Target Start/End: Complemental strand, 46655731 - 46655679
Alignment:
Q  7 gataatactagtaaaataaggagtgtggttatcatcggattggttcatcggtt 59  Q
    ||||||| |||||||||||| |||||||||||||| |||||||||||||||||    
T  46655731 gataatattagtaaaataagaagtgtggttatcattggattggttcatcggtt 46655679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 46655647 - 46655576
Alignment:
Q  66 aaaccaaactagatcggtttcaattagttcggatcggtttcaaattgaaccaaacaagatcggatatttttt 137  Q
    |||||||||||||| |||||  ||| ||||||||||||||||||  |||||||  ||| |||||||||||||    
T  46655647 aaaccaaactagattggttttgattggttcggatcggtttcaaaccgaaccaagtaaggtcggatatttttt 46655576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University