View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_73 (Length: 238)
Name: NF18704_low_73
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_73 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 6 - 221
Target Start/End: Complemental strand, 45604725 - 45604510
Alignment:
| Q |
6 |
tatattggtcaggtggtcacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggcc |
105 |
Q |
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| T |
45604725 |
tatattggtcaggtggtcacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggcc |
45604626 |
T |
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| Q |
106 |
aaagctatggaaatggaatcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaag |
205 |
Q |
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| T |
45604625 |
aaagctatggaaatggaatcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactcttcaccctctcttcaaaaacttgcaacacaag |
45604526 |
T |
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| Q |
206 |
atccacacaattataa |
221 |
Q |
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||||||| |||||||| |
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| T |
45604525 |
atccacataattataa |
45604510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 8 - 173
Target Start/End: Original strand, 20069834 - 20069999
Alignment:
| Q |
8 |
tattggtcaggtggtcacagatagcacaacatttgccaggaaggacagacaatgagataaaaaactattggcattcatatttgaaaaagagagtggccaa |
107 |
Q |
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|||||||||||||||| ||||| |||||||| ||||| |||||||| ||||| ||||| ||||| ||||||||||||||| ||||||||| || | ||| |
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| T |
20069834 |
tattggtcaggtggtctcagattgcacaacaattgccgggaaggaccgacaacgagattaaaaattattggcattcatatctgaaaaagaaagaagtcaa |
20069933 |
T |
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| Q |
108 |
agctatggaaatggaatcacacaaacaatttcaatatgctagctcaagctcagatacaatgaactc |
173 |
Q |
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| T |
20069934 |
aagtaaggatattgaatctcatactcaaattcaatatgctagttcaagctcagatacaatgaactc |
20069999 |
T |
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