View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_71 (Length: 240)
Name: NF18704_low_71
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_71 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 51819987 - 51820222
Alignment:
| Q |
1 |
cacagatccaaaaccaattatttgaacactatttcagttctacnnnnnnngaaaagagaattgttacttcttttattatgactatcttacattactccct |
100 |
Q |
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| T |
51819987 |
cacagatccaaaaccaattatttgaacactatttcagttctacaaaaaaagaaaagggaattgttacttcttttattatgactatcttacattactccct |
51820086 |
T |
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| Q |
101 |
tttcctggcaaaatttacaatccatagctaatttaaattgtgaaatagtggggatcccctttgtttgtaatcactgatccaaaaacttccactttctgaa |
200 |
Q |
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| T |
51820087 |
tttcctggcaaaatttacaatccatagctaatttaaattgtgaaatagtggggatcccc----tttgtaatcactgatccaaaaacttccactttctgaa |
51820182 |
T |
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| Q |
201 |
attaaacacttcatttatcattgacctcaattttctttcc |
240 |
Q |
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| T |
51820183 |
attaaacacttcatttatcattgacctcaattttctttcc |
51820222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 51819813 - 51819940
Alignment:
| Q |
9 |
caaaaccaattatttgaacactatttcagttctacnnnnnnngaaaagagaattgttacttcttttattatgacta----tcttacattactcccttttc |
104 |
Q |
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|||| ||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||| ||||||| |||||||||| ||||| ||| |
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| T |
51819813 |
caaagccaattatttgaacactattttagttcta-taataaggaaaagagaatttttacttattttataatgactaagtatcttacattattccctcttc |
51819911 |
T |
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| Q |
105 |
ctggcaaaatttacaatccatagctaatt |
133 |
Q |
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| T |
51819912 |
cctgcaaaatttacaatctatagcaaatt |
51819940 |
T |
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