View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18704_low_76 (Length: 237)
Name: NF18704_low_76
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_76 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 46921024 - 46920804
Alignment:
| Q |
1 |
ttgaactgcattagaaatataagcattccaagtagccaagtttctatgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
46921024 |
ttgaactgcattagaaatataagcattccaagtagccaagtttctatgaggcatttcatcaaacatgttacaagcatcaccgtgaaacccagttttacaa |
46920925 |
T |
|
| Q |
101 |
tacatatcaaaacaactacacccaacaaacacatcatatatcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
46920924 |
tacatatcaaaacaactacacccaacaaacacatcatatatcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcataa |
46920825 |
T |
|
| Q |
201 |
gagcagaagctttgaaaacac |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
46920824 |
gagcagaagctttgaaaacac |
46920804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 46891702 - 46891841
Alignment:
| Q |
1 |
ttgaactgcattagaaatataagcattccaagtagccaagtttctatgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaa |
100 |
Q |
| |
|
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | | || ||||||||| ||| |
|
|
| T |
46891702 |
ttgaactgcaatggaaatataagcattccaagtggccaagtttctatgaggcatttcatcaaacatgttacaagcatcaac-caaagcccagttttgcaa |
46891800 |
T |
|
| Q |
101 |
tacatatcaaaacaactacacccaacaaacacatcatatat |
141 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||| |
|
|
| T |
46891801 |
cacatatcaaaagcaccacacccaacaaatacatcatatat |
46891841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38311181 - 38310961
Alignment:
| Q |
1 |
ttgaactgcattagaaatataagcattccaagtagccaagtttctatgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38311181 |
ttgaactgcattagaaatataagcattccaagtagccaagtttctttgaggcatttcatcaaacatgttacaagcatcaccgcgaaacccagttttacaa |
38311082 |
T |
|
| Q |
101 |
tacatatcaaaacaactacacccaacaaacacatcatatatcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcaaaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
38311081 |
tacatatcaaaacaactacacccaacaaacacatcatatatcatcccaccctttaaagcaagaccgtgaatctgtttaccagtcatgggtatctgcacaa |
38310982 |
T |
|
| Q |
201 |
gagcagaagctttgaaaacac |
221 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
38310981 |
aagcagaagctttgaaaacac |
38310961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University