View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18704_low_77 (Length: 237)
Name: NF18704_low_77
Description: NF18704
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18704_low_77 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13511548 - 13511410
Alignment:
| Q |
1 |
aggtattggcttggtcaacaaacatttgtcctttagattggacagattatcgtggccgaccagggttattgattctctcattctctcttatcttttgata |
100 |
Q |
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| T |
13511548 |
aggtattgacttggtcaacaaacatttgtcctttagattgaacatattatcgtggccgaccagggttattgattctctccttctctcttatcttttgata |
13511449 |
T |
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| Q |
101 |
caact-aaaataataaataattgttgactgtgattattg |
138 |
Q |
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| T |
13511448 |
caactaaaaataataaataattgttgactgtgattattg |
13511410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 13601079 - 13600941
Alignment:
| Q |
1 |
aggtattggcttggtcaacaaacatttgtcctttagattggacagattatcgtggccgaccagggttattgattctctcattctctcttatcttttgata |
100 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
13601079 |
aggtattgacttggtcaacaaacatttgtcctttagattgaacatattatcgtggccgaccagggttattgattctctccttctctcttatcttttgata |
13600980 |
T |
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| Q |
101 |
caact-aaaataataaataattgttgactgtgattattg |
138 |
Q |
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| T |
13600979 |
caactaaaaataataaataattgttgactgtgattattg |
13600941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 16798926 - 16798835
Alignment:
| Q |
46 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
136 |
Q |
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| T |
16798926 |
attatcgcggcccaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgactctgattat |
16798835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 16840277 - 16840186
Alignment:
| Q |
46 |
attatcgtggccgaccagggttattgattctctcattctctcttatcttttgatacaact-aaaataataaataattgttgactgtgattat |
136 |
Q |
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||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
16840277 |
attatcgcggccgaccagggttattgattctctccttctctcttatcttttgatacaactaaaaataataaataattgttgattctgattat |
16840186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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